Wall clock time and date at job start Tue Mar 31 2020 23:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21284 * 119.99950 * 2 1 4 4 N 1.34774 * 120.00339 * 180.02562 * 2 1 3 5 5 C 1.46925 * 120.63017 * 354.10837 * 4 2 1 6 6 C 1.53192 * 108.77647 * 126.36723 * 5 4 2 7 7 C 1.53038 * 109.31325 * 54.63524 * 6 5 4 8 8 C 1.53038 * 109.53719 * 298.63657 * 7 6 5 9 9 C 1.46922 * 120.63279 * 173.82605 * 4 2 1 10 10 H 1.08998 * 109.58866 * 113.84458 * 9 4 2 11 11 C 1.50699 * 109.58757 * 353.42154 * 9 4 2 12 12 O 1.20828 * 119.99966 * 300.66439 * 11 9 4 13 13 O 1.34232 * 120.00104 * 120.66371 * 11 9 4 14 14 C 1.45205 * 116.99937 * 179.97438 * 13 11 9 15 15 H 1.09007 * 109.47251 * 330.00370 * 14 13 11 16 16 C 1.53004 * 109.47141 * 90.00034 * 14 13 11 17 17 C 1.50701 * 109.47089 * 210.00158 * 14 13 11 18 18 O 1.21276 * 120.00114 * 359.97438 * 17 14 13 19 19 N 1.34774 * 119.99797 * 180.02562 * 17 14 13 20 20 C 1.46501 * 120.00109 * 359.97438 * 19 17 14 21 21 C 1.46499 * 120.00103 * 180.02562 * 19 17 14 22 22 C 1.50699 * 109.47237 * 89.99689 * 21 19 17 23 23 H 1.08003 * 120.00041 * 0.02562 * 22 21 19 24 24 C 1.37874 * 119.99947 * 180.02562 * 22 21 19 25 25 N 1.31515 * 120.00308 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00214 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47489 * 89.99832 * 26 24 22 28 28 H 1.48497 * 109.47469 * 209.99968 * 26 24 22 29 29 H 1.48510 * 109.47022 * 329.99806 * 26 24 22 30 30 H 1.09002 * 109.46978 * 182.96678 * 1 2 3 31 31 H 1.09009 * 109.46946 * 302.95964 * 1 2 3 32 32 H 1.08996 * 109.47633 * 62.96453 * 1 2 3 33 33 H 1.08993 * 109.58955 * 246.15903 * 5 4 2 34 34 H 1.09008 * 109.58538 * 6.43787 * 5 4 2 35 35 H 1.09002 * 109.49893 * 174.59061 * 6 5 4 36 36 H 1.09002 * 109.49624 * 294.68640 * 6 5 4 37 37 H 1.09006 * 109.46226 * 58.65467 * 7 6 5 38 38 H 1.08996 * 109.46410 * 178.62577 * 7 6 5 39 39 H 1.09003 * 109.49505 * 181.31539 * 8 7 6 40 40 H 1.08995 * 109.50050 * 301.37781 * 8 7 6 41 41 H 1.08995 * 109.47270 * 180.02562 * 16 14 13 42 42 H 1.08996 * 109.47023 * 300.00408 * 16 14 13 43 43 H 1.09004 * 109.46722 * 59.99509 * 16 14 13 44 44 H 1.08992 * 109.47470 * 90.00173 * 20 19 17 45 45 H 1.08998 * 109.47067 * 210.00301 * 20 19 17 46 46 H 1.09006 * 109.47315 * 329.99994 * 20 19 17 47 47 H 1.08997 * 109.47076 * 209.99837 * 21 19 17 48 48 H 1.09006 * 109.46952 * 330.00029 * 21 19 17 49 49 H 0.96997 * 120.00735 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4662 -2.4443 0.1287 6 6 1.8700 -3.3553 -1.0349 7 6 3.3942 -3.4885 -1.0679 8 6 4.0236 -2.1116 -1.2915 9 6 3.6437 -1.1869 -0.1365 10 1 4.0915 -1.5562 0.7861 11 6 4.1434 0.2059 -0.4216 12 8 3.7586 0.7968 -1.4028 13 8 5.0160 0.7902 0.4144 14 6 5.4548 2.1326 0.0768 15 1 5.4427 2.2572 -1.0061 16 6 4.5128 3.1535 0.7182 17 6 6.8547 2.3478 0.5916 18 8 7.4261 1.4579 1.1850 19 7 7.4712 3.5298 0.3934 20 6 6.7807 4.6051 -0.3230 21 6 8.8323 3.7390 0.8933 22 6 9.8244 3.3304 -0.1648 23 1 9.4760 2.9530 -1.1149 24 6 11.1770 3.4382 0.0799 25 7 11.6013 3.8973 1.2370 26 14 12.4069 2.9324 -1.2319 27 1 12.7217 4.1011 -2.0923 28 1 13.6509 2.4461 -0.5830 29 1 11.8257 1.8478 -2.0633 30 1 -0.3633 -1.0263 0.0532 31 1 -0.3633 0.5591 0.8623 32 1 -0.3634 0.4671 -0.9153 33 1 1.7326 -2.9183 1.0733 34 1 0.3912 -2.2660 0.0999 35 1 1.4215 -4.3394 -0.8991 36 1 1.5222 -2.9228 -1.9731 37 1 3.7436 -3.8979 -0.1200 38 1 3.6829 -4.1558 -1.8800 39 1 5.1081 -2.2107 -1.3383 40 1 3.6561 -1.6912 -2.2275 41 1 4.8419 4.1611 0.4644 42 1 3.5004 2.9977 0.3459 43 1 4.5249 3.0288 1.8010 44 1 6.2287 5.2195 0.3881 45 1 7.5121 5.2220 -0.8450 46 1 6.0875 4.1738 -1.0453 47 1 8.9725 4.7924 1.1354 48 1 8.9871 3.1366 1.7885 49 1 12.5529 3.9735 1.4092 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756231118.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:32 Heat of formation + Delta-G solvation = -158.766752 kcal Electronic energy + Delta-G solvation = -31442.554804 eV Core-core repulsion = 27176.874808 eV Total energy + Delta-G solvation = -4265.679996 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.41046 -41.19294 -40.08857 -38.50081 -37.45422 -36.76832 -34.95629 -34.19688 -33.36527 -32.54647 -30.33921 -29.59804 -27.81897 -27.00160 -25.97074 -25.22633 -24.09379 -22.44427 -21.92575 -20.51893 -19.96967 -19.30486 -18.72204 -18.20165 -17.95814 -17.44686 -17.26485 -16.75608 -16.69245 -16.48409 -16.18988 -15.76359 -15.29027 -15.10767 -14.94696 -14.81700 -14.61079 -14.35608 -14.27047 -14.02665 -13.94836 -13.64426 -13.53504 -13.34226 -13.09361 -13.06350 -12.90290 -12.80289 -12.62752 -12.58200 -12.45810 -12.23860 -12.13872 -11.88563 -11.79103 -11.75299 -11.63788 -11.32054 -10.68209 -10.67121 -10.65379 -9.81255 -9.57049 -8.26170 -6.41201 1.04495 1.25865 1.34566 1.37686 1.47787 1.55784 1.56227 2.01093 2.28034 2.40482 3.03439 3.37494 3.37910 3.63887 3.73505 3.74101 3.81034 3.84158 3.92919 4.05088 4.13349 4.26144 4.28883 4.46957 4.48271 4.60872 4.61519 4.61865 4.68897 4.74500 4.81088 4.85566 4.90958 4.93044 5.02445 5.05719 5.13652 5.15801 5.20459 5.33440 5.41226 5.44367 5.48644 5.74734 6.00334 6.26622 6.50578 6.66598 6.73368 7.08918 7.14969 7.31927 8.81485 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017555 B = 0.002808 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.579595 B = 9969.154936 C =11000.336790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.489 3.511 3 O -0.567 6.567 4 N -0.604 5.604 5 C 0.097 3.903 6 C -0.134 4.134 7 C -0.113 4.113 8 C -0.123 4.123 9 C 0.156 3.844 10 H 0.109 0.891 11 C 0.473 3.527 12 O -0.520 6.520 13 O -0.350 6.350 14 C 0.091 3.909 15 H 0.103 0.897 16 C -0.157 4.157 17 C 0.501 3.499 18 O -0.578 6.578 19 N -0.598 5.598 20 C 0.069 3.931 21 C 0.260 3.740 22 C -0.549 4.549 23 H 0.051 0.949 24 C 0.010 3.990 25 N -0.926 5.926 26 Si 0.969 3.031 27 H -0.261 1.261 28 H -0.277 1.277 29 H -0.275 1.275 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.128 0.872 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.035 0.965 48 H 0.002 0.998 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.130 -14.192 -4.462 31.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.280 3.720 3 O -0.447 6.447 4 N -0.341 5.341 5 C -0.023 4.023 6 C -0.172 4.172 7 C -0.151 4.151 8 C -0.161 4.161 9 C 0.051 3.949 10 H 0.127 0.873 11 C 0.317 3.683 12 O -0.408 6.408 13 O -0.266 6.266 14 C 0.032 3.968 15 H 0.121 0.879 16 C -0.214 4.214 17 C 0.288 3.712 18 O -0.458 6.458 19 N -0.331 5.331 20 C -0.072 4.072 21 C 0.139 3.861 22 C -0.587 4.587 23 H 0.069 0.931 24 C -0.189 4.189 25 N -0.565 5.565 26 Si 0.793 3.207 27 H -0.186 1.186 28 H -0.203 1.203 29 H -0.200 1.200 30 H 0.137 0.863 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.145 0.855 35 H 0.130 0.870 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.127 0.873 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.053 0.947 48 H 0.020 0.980 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -27.467 -13.819 -4.329 31.050 hybrid contribution 1.363 0.253 -0.470 1.463 sum -26.104 -13.566 -4.798 29.807 Atomic orbital electron populations 1.22017 0.87039 1.06987 1.05945 1.21973 0.93030 0.82578 0.74418 1.90733 1.69928 1.33007 1.51017 1.48365 1.03974 1.08631 1.73144 1.22404 0.98627 0.80996 1.00231 1.21980 0.95353 1.01350 0.98474 1.21541 0.96030 0.93524 1.03984 1.21851 1.02008 0.96484 0.95793 1.20672 0.83365 0.88123 1.02780 0.87343 1.23594 0.75237 0.88962 0.80510 1.90570 1.55086 1.64759 1.30411 1.86531 1.57830 1.30724 1.51501 1.22294 0.91432 0.81561 1.01486 0.87921 1.22280 0.99342 0.98692 1.01132 1.20619 0.87525 0.82692 0.80339 1.90634 1.67961 1.43413 1.43742 1.48037 1.16484 1.13121 1.55421 1.22211 0.97898 0.90160 0.96971 1.18877 0.77044 0.96113 0.94032 1.21674 0.92025 1.44032 1.00991 0.93116 1.25852 1.00233 0.94772 0.98081 1.70040 1.15825 1.46528 1.24125 0.85392 0.77776 0.78850 0.78643 1.18598 1.20264 1.20044 0.86335 0.87908 0.88268 0.89047 0.85490 0.87031 0.91735 0.90074 0.89560 0.90562 0.91706 0.87295 0.90137 0.92233 0.89753 0.90245 0.89967 0.94715 0.98034 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 10.13 71.23 0.72 -0.94 16 2 C 0.49 10.84 7.48 87.66 0.66 11.49 16 3 O -0.57 -18.75 11.52 21.82 0.25 -18.50 16 4 N -0.60 -11.02 2.98 -800.01 -2.38 -13.40 16 5 C 0.10 0.66 6.36 86.36 0.55 1.21 16 6 C -0.13 -0.79 6.08 30.67 0.19 -0.60 16 7 C -0.11 -1.16 5.89 30.62 0.18 -0.98 16 8 C -0.12 -2.39 5.30 30.53 0.16 -2.23 16 9 C 0.16 3.80 3.32 44.08 0.15 3.95 16 10 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 11 C 0.47 16.73 4.57 71.24 0.33 17.05 16 12 O -0.52 -20.27 13.67 29.83 0.41 -19.86 16 13 O -0.35 -14.36 9.41 -44.60 -0.42 -14.78 16 14 C 0.09 3.62 2.18 29.85 0.07 3.69 16 15 H 0.10 4.03 6.42 -2.38 -0.02 4.01 16 16 C -0.16 -5.20 9.18 71.98 0.66 -4.53 16 17 C 0.50 24.36 7.15 87.66 0.63 24.99 16 18 O -0.58 -33.69 16.08 15.78 0.25 -33.44 16 19 N -0.60 -27.88 2.86 -851.14 -2.43 -30.32 16 20 C 0.07 2.31 8.80 127.77 1.12 3.44 16 21 C 0.26 14.68 5.16 85.63 0.44 15.12 16 22 C -0.55 -32.93 9.39 25.60 0.24 -32.68 16 23 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 24 C 0.01 0.59 5.46 84.65 0.46 1.05 16 25 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 26 Si 0.97 46.07 29.54 68.60 2.03 48.10 16 27 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 28 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 29 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 30 H 0.12 0.28 5.09 -2.39 -0.01 0.26 16 31 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.13 0.11 5.04 -2.38 -0.01 0.09 16 35 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.06 1.46 7.95 -2.39 -0.02 1.44 16 41 H 0.11 2.99 4.53 -2.39 -0.01 2.98 16 42 H 0.08 2.73 6.84 -2.39 -0.02 2.71 16 43 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 44 H 0.08 2.29 6.95 -2.39 -0.02 2.27 16 45 H 0.08 2.65 8.07 -2.39 -0.02 2.63 16 46 H 0.08 2.39 6.01 -2.38 -0.01 2.37 16 47 H 0.03 1.94 8.07 -2.39 -0.02 1.92 16 48 H 0.00 0.10 7.42 -2.38 -0.02 0.08 16 49 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -90.92 387.05 5.50 -85.42 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.96 Total: 13.42 kcal Atomic # 6 Polarization: 33.47 SS G_CDS: 6.55 Total: 40.02 kcal Atomic # 7 Polarization: -95.86 SS G_CDS: -4.53 Total: -100.39 kcal Atomic # 8 Polarization: -87.07 SS G_CDS: 0.49 Total: -86.58 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -90.92 5.50 -85.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756231118.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.342 kcal (2) G-P(sol) polarization free energy of solvation -90.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds