Wall clock time and date at job start Wed Apr 1 2020 00:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46496 * 109.47894 * 2 1 4 4 C 1.46498 * 119.99836 * 270.00688 * 3 2 1 5 5 C 1.50699 * 109.46848 * 269.99120 * 4 3 2 6 6 H 1.08004 * 120.00118 * 0.02562 * 5 4 3 7 7 C 1.37884 * 120.00221 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99807 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00102 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47246 * 60.00211 * 9 7 5 11 11 H 1.48496 * 109.46975 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47136 * 300.00114 * 9 7 5 13 13 C 1.34780 * 119.99982 * 89.99595 * 3 2 1 14 14 O 1.21285 * 119.99701 * 180.02562 * 13 3 2 15 15 C 1.50693 * 120.00096 * 0.02562 * 13 3 2 16 16 O 1.45198 * 109.47397 * 179.97438 * 15 13 3 17 17 C 1.34223 * 117.00375 * 180.02562 * 16 15 13 18 18 O 1.20829 * 119.99890 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00168 * 179.72480 * 17 16 15 20 20 H 1.08998 * 109.58495 * 1.66696 * 19 17 16 21 21 C 1.53191 * 109.58664 * 121.95472 * 19 17 16 22 22 C 1.53044 * 109.31092 * 174.42263 * 21 19 17 23 23 C 1.53041 * 109.53704 * 298.63215 * 22 21 19 24 24 C 1.53184 * 109.31166 * 61.36828 * 23 22 21 25 25 N 1.46932 * 109.58547 * 241.38469 * 19 17 16 26 26 C 1.34770 * 120.62949 * 6.60589 * 25 19 17 27 27 C 1.50700 * 119.99743 * 186.03599 * 26 25 19 28 28 O 1.21280 * 120.00616 * 6.03497 * 26 25 19 29 29 H 1.09005 * 109.46880 * 299.99821 * 1 2 3 30 30 H 1.09002 * 109.47225 * 59.99635 * 1 2 3 31 31 H 1.08992 * 109.47555 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47223 * 239.99781 * 2 1 3 33 33 H 1.09002 * 109.47225 * 120.00365 * 2 1 3 34 34 H 1.08999 * 109.47517 * 29.99541 * 4 3 2 35 35 H 1.09003 * 109.47107 * 149.99388 * 4 3 2 36 36 H 0.96996 * 120.00322 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.47093 * 59.99707 * 15 13 3 38 38 H 1.09002 * 109.47507 * 300.00175 * 15 13 3 39 39 H 1.09002 * 109.49708 * 294.37434 * 21 19 17 40 40 H 1.08998 * 109.49987 * 54.43556 * 21 19 17 41 41 H 1.08998 * 109.45696 * 58.65817 * 22 21 19 42 42 H 1.09004 * 109.45783 * 178.61029 * 22 21 19 43 43 H 1.09000 * 109.49476 * 181.32194 * 23 22 21 44 44 H 1.09003 * 109.49864 * 301.38158 * 23 22 21 45 45 H 1.08998 * 109.58846 * 65.14920 * 24 23 22 46 46 H 1.08999 * 109.58724 * 185.43766 * 24 23 22 47 47 H 1.08998 * 109.47123 * 60.00238 * 27 26 25 48 48 H 1.09008 * 109.47036 * 179.97438 * 27 26 25 49 49 H 1.09000 * 109.47579 * 299.99779 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6858 1.8348 -1.7038 6 1 4.3427 1.2300 -1.0962 7 6 4.1495 2.3903 -2.8775 8 7 3.3498 3.1272 -3.6171 9 14 5.9135 2.0961 -3.4171 10 1 6.1402 0.6394 -3.5955 11 1 6.1610 2.7962 -4.7031 12 1 6.8414 2.6183 -2.3820 13 6 2.2431 2.0165 1.1672 14 8 2.6471 3.1600 1.1672 15 6 1.9923 1.3060 2.4723 16 8 2.3073 2.1953 3.5759 17 6 2.1372 1.7114 4.8163 18 8 1.7378 0.5820 4.9746 19 6 2.4497 2.5746 6.0114 20 1 2.7704 3.5608 5.6759 21 6 1.2001 2.7112 6.8870 22 6 1.5592 3.4706 8.1663 23 6 2.6139 2.6850 8.9490 24 6 3.8794 2.5481 8.0967 25 7 3.5194 1.9515 6.8028 26 6 4.1555 0.8521 6.3523 27 6 5.1538 0.1453 7.2325 28 8 3.9245 0.4314 5.2385 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0956 3.1409 -1.1384 36 1 3.6760 3.5182 -4.4426 37 1 2.6227 0.4186 2.5299 38 1 0.9444 1.0115 2.5302 39 1 0.4320 3.2596 6.3418 40 1 0.8261 1.7202 7.1444 41 1 1.9558 4.4521 7.9067 42 1 0.6663 3.5907 8.7800 43 1 2.8519 3.2148 9.8713 44 1 2.2267 1.6945 9.1879 45 1 4.3182 3.5324 7.9334 46 1 4.5977 1.9083 8.6093 47 1 4.6602 -0.1911 8.1442 48 1 5.5612 -0.7152 6.7017 49 1 5.9618 0.8306 7.4885 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756223158.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:49 Heat of formation + Delta-G solvation = -173.594717 kcal Electronic energy + Delta-G solvation = -31047.437879 eV Core-core repulsion = 26781.114894 eV Total energy + Delta-G solvation = -4266.322985 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.35383 -41.06395 -40.14882 -38.52448 -37.47895 -36.99310 -34.97414 -34.17663 -32.97115 -31.78814 -30.68710 -30.39814 -28.52648 -26.70323 -25.22131 -24.74769 -24.15086 -22.52560 -21.98486 -20.41897 -19.94580 -19.18487 -18.68118 -18.23670 -18.05195 -17.56058 -17.40030 -16.98820 -16.73820 -16.43412 -16.12533 -15.79838 -15.19085 -15.06661 -14.96056 -14.77432 -14.70748 -14.48397 -14.26147 -14.02050 -13.77634 -13.72548 -13.57930 -13.32367 -13.22575 -13.13318 -12.99173 -12.70205 -12.58695 -12.54714 -12.24621 -12.16779 -12.07658 -11.82715 -11.79480 -11.75160 -11.65338 -11.37593 -10.81125 -10.78066 -10.67115 -9.84442 -9.59993 -8.25994 -6.40776 0.96806 1.30173 1.34358 1.38868 1.45899 1.51166 1.55006 1.97732 2.27786 2.40542 3.03499 3.34947 3.44857 3.65348 3.76711 3.79606 3.85762 3.92210 4.00040 4.06783 4.10083 4.16841 4.32163 4.37550 4.47032 4.52619 4.58199 4.65101 4.74384 4.83200 4.84200 4.88682 4.92553 4.97983 5.04510 5.12523 5.14343 5.18442 5.29728 5.31136 5.41010 5.44234 5.50412 5.76053 6.01186 6.22003 6.51645 6.66956 6.70579 7.02428 7.15383 7.32248 8.81474 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.002733 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.146839 B =10241.404751 C =10835.049599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.094 3.906 3 N -0.594 5.594 4 C 0.264 3.736 5 C -0.550 4.550 6 H 0.050 0.950 7 C 0.011 3.989 8 N -0.925 5.925 9 Si 0.968 3.032 10 H -0.261 1.261 11 H -0.273 1.273 12 H -0.280 1.280 13 C 0.502 3.498 14 O -0.576 6.576 15 C 0.075 3.925 16 O -0.354 6.354 17 C 0.473 3.527 18 O -0.521 6.521 19 C 0.152 3.848 20 H 0.109 0.891 21 C -0.118 4.118 22 C -0.114 4.114 23 C -0.134 4.134 24 C 0.101 3.899 25 N -0.605 5.605 26 C 0.489 3.511 27 C -0.157 4.157 28 O -0.578 6.578 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.033 0.967 35 H 0.001 0.999 36 H 0.269 0.731 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.110 0.890 44 H 0.065 0.935 45 H 0.089 0.911 46 H 0.121 0.879 47 H 0.118 0.882 48 H 0.082 0.918 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.455 -4.141 31.019 31.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.143 3.857 5 C -0.589 4.589 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.565 5.565 9 Si 0.792 3.208 10 H -0.185 1.185 11 H -0.198 1.198 12 H -0.205 1.205 13 C 0.289 3.711 14 O -0.456 6.456 15 C -0.002 4.002 16 O -0.270 6.270 17 C 0.317 3.683 18 O -0.410 6.410 19 C 0.047 3.953 20 H 0.127 0.873 21 C -0.156 4.156 22 C -0.152 4.152 23 C -0.171 4.171 24 C -0.019 4.019 25 N -0.342 5.342 26 C 0.280 3.720 27 C -0.216 4.216 28 O -0.459 6.459 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.051 0.949 35 H 0.019 0.981 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.134 0.866 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.129 0.871 44 H 0.084 0.916 45 H 0.108 0.892 46 H 0.139 0.861 47 H 0.136 0.864 48 H 0.101 0.899 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.500 -4.028 30.270 30.639 hybrid contribution 0.664 -0.104 -1.224 1.397 sum -1.836 -4.132 29.046 29.395 Atomic orbital electron populations 1.22157 0.93936 1.03863 1.01927 1.21842 0.95867 0.81064 1.04036 1.48205 1.63573 1.15178 1.05700 1.18814 0.95645 0.91698 0.79549 1.21663 0.97856 1.32505 1.06831 0.93220 1.25838 1.02509 0.94291 0.96218 1.70029 1.37807 1.33809 1.14810 0.85466 0.78829 0.79072 0.77440 1.18505 1.19821 1.20519 1.20475 0.78295 0.86606 0.85744 1.90650 1.47135 1.20078 1.87768 1.22580 1.03623 0.91814 0.82228 1.86476 1.79511 1.45634 1.15409 1.23626 0.73634 0.86792 0.84215 1.90578 1.44451 1.19672 1.86273 1.20875 0.92064 0.95453 0.86890 0.87323 1.21922 0.93759 1.02642 0.97308 1.21553 1.00664 0.98910 0.94033 1.21975 0.94440 1.01592 0.99139 1.22285 0.98799 1.00487 0.80337 1.48362 1.34991 1.28438 1.22394 1.22028 0.82235 0.79921 0.87795 1.21921 0.97864 1.01546 1.00220 1.90749 1.65599 1.66100 1.23438 0.92655 0.93159 0.88309 0.89742 0.89439 0.94920 0.98070 0.92199 0.88502 0.86606 0.89599 0.91478 0.90145 0.89173 0.87125 0.91597 0.89240 0.86119 0.86376 0.89904 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 10.24 71.98 0.74 -3.77 16 2 C 0.09 3.27 5.93 86.38 0.51 3.78 16 3 N -0.59 -27.88 2.46 -826.18 -2.03 -29.91 16 4 C 0.26 14.98 5.16 85.63 0.44 15.42 16 5 C -0.55 -33.36 9.39 25.60 0.24 -33.12 16 6 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.65 5.46 84.66 0.46 1.11 16 8 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 9 Si 0.97 46.56 29.54 68.60 2.03 48.58 16 10 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 13 C 0.50 24.37 7.75 87.65 0.68 25.05 16 14 O -0.58 -33.67 16.08 15.75 0.25 -33.42 16 15 C 0.07 2.95 4.50 71.23 0.32 3.27 16 16 O -0.35 -14.45 9.75 -44.14 -0.43 -14.88 16 17 C 0.47 16.34 4.52 71.24 0.32 16.66 16 18 O -0.52 -19.80 14.33 29.77 0.43 -19.37 16 19 C 0.15 3.57 3.34 44.23 0.15 3.72 16 20 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 21 C -0.12 -1.93 5.32 30.67 0.16 -1.76 16 22 C -0.11 -0.92 5.88 30.62 0.18 -0.74 16 23 C -0.13 -0.67 6.08 30.67 0.19 -0.48 16 24 C 0.10 0.73 6.34 86.35 0.55 1.28 16 25 N -0.61 -11.53 2.98 -799.10 -2.38 -13.91 16 26 C 0.49 12.00 7.50 87.66 0.66 12.66 16 27 C -0.16 -1.95 8.68 71.24 0.62 -1.33 16 28 O -0.58 -21.56 12.84 22.50 0.29 -21.27 16 29 H 0.05 1.49 7.22 -2.38 -0.02 1.47 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.08 2.98 8.07 -2.39 -0.02 2.96 16 33 H 0.09 2.66 6.44 -2.39 -0.02 2.65 16 34 H 0.03 1.85 8.07 -2.39 -0.02 1.83 16 35 H 0.00 0.08 7.42 -2.39 -0.02 0.06 16 36 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 37 H 0.10 3.81 7.39 -2.39 -0.02 3.80 16 38 H 0.12 3.89 7.18 -2.39 -0.02 3.87 16 39 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.29 7.94 -2.39 -0.02 1.27 16 41 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.12 0.22 5.94 -2.39 -0.01 0.21 16 47 H 0.12 0.77 7.93 -2.39 -0.02 0.75 16 48 H 0.08 1.25 8.12 -2.38 -0.02 1.24 16 49 H 0.12 0.75 7.70 -2.39 -0.02 0.73 16 Total: -1.00 -92.93 397.50 5.59 -87.34 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.94 Total: 12.04 kcal Atomic # 6 Polarization: 35.55 SS G_CDS: 6.22 Total: 41.76 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -4.13 Total: -100.78 kcal Atomic # 8 Polarization: -89.48 SS G_CDS: 0.54 Total: -88.94 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -92.93 5.59 -87.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756223158.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.258 kcal (2) G-P(sol) polarization free energy of solvation -92.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds