Wall clock time and date at job start Wed Apr 1 2020 00:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.47025 * 2 1 4 4 C 1.46494 * 119.99980 * 269.99632 * 3 2 1 5 5 C 1.50699 * 109.47458 * 270.00410 * 4 3 2 6 6 H 1.08007 * 120.00020 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00430 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00012 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00356 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47122 * 89.99933 * 9 7 5 11 11 H 1.48497 * 109.47425 * 210.00319 * 9 7 5 12 12 H 1.48505 * 109.47110 * 330.00011 * 9 7 5 13 13 C 1.34776 * 119.99669 * 90.00463 * 3 2 1 14 14 O 1.21290 * 119.99834 * 180.02562 * 13 3 2 15 15 C 1.50698 * 120.00451 * 359.97438 * 13 3 2 16 16 O 1.45204 * 109.47351 * 180.02562 * 15 13 3 17 17 C 1.34226 * 117.00212 * 180.02562 * 16 15 13 18 18 O 1.20826 * 119.99688 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00258 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.47144 * 179.97438 * 19 17 16 21 21 C 1.53006 * 109.46811 * 179.97438 * 20 19 17 22 22 C 1.52999 * 110.21385 * 63.07436 * 21 20 19 23 23 C 1.54478 * 110.24236 * 185.00007 * 21 20 19 24 24 C 1.54624 * 101.76564 * 93.58651 * 23 21 20 25 25 C 1.51277 * 104.19514 * 24.79725 * 24 23 21 26 26 O 1.21282 * 124.94034 * 163.78675 * 25 24 23 27 27 N 1.34419 * 110.11922 * 343.74447 * 25 24 23 28 28 H 1.08999 * 109.47013 * 300.00353 * 1 2 3 29 29 H 1.09005 * 109.46799 * 59.99541 * 1 2 3 30 30 H 1.08997 * 109.47220 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47013 * 239.99647 * 2 1 3 32 32 H 1.09005 * 109.46370 * 119.99816 * 2 1 3 33 33 H 1.09001 * 109.47433 * 30.00334 * 4 3 2 34 34 H 1.09005 * 109.47004 * 150.00538 * 4 3 2 35 35 H 0.96997 * 120.00132 * 179.97438 * 8 7 5 36 36 H 1.08992 * 109.47063 * 60.00337 * 15 13 3 37 37 H 1.08997 * 109.47018 * 300.00052 * 15 13 3 38 38 H 1.09009 * 109.47208 * 59.99762 * 19 17 16 39 39 H 1.09001 * 109.47093 * 300.00068 * 19 17 16 40 40 H 1.08992 * 109.47188 * 60.00163 * 20 19 17 41 41 H 1.08997 * 109.46828 * 299.99882 * 20 19 17 42 42 H 1.08994 * 109.47570 * 60.70161 * 22 21 20 43 43 H 1.09003 * 109.46662 * 180.70346 * 22 21 20 44 44 H 1.09004 * 109.46971 * 300.69508 * 22 21 20 45 45 H 1.09008 * 110.96878 * 211.70575 * 23 21 20 46 46 H 1.09004 * 110.97028 * 335.46508 * 23 21 20 47 47 H 1.09003 * 110.48789 * 143.47321 * 24 23 21 48 48 H 1.09005 * 110.48540 * 265.98614 * 24 23 21 49 49 H 0.96990 * 124.35323 * 179.61614 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3430 1.2308 -1.0957 7 6 4.1495 2.3903 -2.8774 8 7 3.3499 3.1273 -3.6171 9 14 5.9139 2.0974 -3.4163 10 1 5.9778 0.8767 -4.2595 11 1 6.3930 3.2651 -4.1986 12 1 6.7738 1.9174 -2.2189 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1602 1.1673 15 6 1.9915 1.3062 2.4723 16 8 2.3056 2.1960 3.5760 17 6 2.1347 1.7123 4.8164 18 8 1.7353 0.5829 4.9746 19 6 2.4408 2.5777 6.0115 20 6 2.1625 1.7922 7.2946 21 6 2.4740 2.6707 8.5080 22 6 1.5472 3.8879 8.5313 23 6 2.3194 1.8561 9.8114 24 6 3.7653 1.3619 10.0477 25 6 4.6264 2.3771 9.3292 26 8 5.8194 2.5185 9.4963 27 7 3.8774 3.0991 8.4781 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8901 33 1 1.5818 1.6877 -2.0284 34 1 2.0957 3.1410 -1.1383 35 1 3.6762 3.5184 -4.4425 36 1 2.6213 0.4186 2.5302 37 1 0.9434 1.0125 2.5299 38 1 1.8114 3.4673 5.9867 39 1 3.4895 2.8738 5.9865 40 1 2.7916 0.9025 7.3197 41 1 1.1137 1.4965 7.3193 42 1 0.5118 3.5549 8.6014 43 1 1.7877 4.5111 9.3926 44 1 1.6823 4.4649 7.6164 45 1 1.9855 2.4920 10.6315 46 1 1.6386 1.0169 9.6685 47 1 3.9958 1.3519 11.1131 48 1 3.9040 0.3693 9.6190 49 1 4.2203 3.8113 7.9161 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751511185.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:37 Heat of formation + Delta-G solvation = -191.892624 kcal Electronic energy + Delta-G solvation = -29638.953381 eV Core-core repulsion = 25371.836940 eV Total energy + Delta-G solvation = -4267.116442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.95673 -41.46123 -40.55318 -38.43825 -37.61390 -36.98476 -34.95652 -34.11299 -32.26314 -31.77989 -31.14122 -30.37442 -28.45527 -26.59521 -25.10190 -24.65040 -24.07715 -22.04615 -21.75759 -20.79419 -20.26224 -19.04863 -18.66286 -18.06143 -17.95551 -17.88353 -17.43631 -16.91652 -16.71844 -16.47600 -16.11210 -15.84621 -15.25725 -14.94260 -14.87558 -14.68579 -14.62850 -14.40724 -14.14847 -13.83600 -13.70304 -13.59742 -13.41689 -13.29421 -13.19209 -13.07651 -13.03850 -12.69668 -12.52362 -12.46515 -12.24693 -12.22492 -12.06303 -11.84560 -11.79599 -11.73201 -11.63103 -11.50388 -10.93794 -10.74686 -10.65918 -10.16087 -9.56217 -8.25129 -6.39500 1.09065 1.28359 1.35577 1.38468 1.48519 1.58106 1.60525 2.31021 2.40118 2.44663 3.04946 3.33282 3.41291 3.50535 3.56955 3.84665 3.92300 3.95164 3.97864 4.04838 4.14058 4.20889 4.35278 4.37023 4.48251 4.52917 4.57903 4.76928 4.87652 4.93034 4.93718 4.96210 4.98669 5.01805 5.11349 5.16667 5.18240 5.20958 5.31502 5.35456 5.41696 5.52518 5.78092 5.90397 6.02357 6.06197 6.53182 6.65506 6.69863 7.19752 7.25298 7.34974 8.82246 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.002126 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.913352 B =13164.757110 C =14183.872025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.926 5.926 9 Si 0.967 3.033 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.275 1.275 13 C 0.498 3.502 14 O -0.579 6.579 15 C 0.063 3.937 16 O -0.354 6.354 17 C 0.460 3.540 18 O -0.526 6.526 19 C -0.113 4.113 20 C -0.107 4.107 21 C 0.158 3.842 22 C -0.159 4.159 23 C -0.113 4.113 24 C -0.155 4.155 25 C 0.508 3.492 26 O -0.596 6.596 27 N -0.718 5.718 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.030 0.970 34 H 0.000 1.000 35 H 0.268 0.732 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.133 0.867 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.102 0.898 46 H 0.114 0.886 47 H 0.110 0.890 48 H 0.111 0.889 49 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.082 -6.373 27.405 29.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.791 3.209 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.200 1.200 13 C 0.285 3.715 14 O -0.459 6.459 15 C -0.014 4.014 16 O -0.270 6.270 17 C 0.305 3.695 18 O -0.416 6.416 19 C -0.150 4.150 20 C -0.145 4.145 21 C 0.072 3.928 22 C -0.217 4.217 23 C -0.151 4.151 24 C -0.195 4.195 25 C 0.296 3.704 26 O -0.477 6.477 27 N -0.372 5.372 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.048 0.952 34 H 0.018 0.982 35 H 0.077 0.923 36 H 0.131 0.869 37 H 0.141 0.859 38 H 0.151 0.849 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.121 0.879 46 H 0.133 0.867 47 H 0.128 0.872 48 H 0.130 0.870 49 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -9.467 -6.051 27.388 29.603 hybrid contribution 1.298 0.455 -1.414 1.973 sum -8.169 -5.596 25.974 27.797 Atomic orbital electron populations 1.22173 0.94174 1.03812 1.01894 1.21869 0.95673 0.80958 1.04333 1.48215 1.63571 1.15264 1.05723 1.18785 0.95527 0.91684 0.79813 1.21690 0.97849 1.32192 1.06613 0.92904 1.25834 1.02341 0.94428 0.96430 1.70040 1.37751 1.33979 1.14819 0.85427 0.79016 0.78258 0.78178 1.18718 1.20599 1.19972 1.20611 0.78302 0.86671 0.85934 1.90680 1.47175 1.20223 1.87791 1.22784 1.04660 0.91943 0.82027 1.86586 1.79063 1.45743 1.15565 1.24524 0.73329 0.87320 0.84360 1.90643 1.43456 1.20782 1.86687 1.21619 1.05872 0.99466 0.88076 1.21872 1.04548 0.97712 0.90400 1.21214 0.80361 0.95696 0.95526 1.22201 1.00017 0.96113 1.03328 1.22770 0.95468 1.01108 0.95722 1.22420 0.95337 0.98836 1.02900 1.21592 0.86640 0.82486 0.79695 1.90739 1.16962 1.71775 1.68264 1.46600 1.10472 1.37507 1.42600 0.92279 0.93708 0.88369 0.90100 0.88469 0.95193 0.98208 0.92324 0.86866 0.85880 0.84938 0.87556 0.91392 0.87896 0.88773 0.91291 0.91488 0.87936 0.86746 0.87159 0.87037 0.75115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 10.24 71.98 0.74 -3.09 16 2 C 0.09 2.76 5.93 86.38 0.51 3.27 16 3 N -0.60 -24.94 2.46 -826.14 -2.03 -26.97 16 4 C 0.26 14.05 5.16 85.63 0.44 14.49 16 5 C -0.54 -31.34 9.39 25.60 0.24 -31.10 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.51 5.46 84.65 0.46 0.98 16 8 N -0.93 -55.77 13.29 21.45 0.28 -55.48 16 9 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 10 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 13 C 0.50 21.01 7.75 87.66 0.68 21.69 16 14 O -0.58 -30.77 16.08 15.74 0.25 -30.52 16 15 C 0.06 1.88 4.50 71.24 0.32 2.20 16 16 O -0.35 -10.82 9.75 -45.02 -0.44 -11.26 16 17 C 0.46 10.68 7.96 71.23 0.57 11.24 16 18 O -0.53 -13.42 15.73 21.96 0.35 -13.08 16 19 C -0.11 -1.58 5.38 29.85 0.16 -1.42 16 20 C -0.11 -1.05 3.67 30.60 0.11 -0.93 16 21 C 0.16 1.09 0.87 4.06 0.00 1.09 16 22 C -0.16 -0.63 8.54 71.98 0.61 -0.02 16 23 C -0.11 -0.44 6.20 31.65 0.20 -0.24 16 24 C -0.16 -1.45 6.86 30.58 0.21 -1.24 16 25 C 0.51 9.31 8.43 87.90 0.74 10.06 16 26 O -0.60 -17.60 18.03 -3.04 -0.05 -17.65 16 27 N -0.72 -9.01 4.87 -419.98 -2.05 -11.05 16 28 H 0.06 1.29 7.22 -2.39 -0.02 1.27 16 29 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.08 2.50 8.07 -2.39 -0.02 2.48 16 32 H 0.10 2.23 6.44 -2.38 -0.02 2.22 16 33 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 34 H 0.00 -0.01 7.42 -2.38 -0.02 -0.03 16 35 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.11 2.99 7.39 -2.39 -0.02 2.97 16 37 H 0.12 2.99 7.18 -2.39 -0.02 2.97 16 38 H 0.13 1.30 6.55 -2.38 -0.02 1.28 16 39 H 0.11 1.52 7.39 -2.39 -0.02 1.50 16 40 H 0.07 0.87 8.10 -2.39 -0.02 0.85 16 41 H 0.10 0.80 8.10 -2.39 -0.02 0.78 16 42 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 43 H 0.07 0.28 8.14 -2.39 -0.02 0.27 16 44 H 0.07 0.30 6.55 -2.39 -0.02 0.29 16 45 H 0.10 0.14 7.91 -2.38 -0.02 0.13 16 46 H 0.11 0.07 7.89 -2.38 -0.02 0.05 16 47 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 49 H 0.41 5.03 8.65 -92.72 -0.80 4.23 16 Total: -1.00 -86.48 405.31 4.50 -81.98 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.16 Total: 10.02 kcal Atomic # 6 Polarization: 20.97 SS G_CDS: 6.00 Total: 26.97 kcal Atomic # 7 Polarization: -89.72 SS G_CDS: -3.79 Total: -93.51 kcal Atomic # 8 Polarization: -72.61 SS G_CDS: 0.10 Total: -72.51 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -86.48 4.50 -81.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751511185.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.912 kcal (2) G-P(sol) polarization free energy of solvation -86.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds