Wall clock time and date at job start Tue Mar 31 2020 23:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21284 * 119.99950 * 2 1 4 4 N 1.34774 * 120.00339 * 180.02562 * 2 1 3 5 5 C 1.46925 * 120.63017 * 354.10837 * 4 2 1 6 6 C 1.53192 * 108.77647 * 126.36723 * 5 4 2 7 7 C 1.53038 * 109.31325 * 54.63524 * 6 5 4 8 8 C 1.53038 * 109.53719 * 298.63657 * 7 6 5 9 9 C 1.46922 * 120.63279 * 173.82605 * 4 2 1 10 10 H 1.08998 * 109.58866 * 113.84458 * 9 4 2 11 11 C 1.50699 * 109.58757 * 353.42154 * 9 4 2 12 12 O 1.20828 * 119.99966 * 300.66439 * 11 9 4 13 13 O 1.34232 * 120.00104 * 120.66371 * 11 9 4 14 14 C 1.45205 * 116.99937 * 179.97438 * 13 11 9 15 15 H 1.09007 * 109.47251 * 330.00370 * 14 13 11 16 16 C 1.53004 * 109.47141 * 90.00034 * 14 13 11 17 17 C 1.50701 * 109.47089 * 210.00158 * 14 13 11 18 18 O 1.21276 * 120.00114 * 359.97438 * 17 14 13 19 19 N 1.34774 * 119.99797 * 180.02562 * 17 14 13 20 20 C 1.46501 * 120.00109 * 359.97438 * 19 17 14 21 21 C 1.46499 * 120.00103 * 180.02562 * 19 17 14 22 22 C 1.50699 * 109.47237 * 89.99689 * 21 19 17 23 23 H 1.08003 * 120.00041 * 0.02562 * 22 21 19 24 24 C 1.37874 * 119.99947 * 180.02562 * 22 21 19 25 25 N 1.31515 * 120.00308 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00214 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47489 * 89.99832 * 26 24 22 28 28 H 1.48497 * 109.47469 * 209.99968 * 26 24 22 29 29 H 1.48510 * 109.47022 * 329.99806 * 26 24 22 30 30 H 1.09002 * 109.46978 * 182.96678 * 1 2 3 31 31 H 1.09009 * 109.46946 * 302.95964 * 1 2 3 32 32 H 1.08996 * 109.47633 * 62.96453 * 1 2 3 33 33 H 1.08993 * 109.58955 * 246.15903 * 5 4 2 34 34 H 1.09008 * 109.58538 * 6.43787 * 5 4 2 35 35 H 1.09002 * 109.49893 * 174.59061 * 6 5 4 36 36 H 1.09002 * 109.49624 * 294.68640 * 6 5 4 37 37 H 1.09006 * 109.46226 * 58.65467 * 7 6 5 38 38 H 1.08996 * 109.46410 * 178.62577 * 7 6 5 39 39 H 1.09003 * 109.49505 * 181.31539 * 8 7 6 40 40 H 1.08995 * 109.50050 * 301.37781 * 8 7 6 41 41 H 1.08995 * 109.47270 * 180.02562 * 16 14 13 42 42 H 1.08996 * 109.47023 * 300.00408 * 16 14 13 43 43 H 1.09004 * 109.46722 * 59.99509 * 16 14 13 44 44 H 1.08992 * 109.47470 * 90.00173 * 20 19 17 45 45 H 1.08998 * 109.47067 * 210.00301 * 20 19 17 46 46 H 1.09006 * 109.47315 * 329.99994 * 20 19 17 47 47 H 1.08997 * 109.47076 * 209.99837 * 21 19 17 48 48 H 1.09006 * 109.46952 * 330.00029 * 21 19 17 49 49 H 0.96997 * 120.00735 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4662 -2.4443 0.1287 6 6 1.8700 -3.3553 -1.0349 7 6 3.3942 -3.4885 -1.0679 8 6 4.0236 -2.1116 -1.2915 9 6 3.6437 -1.1869 -0.1365 10 1 4.0915 -1.5562 0.7861 11 6 4.1434 0.2059 -0.4216 12 8 3.7586 0.7968 -1.4028 13 8 5.0160 0.7902 0.4144 14 6 5.4548 2.1326 0.0768 15 1 5.4427 2.2572 -1.0061 16 6 4.5128 3.1535 0.7182 17 6 6.8547 2.3478 0.5916 18 8 7.4261 1.4579 1.1850 19 7 7.4712 3.5298 0.3934 20 6 6.7807 4.6051 -0.3230 21 6 8.8323 3.7390 0.8933 22 6 9.8244 3.3304 -0.1648 23 1 9.4760 2.9530 -1.1149 24 6 11.1770 3.4382 0.0799 25 7 11.6013 3.8973 1.2370 26 14 12.4069 2.9324 -1.2319 27 1 12.7217 4.1011 -2.0923 28 1 13.6509 2.4461 -0.5830 29 1 11.8257 1.8478 -2.0633 30 1 -0.3633 -1.0263 0.0532 31 1 -0.3633 0.5591 0.8623 32 1 -0.3634 0.4671 -0.9153 33 1 1.7326 -2.9183 1.0733 34 1 0.3912 -2.2660 0.0999 35 1 1.4215 -4.3394 -0.8991 36 1 1.5222 -2.9228 -1.9731 37 1 3.7436 -3.8979 -0.1200 38 1 3.6829 -4.1558 -1.8800 39 1 5.1081 -2.2107 -1.3383 40 1 3.6561 -1.6912 -2.2275 41 1 4.8419 4.1611 0.4644 42 1 3.5004 2.9977 0.3459 43 1 4.5249 3.0288 1.8010 44 1 6.2287 5.2195 0.3881 45 1 7.5121 5.2220 -0.8450 46 1 6.0875 4.1738 -1.0453 47 1 8.9725 4.7924 1.1354 48 1 8.9871 3.1366 1.7885 49 1 12.5529 3.9735 1.4092 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756231118.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:33 Heat of formation + Delta-G solvation = -133.227325 kcal Electronic energy + Delta-G solvation = -31441.447332 eV Core-core repulsion = 27176.874808 eV Total energy + Delta-G solvation = -4264.572524 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.32963 -39.76667 -38.56646 -37.71540 -36.01368 -34.83960 -33.47288 -32.86804 -32.30738 -31.19066 -29.76093 -27.59913 -26.30675 -26.01898 -24.65767 -23.94544 -22.50620 -21.52720 -20.92277 -19.23324 -18.65716 -18.13058 -17.07843 -16.68563 -16.46826 -16.15745 -15.83431 -15.54079 -15.41442 -15.12303 -14.70814 -14.49543 -14.46097 -14.09448 -13.97675 -13.70499 -13.44007 -13.16194 -13.07812 -12.66225 -12.51191 -12.29419 -12.23786 -12.07646 -11.91029 -11.86463 -11.54024 -11.43198 -11.30190 -11.22396 -11.09275 -11.02036 -10.87301 -10.56362 -10.39332 -10.13204 -10.10520 -9.78313 -9.60218 -9.05182 -8.76823 -8.41413 -7.64231 -6.02118 -4.06840 2.10755 2.34904 2.64043 2.95225 3.32224 3.37452 3.39646 3.45543 3.94344 4.18944 4.26786 4.40933 4.46663 4.50095 4.57930 4.71889 4.81809 4.90253 5.00706 5.02433 5.07732 5.11641 5.26752 5.30895 5.32168 5.33467 5.39129 5.41328 5.53152 5.61996 5.64092 5.67038 5.82898 5.90724 5.95405 5.99418 6.03503 6.24431 6.42228 6.75126 6.97858 7.07073 7.45350 7.54243 7.84763 7.94170 8.09782 8.25067 8.38682 8.91137 9.07773 9.58015 11.06029 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017555 B = 0.002808 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.579595 B = 9969.154936 C =11000.336790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.506 3.494 3 O -0.511 6.511 4 N -0.607 5.607 5 C 0.105 3.895 6 C -0.139 4.139 7 C -0.117 4.117 8 C -0.127 4.127 9 C 0.157 3.843 10 H 0.105 0.895 11 C 0.480 3.520 12 O -0.497 6.497 13 O -0.327 6.327 14 C 0.081 3.919 15 H 0.101 0.899 16 C -0.172 4.172 17 C 0.509 3.491 18 O -0.523 6.523 19 N -0.597 5.597 20 C 0.077 3.923 21 C 0.246 3.754 22 C -0.527 4.527 23 H 0.057 0.943 24 C 0.061 3.939 25 N -0.895 5.895 26 Si 0.899 3.101 27 H -0.280 1.280 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.077 0.923 46 H 0.059 0.941 47 H 0.036 0.964 48 H 0.045 0.955 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.949 -12.822 -3.332 29.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.295 3.705 3 O -0.386 6.386 4 N -0.346 5.346 5 C -0.017 4.017 6 C -0.177 4.177 7 C -0.155 4.155 8 C -0.165 4.165 9 C 0.052 3.948 10 H 0.122 0.878 11 C 0.322 3.678 12 O -0.384 6.384 13 O -0.242 6.242 14 C 0.022 3.978 15 H 0.119 0.881 16 C -0.229 4.229 17 C 0.293 3.707 18 O -0.399 6.399 19 N -0.330 5.330 20 C -0.067 4.067 21 C 0.128 3.872 22 C -0.566 4.566 23 H 0.076 0.924 24 C -0.141 4.141 25 N -0.534 5.534 26 Si 0.726 3.274 27 H -0.206 1.206 28 H -0.211 1.211 29 H -0.199 1.199 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.077 0.923 47 H 0.053 0.947 48 H 0.063 0.937 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.228 -12.439 -3.179 28.307 hybrid contribution 0.715 -0.155 -0.845 1.117 sum -24.513 -12.594 -4.024 27.851 Atomic orbital electron populations 1.21995 0.91183 1.04451 1.05541 1.20945 0.90942 0.83062 0.75576 1.90777 1.68643 1.30968 1.48222 1.48113 1.05153 1.07080 1.74205 1.21979 0.97451 0.83071 0.99202 1.21973 0.96756 0.99930 0.99024 1.21505 0.94844 0.96106 1.03014 1.21835 1.02318 0.94795 0.97569 1.20557 0.81413 0.91084 1.01713 0.87763 1.22607 0.76350 0.87589 0.81291 1.90610 1.54508 1.63818 1.29467 1.86520 1.56794 1.30607 1.50265 1.22455 0.93502 0.80206 1.01606 0.88135 1.22356 1.00245 0.98530 1.01805 1.19892 0.86189 0.83360 0.81237 1.90679 1.66376 1.41631 1.41237 1.48040 1.17675 1.11751 1.55560 1.21872 0.97557 0.91240 0.96017 1.19336 0.74716 0.97361 0.95807 1.21445 0.90941 1.43352 1.00868 0.92429 1.24933 0.98290 0.95146 0.95727 1.69931 1.15036 1.46079 1.22343 0.86484 0.80552 0.78817 0.81502 1.20620 1.21059 1.19882 0.89907 0.88633 0.88542 0.90633 0.88450 0.90172 0.91096 0.91068 0.90696 0.89470 0.90112 0.89605 0.90092 0.91733 0.93064 0.90447 0.92266 0.94652 0.93671 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 10.13 36.00 0.36 -0.74 16 2 C 0.51 5.83 7.48 -10.99 -0.08 5.74 16 3 O -0.51 -8.31 11.52 -20.44 -0.24 -8.54 16 4 N -0.61 -5.95 2.98 -166.79 -0.50 -6.45 16 5 C 0.10 0.54 6.36 -3.71 -0.02 0.52 16 6 C -0.14 -0.65 6.08 -26.61 -0.16 -0.81 16 7 C -0.12 -0.73 5.89 -26.69 -0.16 -0.88 16 8 C -0.13 -1.24 5.30 -26.84 -0.14 -1.38 16 9 C 0.16 1.90 3.32 -68.98 -0.23 1.67 16 10 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 11 C 0.48 8.17 4.57 36.01 0.16 8.33 16 12 O -0.50 -9.36 13.67 -26.99 -0.37 -9.73 16 13 O -0.33 -6.41 9.41 -46.41 -0.44 -6.84 16 14 C 0.08 1.57 2.18 -27.88 -0.06 1.51 16 15 H 0.10 1.93 6.42 -51.93 -0.33 1.59 16 16 C -0.17 -2.84 9.18 37.16 0.34 -2.50 16 17 C 0.51 11.88 7.15 -10.99 -0.08 11.80 16 18 O -0.52 -14.41 16.08 -14.10 -0.23 -14.64 16 19 N -0.60 -13.57 2.86 -182.96 -0.52 -14.09 16 20 C 0.08 1.32 8.80 59.85 0.53 1.85 16 21 C 0.25 6.69 5.16 -5.19 -0.03 6.67 16 22 C -0.53 -15.42 9.39 -34.44 -0.32 -15.74 16 23 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 24 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 25 N -0.89 -27.06 13.29 55.43 0.74 -26.33 16 26 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 28 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 29 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 30 H 0.08 0.28 5.09 -51.93 -0.26 0.01 16 31 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.10 0.28 5.04 -51.92 -0.26 0.02 16 35 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 0.89 7.95 -51.93 -0.41 0.47 16 41 H 0.09 1.24 4.53 -51.93 -0.24 1.01 16 42 H 0.08 1.36 6.84 -51.93 -0.36 1.01 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.75 6.95 -51.93 -0.36 0.39 16 45 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 46 H 0.06 0.90 6.01 -51.93 -0.31 0.59 16 47 H 0.04 0.95 8.07 -51.93 -0.42 0.54 16 48 H 0.05 1.37 7.42 -51.93 -0.39 0.99 16 49 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 LS Contribution 387.05 15.07 5.83 5.83 Total: -1.00 -39.10 387.05 -8.26 -47.35 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -7.53 Total: -1.58 kcal Atomic # 6 Polarization: 17.69 SS G_CDS: 0.01 Total: 17.71 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.28 Total: -46.87 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -1.27 Total: -39.75 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -39.10 -8.26 -47.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756231118.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.873 kcal (2) G-P(sol) polarization free energy of solvation -39.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds