Wall clock time and date at job start Wed Apr 1 2020 00:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46509 * 109.47035 * 2 1 4 4 C 1.46506 * 119.99839 * 270.00275 * 3 2 1 5 5 C 1.50696 * 109.46794 * 269.99775 * 4 3 2 6 6 H 1.08002 * 120.00574 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99828 * 180.02562 * 5 4 3 8 8 N 1.31522 * 119.99846 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99954 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47127 * 90.00310 * 9 7 5 11 11 H 1.48503 * 109.46914 * 209.99953 * 9 7 5 12 12 H 1.48498 * 109.47165 * 330.00169 * 9 7 5 13 13 C 1.34770 * 119.99747 * 90.00113 * 3 2 1 14 14 O 1.21285 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00252 * 359.97438 * 13 3 2 16 16 O 1.45201 * 109.47499 * 180.02562 * 15 13 3 17 17 C 1.34221 * 117.00608 * 180.02562 * 16 15 13 18 18 O 1.20831 * 119.99887 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00221 * 180.02562 * 17 16 15 20 20 C 1.53009 * 109.47179 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47160 * 179.97438 * 20 19 17 22 22 C 1.52997 * 110.21605 * 300.70032 * 21 20 19 23 23 C 1.54482 * 110.24343 * 178.76814 * 21 20 19 24 24 C 1.54633 * 101.76156 * 215.49613 * 23 21 20 25 25 C 1.51280 * 104.19839 * 24.80215 * 24 23 21 26 26 O 1.21280 * 124.94580 * 163.77874 * 25 24 23 27 27 N 1.34423 * 110.11287 * 343.74712 * 25 24 23 28 28 H 1.09000 * 109.47309 * 60.00457 * 1 2 3 29 29 H 1.09001 * 109.46941 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.46969 * 299.99771 * 1 2 3 31 31 H 1.09003 * 109.47505 * 240.00201 * 2 1 3 32 32 H 1.08993 * 109.47209 * 119.99941 * 2 1 3 33 33 H 1.08997 * 109.47219 * 29.99860 * 4 3 2 34 34 H 1.08994 * 109.46958 * 150.00082 * 4 3 2 35 35 H 0.97001 * 119.99840 * 180.02562 * 8 7 5 36 36 H 1.09006 * 109.47075 * 60.00698 * 15 13 3 37 37 H 1.09002 * 109.47751 * 300.00311 * 15 13 3 38 38 H 1.08995 * 109.47592 * 59.99883 * 19 17 16 39 39 H 1.09001 * 109.47501 * 299.99703 * 19 17 16 40 40 H 1.08995 * 109.46990 * 59.99470 * 20 19 17 41 41 H 1.09000 * 109.46715 * 299.99415 * 20 19 17 42 42 H 1.09002 * 109.47153 * 298.06917 * 22 21 20 43 43 H 1.09001 * 109.46832 * 178.07108 * 22 21 20 44 44 H 1.09004 * 109.47261 * 58.07089 * 22 21 20 45 45 H 1.08999 * 110.97153 * 333.61604 * 23 21 20 46 46 H 1.08993 * 110.96474 * 97.34510 * 23 21 20 47 47 H 1.09004 * 110.48006 * 143.48107 * 24 23 21 48 48 H 1.08995 * 110.48488 * 265.98865 * 24 23 21 49 49 H 0.97000 * 124.35011 * 179.59421 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8352 -1.7038 6 1 4.3426 1.2304 -1.0962 7 6 4.1493 2.3906 -2.8775 8 7 5.3913 2.1835 -3.2574 9 14 3.0129 3.4360 -3.9288 10 1 3.1155 4.8562 -3.5070 11 1 3.4066 3.3138 -5.3554 12 1 1.6134 2.9693 -3.7596 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9913 1.3064 2.4722 16 8 2.3053 2.1961 3.5759 17 6 2.1343 1.7124 4.8163 18 8 1.7350 0.5831 4.9746 19 6 2.4393 2.5783 6.0114 20 6 2.1624 1.7923 7.2946 21 6 2.4726 2.6712 8.5080 22 6 3.9373 3.1125 8.4805 23 6 2.1696 1.9048 9.8146 24 6 1.6395 3.0349 10.7272 25 6 1.1116 4.0739 9.7626 26 8 0.3663 4.9832 10.0604 27 7 1.5893 3.8431 8.5275 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.5816 1.6878 -2.0284 34 1 2.0955 3.1411 -1.1384 35 1 5.7175 2.5746 -4.0830 36 1 2.6213 0.4187 2.5302 37 1 0.9432 1.0125 2.5299 38 1 1.8092 3.4673 5.9863 39 1 3.4878 2.8753 5.9868 40 1 2.7928 0.9035 7.3194 41 1 1.1140 1.4950 7.3194 42 1 4.5822 2.2355 8.5370 43 1 4.1362 3.7650 9.3306 44 1 4.1372 3.6513 7.5543 45 1 1.4061 1.1439 9.6525 46 1 3.0766 1.4629 10.2268 47 1 0.8374 2.6649 11.3659 48 1 2.4473 3.4479 11.3314 49 1 1.3775 4.3819 7.7492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751511184.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:34 Heat of formation + Delta-G solvation = -188.134678 kcal Electronic energy + Delta-G solvation = -29548.794159 eV Core-core repulsion = 25281.840674 eV Total energy + Delta-G solvation = -4266.953485 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.95451 -41.47473 -40.60529 -38.45289 -37.63268 -37.02411 -34.89268 -34.26993 -32.28821 -32.08268 -31.02221 -30.26007 -28.74781 -27.04067 -24.86381 -24.43925 -23.94582 -22.04040 -21.76221 -20.77243 -20.21779 -19.14614 -19.06917 -18.09471 -17.97602 -17.90602 -17.36160 -17.00899 -16.76068 -16.48539 -15.97966 -15.84408 -15.24723 -15.11026 -14.86194 -14.77657 -14.60655 -14.47967 -14.17568 -13.90264 -13.80601 -13.64973 -13.48145 -13.39102 -13.21745 -13.17818 -13.08957 -12.60019 -12.56347 -12.43838 -12.15095 -12.06213 -12.02808 -11.82674 -11.78444 -11.75239 -11.63528 -11.58095 -10.93765 -10.84356 -10.80096 -10.16085 -9.54533 -8.34962 -6.40430 1.08732 1.25030 1.33678 1.36867 1.44952 1.56551 1.58592 2.30005 2.33414 2.39559 2.99128 3.32245 3.37512 3.44909 3.63912 3.76472 3.88853 3.94060 3.98447 4.10594 4.12737 4.19129 4.29877 4.34996 4.45716 4.56719 4.56970 4.74943 4.76674 4.84823 4.91706 4.93005 4.94194 4.97240 4.97574 5.11647 5.15816 5.18565 5.29806 5.34624 5.43618 5.44429 5.55256 5.88793 6.05211 6.20203 6.48715 6.60994 6.62861 7.14352 7.24563 7.27589 8.81678 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019561 B = 0.001963 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.057149 B =14260.265446 C =14657.042959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.593 5.593 4 C 0.226 3.774 5 C -0.537 4.537 6 H 0.030 0.970 7 C 0.011 3.989 8 N -0.943 5.943 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.275 1.275 12 H -0.237 1.237 13 C 0.500 3.500 14 O -0.575 6.575 15 C 0.062 3.938 16 O -0.353 6.353 17 C 0.461 3.539 18 O -0.526 6.526 19 C -0.115 4.115 20 C -0.102 4.102 21 C 0.159 3.841 22 C -0.165 4.165 23 C -0.116 4.116 24 C -0.151 4.151 25 C 0.509 3.491 26 O -0.596 6.596 27 N -0.719 5.719 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.020 0.980 35 H 0.269 0.731 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.129 0.871 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.091 0.909 46 H 0.120 0.880 47 H 0.108 0.892 48 H 0.120 0.880 49 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.465 -6.416 25.938 28.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.029 4.029 3 N -0.325 5.325 4 C 0.104 3.896 5 C -0.576 4.576 6 H 0.049 0.951 7 C -0.187 4.187 8 N -0.583 5.583 9 Si 0.770 3.230 10 H -0.203 1.203 11 H -0.200 1.200 12 H -0.160 1.160 13 C 0.287 3.713 14 O -0.455 6.455 15 C -0.015 4.015 16 O -0.269 6.269 17 C 0.306 3.694 18 O -0.416 6.416 19 C -0.153 4.153 20 C -0.140 4.140 21 C 0.073 3.927 22 C -0.223 4.223 23 C -0.153 4.153 24 C -0.190 4.190 25 C 0.297 3.703 26 O -0.477 6.477 27 N -0.373 5.373 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.132 0.868 37 H 0.141 0.859 38 H 0.132 0.868 39 H 0.147 0.853 40 H 0.119 0.881 41 H 0.093 0.907 42 H 0.111 0.889 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.110 0.890 46 H 0.138 0.862 47 H 0.126 0.874 48 H 0.138 0.862 49 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -8.609 -5.771 26.043 28.030 hybrid contribution 0.015 0.857 -1.524 1.748 sum -8.594 -4.914 24.519 26.442 Atomic orbital electron populations 1.22180 0.93746 1.03925 1.02216 1.21892 0.95828 0.80742 1.04448 1.47981 1.63845 1.15345 1.05321 1.19375 0.95122 0.93130 0.81979 1.21531 0.96977 1.32256 1.06816 0.95120 1.25850 0.96741 0.97184 0.98961 1.70047 1.17365 1.46408 1.24492 0.85729 0.80527 0.78995 0.77794 1.20255 1.20035 1.15969 1.20596 0.78051 0.86693 0.85949 1.90680 1.46879 1.20162 1.87760 1.22781 1.04686 0.91996 0.82043 1.86579 1.79071 1.45695 1.15541 1.24485 0.73314 0.87305 0.84340 1.90654 1.43320 1.20913 1.86675 1.21671 1.06828 0.98697 0.88068 1.21750 1.03983 0.98392 0.89894 1.21202 0.90718 0.84589 0.96216 1.22328 0.93488 1.03338 1.03113 1.22780 1.04345 0.96517 0.91695 1.22397 1.03744 0.94984 0.97908 1.21596 0.78406 0.85082 0.85241 1.90736 1.38953 1.36521 1.81479 1.46623 1.48320 1.31793 1.10579 0.92944 0.88515 0.92304 0.90019 0.88762 0.92706 0.96168 0.92239 0.86825 0.85877 0.86840 0.85266 0.88092 0.90711 0.88926 0.91701 0.91748 0.89001 0.86173 0.87407 0.86208 0.75301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 10.24 71.98 0.74 -2.66 16 2 C 0.09 2.57 5.93 86.38 0.51 3.08 16 3 N -0.59 -23.30 2.46 -826.15 -2.03 -25.33 16 4 C 0.23 10.74 4.23 85.63 0.36 11.11 16 5 C -0.54 -31.11 9.94 25.60 0.25 -30.86 16 6 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 7 C 0.01 0.63 5.47 84.65 0.46 1.10 16 8 N -0.94 -59.01 13.96 21.45 0.30 -58.71 16 9 Si 0.95 43.81 27.47 68.60 1.88 45.70 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 13 C 0.50 20.13 7.75 87.66 0.68 20.80 16 14 O -0.58 -29.12 16.08 15.75 0.25 -28.86 16 15 C 0.06 1.78 4.50 71.23 0.32 2.10 16 16 O -0.35 -10.38 9.75 -44.98 -0.44 -10.82 16 17 C 0.46 10.23 7.96 71.23 0.57 10.80 16 18 O -0.53 -13.04 15.73 21.95 0.35 -12.70 16 19 C -0.12 -1.50 5.32 29.85 0.16 -1.34 16 20 C -0.10 -0.95 3.71 30.60 0.11 -0.84 16 21 C 0.16 1.12 0.87 4.06 0.00 1.13 16 22 C -0.16 -0.90 8.47 71.98 0.61 -0.29 16 23 C -0.12 -0.46 6.21 31.65 0.20 -0.27 16 24 C -0.15 -1.20 6.86 30.59 0.21 -0.99 16 25 C 0.51 8.77 8.43 87.90 0.74 9.51 16 26 O -0.60 -16.76 18.03 -3.03 -0.05 -16.81 16 27 N -0.72 -8.82 5.39 -419.97 -2.26 -11.08 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.15 7.22 -2.39 -0.02 1.13 16 31 H 0.08 2.41 8.07 -2.39 -0.02 2.39 16 32 H 0.09 2.10 6.44 -2.39 -0.02 2.09 16 33 H 0.06 2.37 7.13 -2.39 -0.02 2.35 16 34 H 0.02 1.04 6.85 -2.39 -0.02 1.02 16 35 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.11 2.91 7.39 -2.38 -0.02 2.89 16 37 H 0.12 2.85 7.18 -2.39 -0.02 2.83 16 38 H 0.11 1.28 6.90 -2.39 -0.02 1.26 16 39 H 0.13 1.33 6.43 -2.39 -0.02 1.31 16 40 H 0.10 0.83 8.10 -2.39 -0.02 0.81 16 41 H 0.07 0.86 8.10 -2.39 -0.02 0.84 16 42 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.06 0.43 6.39 -2.38 -0.02 0.41 16 45 H 0.09 0.34 7.91 -2.39 -0.02 0.32 16 46 H 0.12 -0.06 7.89 -2.39 -0.02 -0.08 16 47 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 48 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.41 5.00 7.70 -92.71 -0.71 4.29 16 Total: -1.00 -87.99 400.42 4.12 -83.87 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.20 Total: 12.37 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: 5.93 Total: 22.38 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -3.99 Total: -95.12 kcal Atomic # 8 Polarization: -69.30 SS G_CDS: 0.11 Total: -69.19 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.70 kcal Total: -87.99 4.12 -83.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751511184.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.269 kcal (2) G-P(sol) polarization free energy of solvation -87.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds