Wall clock time and date at job start Wed Apr 1 2020 00:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46496 * 109.47894 * 2 1 4 4 C 1.46498 * 119.99836 * 270.00688 * 3 2 1 5 5 C 1.50699 * 109.46848 * 269.99120 * 4 3 2 6 6 H 1.08004 * 120.00118 * 0.02562 * 5 4 3 7 7 C 1.37884 * 120.00221 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99807 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00102 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47246 * 60.00211 * 9 7 5 11 11 H 1.48496 * 109.46975 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47136 * 300.00114 * 9 7 5 13 13 C 1.34780 * 119.99982 * 89.99595 * 3 2 1 14 14 O 1.21285 * 119.99701 * 180.02562 * 13 3 2 15 15 C 1.50693 * 120.00096 * 0.02562 * 13 3 2 16 16 O 1.45198 * 109.47397 * 179.97438 * 15 13 3 17 17 C 1.34223 * 117.00375 * 180.02562 * 16 15 13 18 18 O 1.20829 * 119.99890 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00168 * 179.72480 * 17 16 15 20 20 H 1.08998 * 109.58495 * 1.66696 * 19 17 16 21 21 C 1.53191 * 109.58664 * 121.95472 * 19 17 16 22 22 C 1.53044 * 109.31092 * 174.42263 * 21 19 17 23 23 C 1.53041 * 109.53704 * 298.63215 * 22 21 19 24 24 C 1.53184 * 109.31166 * 61.36828 * 23 22 21 25 25 N 1.46932 * 109.58547 * 241.38469 * 19 17 16 26 26 C 1.34770 * 120.62949 * 6.60589 * 25 19 17 27 27 C 1.50700 * 119.99743 * 186.03599 * 26 25 19 28 28 O 1.21280 * 120.00616 * 6.03497 * 26 25 19 29 29 H 1.09005 * 109.46880 * 299.99821 * 1 2 3 30 30 H 1.09002 * 109.47225 * 59.99635 * 1 2 3 31 31 H 1.08992 * 109.47555 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47223 * 239.99781 * 2 1 3 33 33 H 1.09002 * 109.47225 * 120.00365 * 2 1 3 34 34 H 1.08999 * 109.47517 * 29.99541 * 4 3 2 35 35 H 1.09003 * 109.47107 * 149.99388 * 4 3 2 36 36 H 0.96996 * 120.00322 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.47093 * 59.99707 * 15 13 3 38 38 H 1.09002 * 109.47507 * 300.00175 * 15 13 3 39 39 H 1.09002 * 109.49708 * 294.37434 * 21 19 17 40 40 H 1.08998 * 109.49987 * 54.43556 * 21 19 17 41 41 H 1.08998 * 109.45696 * 58.65817 * 22 21 19 42 42 H 1.09004 * 109.45783 * 178.61029 * 22 21 19 43 43 H 1.09000 * 109.49476 * 181.32194 * 23 22 21 44 44 H 1.09003 * 109.49864 * 301.38158 * 23 22 21 45 45 H 1.08998 * 109.58846 * 65.14920 * 24 23 22 46 46 H 1.08999 * 109.58724 * 185.43766 * 24 23 22 47 47 H 1.08998 * 109.47123 * 60.00238 * 27 26 25 48 48 H 1.09008 * 109.47036 * 179.97438 * 27 26 25 49 49 H 1.09000 * 109.47579 * 299.99779 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6858 1.8348 -1.7038 6 1 4.3427 1.2300 -1.0962 7 6 4.1495 2.3903 -2.8775 8 7 3.3498 3.1272 -3.6171 9 14 5.9135 2.0961 -3.4171 10 1 6.1402 0.6394 -3.5955 11 1 6.1610 2.7962 -4.7031 12 1 6.8414 2.6183 -2.3820 13 6 2.2431 2.0165 1.1672 14 8 2.6471 3.1600 1.1672 15 6 1.9923 1.3060 2.4723 16 8 2.3073 2.1953 3.5759 17 6 2.1372 1.7114 4.8163 18 8 1.7378 0.5820 4.9746 19 6 2.4497 2.5746 6.0114 20 1 2.7704 3.5608 5.6759 21 6 1.2001 2.7112 6.8870 22 6 1.5592 3.4706 8.1663 23 6 2.6139 2.6850 8.9490 24 6 3.8794 2.5481 8.0967 25 7 3.5194 1.9515 6.8028 26 6 4.1555 0.8521 6.3523 27 6 5.1538 0.1453 7.2325 28 8 3.9245 0.4314 5.2385 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0956 3.1409 -1.1384 36 1 3.6760 3.5182 -4.4426 37 1 2.6227 0.4186 2.5299 38 1 0.9444 1.0115 2.5302 39 1 0.4320 3.2596 6.3418 40 1 0.8261 1.7202 7.1444 41 1 1.9558 4.4521 7.9067 42 1 0.6663 3.5907 8.7800 43 1 2.8519 3.2148 9.8713 44 1 2.2267 1.6945 9.1879 45 1 4.3182 3.5324 7.9334 46 1 4.5977 1.9083 8.6093 47 1 4.6602 -0.1911 8.1442 48 1 5.5612 -0.7152 6.7017 49 1 5.9618 0.8306 7.4885 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756223158.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:50 Heat of formation + Delta-G solvation = -148.061200 kcal Electronic energy + Delta-G solvation = -31046.330662 eV Core-core repulsion = 26781.114894 eV Total energy + Delta-G solvation = -4265.215769 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.29156 -39.59688 -38.61603 -37.72136 -36.03009 -35.17727 -33.45271 -32.78599 -32.24255 -30.09652 -29.78393 -29.03443 -26.68566 -25.80178 -24.34483 -23.00056 -22.54969 -21.57133 -21.15280 -19.28267 -18.48395 -17.97308 -17.09581 -16.80448 -16.37115 -16.16827 -15.88605 -15.86780 -15.49975 -15.10788 -14.73770 -14.50406 -14.29572 -14.14733 -13.90614 -13.66990 -13.43257 -13.34104 -13.00482 -12.74668 -12.63839 -12.45170 -12.33981 -11.98490 -11.93865 -11.84451 -11.60091 -11.52616 -11.33507 -11.17515 -11.16064 -10.88988 -10.75908 -10.51086 -10.34190 -10.17553 -10.08843 -9.83606 -9.61219 -9.05539 -8.86762 -8.39248 -7.66227 -6.00466 -4.04882 2.06474 2.36298 2.64559 2.91268 3.35691 3.37736 3.39631 3.45534 3.91759 4.21299 4.27817 4.40766 4.48264 4.50655 4.55177 4.78873 4.85648 4.91236 4.99054 5.02458 5.06226 5.08446 5.28014 5.31946 5.34077 5.36402 5.36757 5.39318 5.53412 5.57395 5.58459 5.60188 5.68307 5.82467 5.86249 6.01483 6.09250 6.26695 6.52259 6.67062 6.97992 7.08649 7.46476 7.56109 7.83237 7.95872 8.05610 8.27074 8.39759 8.92615 9.08669 9.59836 11.07692 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.002733 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.146839 B =10241.404751 C =10835.049599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.508 3.492 14 O -0.522 6.522 15 C 0.059 3.941 16 O -0.330 6.330 17 C 0.479 3.521 18 O -0.500 6.500 19 C 0.156 3.844 20 H 0.105 0.895 21 C -0.124 4.124 22 C -0.118 4.118 23 C -0.138 4.138 24 C 0.110 3.890 25 N -0.609 5.609 26 C 0.506 3.494 27 C -0.167 4.167 28 O -0.511 6.511 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.035 0.965 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.094 0.906 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.217 -3.388 28.130 28.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 N -0.327 5.327 4 C 0.130 3.870 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.293 3.707 14 O -0.398 6.398 15 C -0.019 4.019 16 O -0.244 6.244 17 C 0.321 3.679 18 O -0.387 6.387 19 C 0.051 3.949 20 H 0.123 0.877 21 C -0.163 4.163 22 C -0.155 4.155 23 C -0.177 4.177 24 C -0.012 4.012 25 N -0.347 5.347 26 C 0.295 3.705 27 C -0.226 4.226 28 O -0.386 6.386 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.111 0.889 47 H 0.107 0.893 48 H 0.113 0.887 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.235 -3.252 27.318 27.700 hybrid contribution 0.939 -0.356 -0.377 1.073 sum -2.296 -3.609 26.941 27.278 Atomic orbital electron populations 1.22225 0.96609 1.01616 1.02327 1.21498 0.93692 0.84018 1.03036 1.48188 1.63978 1.13390 1.07127 1.19305 0.96383 0.93686 0.77657 1.21422 0.96929 1.31962 1.06311 0.92445 1.24926 0.97883 0.94892 0.96346 1.69919 1.35740 1.33386 1.14410 0.86547 0.84800 0.78261 0.77761 1.20239 1.21181 1.20155 1.19780 0.79467 0.87090 0.84379 1.90694 1.44595 1.17624 1.86847 1.22833 1.02193 0.92827 0.84021 1.86464 1.78833 1.44933 1.14216 1.22636 0.74643 0.86320 0.84321 1.90619 1.43299 1.18581 1.86243 1.20662 0.89780 0.96463 0.87995 0.87674 1.21897 0.95376 1.02789 0.96205 1.21510 0.99399 0.98946 0.95652 1.21967 0.95575 1.01614 0.98512 1.21834 0.97454 0.99450 0.82437 1.48097 1.36271 1.29131 1.21234 1.20990 0.81845 0.79629 0.88020 1.21891 0.98306 1.01875 1.00524 1.90792 1.63146 1.64192 1.20446 0.93166 0.91837 0.91954 0.89504 0.91691 0.94679 0.93752 0.92675 0.88588 0.89273 0.89692 0.90070 0.91048 0.90730 0.90137 0.91111 0.90600 0.88936 0.89291 0.88734 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 10.24 37.15 0.38 -2.09 16 2 C 0.10 1.78 5.93 -4.05 -0.02 1.75 16 3 N -0.59 -13.42 2.46 -175.07 -0.43 -13.84 16 4 C 0.25 6.72 5.16 -5.20 -0.03 6.69 16 5 C -0.53 -15.49 9.39 -34.44 -0.32 -15.81 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 8 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 9 Si 0.90 22.49 29.54 -169.99 -5.02 17.47 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.51 11.80 7.75 -10.99 -0.09 11.71 16 14 O -0.52 -14.36 16.08 -14.11 -0.23 -14.59 16 15 C 0.06 1.13 4.50 36.00 0.16 1.29 16 16 O -0.33 -6.44 9.75 -46.78 -0.46 -6.90 16 17 C 0.48 8.02 4.52 36.01 0.16 8.18 16 18 O -0.50 -9.25 14.33 -26.93 -0.39 -9.64 16 19 C 0.16 1.84 3.34 -68.75 -0.23 1.61 16 20 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 21 C -0.12 -1.07 5.32 -26.61 -0.14 -1.22 16 22 C -0.12 -0.64 5.88 -26.69 -0.16 -0.80 16 23 C -0.14 -0.61 6.08 -26.61 -0.16 -0.77 16 24 C 0.11 0.59 6.34 -3.69 -0.02 0.57 16 25 N -0.61 -6.21 2.98 -166.51 -0.50 -6.71 16 26 C 0.51 6.35 7.50 -10.99 -0.08 6.27 16 27 C -0.17 -1.22 8.68 36.01 0.31 -0.91 16 28 O -0.51 -9.21 12.84 -21.15 -0.27 -9.48 16 29 H 0.05 0.71 7.22 -51.93 -0.38 0.33 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 1.53 8.07 -51.93 -0.42 1.12 16 33 H 0.06 1.01 6.44 -51.93 -0.33 0.68 16 34 H 0.04 0.94 8.07 -51.93 -0.42 0.53 16 35 H 0.04 1.34 7.42 -51.93 -0.39 0.96 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.10 1.84 7.39 -51.93 -0.38 1.45 16 38 H 0.09 1.49 7.18 -51.93 -0.37 1.12 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.80 7.94 -51.93 -0.41 0.39 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.09 0.30 5.94 -51.93 -0.31 -0.01 16 47 H 0.09 0.45 7.93 -51.93 -0.41 0.04 16 48 H 0.09 0.76 8.12 -51.92 -0.42 0.34 16 49 H 0.09 0.44 7.70 -51.93 -0.40 0.04 16 LS Contribution 397.50 15.07 5.99 5.99 Total: -1.00 -39.66 397.50 -8.89 -48.55 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -7.99 Total: -2.66 kcal Atomic # 6 Polarization: 18.52 SS G_CDS: -0.33 Total: 18.19 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.19 Total: -46.94 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -1.34 Total: -40.60 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -39.66 -8.89 -48.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756223158.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.508 kcal (2) G-P(sol) polarization free energy of solvation -39.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds