Wall clock time and date at job start Wed Apr 1 2020 00:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46509 * 109.47035 * 2 1 4 4 C 1.46506 * 119.99839 * 270.00275 * 3 2 1 5 5 C 1.50696 * 109.46794 * 269.99775 * 4 3 2 6 6 H 1.08002 * 120.00574 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99828 * 180.02562 * 5 4 3 8 8 N 1.31522 * 119.99846 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99954 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47127 * 90.00310 * 9 7 5 11 11 H 1.48503 * 109.46914 * 209.99953 * 9 7 5 12 12 H 1.48498 * 109.47165 * 330.00169 * 9 7 5 13 13 C 1.34770 * 119.99747 * 90.00113 * 3 2 1 14 14 O 1.21285 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00252 * 359.97438 * 13 3 2 16 16 O 1.45201 * 109.47499 * 180.02562 * 15 13 3 17 17 C 1.34221 * 117.00608 * 180.02562 * 16 15 13 18 18 O 1.20831 * 119.99887 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00221 * 180.02562 * 17 16 15 20 20 C 1.53009 * 109.47179 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47160 * 179.97438 * 20 19 17 22 22 C 1.52997 * 110.21605 * 300.70032 * 21 20 19 23 23 C 1.54482 * 110.24343 * 178.76814 * 21 20 19 24 24 C 1.54633 * 101.76156 * 215.49613 * 23 21 20 25 25 C 1.51280 * 104.19839 * 24.80215 * 24 23 21 26 26 O 1.21280 * 124.94580 * 163.77874 * 25 24 23 27 27 N 1.34423 * 110.11287 * 343.74712 * 25 24 23 28 28 H 1.09000 * 109.47309 * 60.00457 * 1 2 3 29 29 H 1.09001 * 109.46941 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.46969 * 299.99771 * 1 2 3 31 31 H 1.09003 * 109.47505 * 240.00201 * 2 1 3 32 32 H 1.08993 * 109.47209 * 119.99941 * 2 1 3 33 33 H 1.08997 * 109.47219 * 29.99860 * 4 3 2 34 34 H 1.08994 * 109.46958 * 150.00082 * 4 3 2 35 35 H 0.97001 * 119.99840 * 180.02562 * 8 7 5 36 36 H 1.09006 * 109.47075 * 60.00698 * 15 13 3 37 37 H 1.09002 * 109.47751 * 300.00311 * 15 13 3 38 38 H 1.08995 * 109.47592 * 59.99883 * 19 17 16 39 39 H 1.09001 * 109.47501 * 299.99703 * 19 17 16 40 40 H 1.08995 * 109.46990 * 59.99470 * 20 19 17 41 41 H 1.09000 * 109.46715 * 299.99415 * 20 19 17 42 42 H 1.09002 * 109.47153 * 298.06917 * 22 21 20 43 43 H 1.09001 * 109.46832 * 178.07108 * 22 21 20 44 44 H 1.09004 * 109.47261 * 58.07089 * 22 21 20 45 45 H 1.08999 * 110.97153 * 333.61604 * 23 21 20 46 46 H 1.08993 * 110.96474 * 97.34510 * 23 21 20 47 47 H 1.09004 * 110.48006 * 143.48107 * 24 23 21 48 48 H 1.08995 * 110.48488 * 265.98865 * 24 23 21 49 49 H 0.97000 * 124.35011 * 179.59421 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8352 -1.7038 6 1 4.3426 1.2304 -1.0962 7 6 4.1493 2.3906 -2.8775 8 7 5.3913 2.1835 -3.2574 9 14 3.0129 3.4360 -3.9288 10 1 3.1155 4.8562 -3.5070 11 1 3.4066 3.3138 -5.3554 12 1 1.6134 2.9693 -3.7596 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9913 1.3064 2.4722 16 8 2.3053 2.1961 3.5759 17 6 2.1343 1.7124 4.8163 18 8 1.7350 0.5831 4.9746 19 6 2.4393 2.5783 6.0114 20 6 2.1624 1.7923 7.2946 21 6 2.4726 2.6712 8.5080 22 6 3.9373 3.1125 8.4805 23 6 2.1696 1.9048 9.8146 24 6 1.6395 3.0349 10.7272 25 6 1.1116 4.0739 9.7626 26 8 0.3663 4.9832 10.0604 27 7 1.5893 3.8431 8.5275 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.5816 1.6878 -2.0284 34 1 2.0955 3.1411 -1.1384 35 1 5.7175 2.5746 -4.0830 36 1 2.6213 0.4187 2.5302 37 1 0.9432 1.0125 2.5299 38 1 1.8092 3.4673 5.9863 39 1 3.4878 2.8753 5.9868 40 1 2.7928 0.9035 7.3194 41 1 1.1140 1.4950 7.3194 42 1 4.5822 2.2355 8.5370 43 1 4.1362 3.7650 9.3306 44 1 4.1372 3.6513 7.5543 45 1 1.4061 1.1439 9.6525 46 1 3.0766 1.4629 10.2268 47 1 0.8374 2.6649 11.3659 48 1 2.4473 3.4479 11.3314 49 1 1.3775 4.3819 7.7492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751511184.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:35 Heat of formation + Delta-G solvation = -161.450922 kcal Electronic energy + Delta-G solvation = -29547.637065 eV Core-core repulsion = 25281.840674 eV Total energy + Delta-G solvation = -4265.796391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.23302 -40.57113 -39.13961 -37.72676 -36.54379 -35.46639 -33.66008 -32.80053 -31.83606 -30.54474 -30.16555 -29.21867 -27.26780 -26.41137 -24.12380 -23.09910 -22.37402 -21.30487 -21.14401 -20.18979 -18.72418 -18.13232 -17.18684 -17.13094 -16.87967 -16.70887 -16.51373 -16.06243 -15.55388 -15.24742 -15.05669 -14.51975 -14.42479 -14.14498 -13.98163 -13.61694 -13.56817 -13.31792 -13.25114 -12.99956 -12.79448 -12.67628 -12.59987 -12.41768 -12.24356 -12.10471 -11.88134 -11.59164 -11.51213 -11.41247 -11.18346 -11.07356 -10.95478 -10.70466 -10.64813 -10.55196 -10.24079 -10.21319 -9.60460 -9.58483 -9.17065 -8.63634 -7.87557 -6.13452 -4.12956 2.01509 2.22335 2.32328 2.89970 3.10762 3.25841 3.31655 3.33793 3.66171 3.75606 3.93581 4.15086 4.33948 4.35248 4.41492 4.55136 4.68462 4.71152 4.73901 4.91048 4.99772 5.05377 5.09900 5.13692 5.19713 5.21433 5.25644 5.29425 5.32727 5.43107 5.44747 5.48922 5.59915 5.60880 5.76201 5.88346 6.05666 6.26227 6.30790 6.40697 6.61234 6.62829 6.85342 7.19366 7.53672 7.56981 7.86986 8.05786 8.39928 8.76239 8.89642 9.45978 10.99720 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019561 B = 0.001963 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.057149 B =14260.265446 C =14657.042959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.587 5.587 4 C 0.218 3.782 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.518 6.518 15 C 0.051 3.949 16 O -0.329 6.329 17 C 0.461 3.539 18 O -0.512 6.512 19 C -0.118 4.118 20 C -0.110 4.110 21 C 0.156 3.844 22 C -0.164 4.164 23 C -0.123 4.123 24 C -0.157 4.157 25 C 0.520 3.480 26 O -0.537 6.537 27 N -0.723 5.723 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.034 0.966 34 H 0.038 0.962 35 H 0.265 0.735 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.125 -4.997 24.820 26.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.321 5.321 4 C 0.098 3.902 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.394 6.394 15 C -0.026 4.026 16 O -0.244 6.244 17 C 0.304 3.696 18 O -0.400 6.400 19 C -0.156 4.156 20 C -0.148 4.148 21 C 0.070 3.930 22 C -0.223 4.223 23 C -0.161 4.161 24 C -0.197 4.197 25 C 0.306 3.694 26 O -0.413 6.413 27 N -0.380 5.380 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.132 0.868 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.113 0.887 47 H 0.120 0.880 48 H 0.123 0.877 49 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -7.261 -4.261 24.920 26.304 hybrid contribution -0.493 0.497 -1.217 1.404 sum -7.754 -3.765 23.702 25.221 Atomic orbital electron populations 1.22245 0.96473 1.01905 1.02322 1.21545 0.93658 0.83551 1.03505 1.47881 1.64162 1.13552 1.06483 1.19706 0.97558 0.93436 0.79513 1.21303 0.95241 1.33144 1.07286 0.90698 1.24860 0.95038 0.95776 0.97334 1.69897 1.15104 1.44799 1.23574 0.86846 0.81396 0.81620 0.79793 1.19850 1.21013 1.19062 1.19725 0.79453 0.87133 0.84333 1.90720 1.44314 1.17570 1.86749 1.22930 1.02762 0.92661 0.84283 1.86561 1.78431 1.44970 1.14460 1.23689 0.74176 0.86977 0.84716 1.90668 1.42530 1.20086 1.86753 1.21477 1.05702 0.98897 0.89497 1.21785 1.04307 0.98196 0.90513 1.21078 0.90635 0.85401 0.95935 1.22308 0.94052 1.02611 1.03281 1.22710 1.03086 0.97174 0.93097 1.22362 1.03199 0.95776 0.98345 1.20885 0.79244 0.85175 0.84066 1.90776 1.36204 1.33929 1.80406 1.46481 1.48830 1.31571 1.11078 0.91948 0.91654 0.93066 0.89143 0.91392 0.94862 0.94414 0.92495 0.88433 0.88675 0.87829 0.86784 0.88923 0.89880 0.90606 0.91777 0.91273 0.89446 0.88730 0.87988 0.87743 0.75093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 10.24 37.16 0.38 -1.68 16 2 C 0.10 1.50 5.93 -4.04 -0.02 1.47 16 3 N -0.59 -11.66 2.46 -175.06 -0.43 -12.09 16 4 C 0.22 5.18 4.23 -5.19 -0.02 5.16 16 5 C -0.53 -14.95 9.94 -34.44 -0.34 -15.29 16 6 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 9 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 13 C 0.51 10.23 7.75 -10.99 -0.09 10.15 16 14 O -0.52 -12.74 16.08 -14.11 -0.23 -12.97 16 15 C 0.05 0.77 4.50 36.00 0.16 0.93 16 16 O -0.33 -4.99 9.75 -45.88 -0.45 -5.44 16 17 C 0.46 5.49 7.96 36.00 0.29 5.78 16 18 O -0.51 -6.88 15.73 -18.75 -0.30 -7.18 16 19 C -0.12 -0.87 5.32 -27.88 -0.15 -1.02 16 20 C -0.11 -0.64 3.71 -26.73 -0.10 -0.74 16 21 C 0.16 0.73 0.87 -130.90 -0.11 0.62 16 22 C -0.16 -0.66 8.47 37.16 0.31 -0.35 16 23 C -0.12 -0.43 6.21 -25.09 -0.16 -0.59 16 24 C -0.16 -0.78 6.86 -26.74 -0.18 -0.96 16 25 C 0.52 4.59 8.43 -10.86 -0.09 4.50 16 26 O -0.54 -7.30 18.03 5.56 0.10 -7.20 16 27 N -0.72 -4.79 5.39 -46.61 -0.25 -5.04 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.59 7.22 -51.93 -0.37 0.21 16 31 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 32 H 0.07 0.85 6.44 -51.93 -0.33 0.51 16 33 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 34 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 35 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.10 1.34 7.39 -51.93 -0.38 0.96 16 37 H 0.10 1.23 7.18 -51.93 -0.37 0.86 16 38 H 0.10 0.65 6.90 -51.93 -0.36 0.29 16 39 H 0.11 0.70 6.43 -51.93 -0.33 0.37 16 40 H 0.09 0.52 8.10 -51.93 -0.42 0.10 16 41 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 42 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.07 0.30 6.39 -51.93 -0.33 -0.03 16 45 H 0.09 0.29 7.91 -51.93 -0.41 -0.12 16 46 H 0.09 0.18 7.89 -51.93 -0.41 -0.23 16 47 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.41 2.60 7.70 -40.82 -0.31 2.29 16 LS Contribution 400.42 15.07 6.03 6.03 Total: -1.00 -38.10 400.42 -7.37 -45.47 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -7.74 Total: -1.67 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -0.22 Total: 9.97 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.09 Total: -43.57 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.87 Total: -32.78 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -38.10 -7.37 -45.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751511184.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.982 kcal (2) G-P(sol) polarization free energy of solvation -38.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds