Wall clock time and date at job start Tue Mar 31 2020 23:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 120.00608 * 2 1 4 4 N 1.34775 * 119.99760 * 179.97438 * 2 1 3 5 5 C 1.46924 * 120.63342 * 5.62902 * 4 2 1 6 6 C 1.53184 * 108.77882 * 233.62695 * 5 4 2 7 7 C 1.53040 * 109.31123 * 305.36120 * 6 5 4 8 8 C 1.53046 * 109.53772 * 61.36494 * 7 6 5 9 9 C 1.46924 * 120.63224 * 185.64221 * 4 2 1 10 10 H 1.08999 * 109.59222 * 246.30440 * 9 4 2 11 11 C 1.50696 * 109.58784 * 6.59131 * 9 4 2 12 12 O 1.20832 * 120.00144 * 49.53031 * 11 9 4 13 13 O 1.34231 * 120.00183 * 229.53424 * 11 9 4 14 14 C 1.45199 * 117.00118 * 179.97438 * 13 11 9 15 15 H 1.09002 * 109.47214 * 30.00678 * 14 13 11 16 16 C 1.52992 * 109.47797 * 270.00513 * 14 13 11 17 17 C 1.50706 * 109.47093 * 150.00093 * 14 13 11 18 18 O 1.21283 * 119.99324 * 5.00710 * 17 14 13 19 19 N 1.34771 * 120.00335 * 185.00557 * 17 14 13 20 20 C 1.46500 * 119.99835 * 0.02562 * 19 17 14 21 21 C 1.46503 * 120.00163 * 180.02562 * 19 17 14 22 22 C 1.50700 * 109.46940 * 269.99753 * 21 19 17 23 23 H 1.08001 * 119.99691 * 0.02562 * 22 21 19 24 24 C 1.37871 * 120.00130 * 179.97438 * 22 21 19 25 25 N 1.31521 * 119.99770 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00277 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.46799 * 0.02562 * 26 24 22 28 28 H 1.48495 * 109.47395 * 120.00268 * 26 24 22 29 29 H 1.48506 * 109.47339 * 240.00429 * 26 24 22 30 30 H 1.08992 * 109.47175 * 185.50518 * 1 2 3 31 31 H 1.09006 * 109.46948 * 305.50721 * 1 2 3 32 32 H 1.09000 * 109.47135 * 65.50275 * 1 2 3 33 33 H 1.09008 * 109.58435 * 353.41451 * 5 4 2 34 34 H 1.09003 * 109.58923 * 113.69375 * 5 4 2 35 35 H 1.09002 * 109.49612 * 65.31156 * 6 5 4 36 36 H 1.09000 * 109.50285 * 185.37437 * 6 5 4 37 37 H 1.09004 * 109.45848 * 181.38425 * 7 6 5 38 38 H 1.09001 * 109.46314 * 301.35582 * 7 6 5 39 39 H 1.08998 * 109.49910 * 178.68331 * 8 7 6 40 40 H 1.09002 * 109.49537 * 58.58844 * 8 7 6 41 41 H 1.08998 * 109.47126 * 60.00014 * 16 14 13 42 42 H 1.08998 * 109.47381 * 180.02562 * 16 14 13 43 43 H 1.08997 * 109.47014 * 299.99918 * 16 14 13 44 44 H 1.09001 * 109.47316 * 270.00072 * 20 19 17 45 45 H 1.09002 * 109.47213 * 150.00206 * 20 19 17 46 46 H 1.08995 * 109.47216 * 29.99809 * 20 19 17 47 47 H 1.09003 * 109.46873 * 29.99334 * 21 19 17 48 48 H 1.08992 * 109.47178 * 149.99839 * 21 19 17 49 49 H 0.96999 * 119.99794 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4655 -2.4446 -0.1229 6 6 1.8740 -3.3530 1.0410 7 6 3.3983 -3.4863 1.0681 8 6 4.0288 -2.1089 1.2860 9 6 3.6446 -1.1865 0.1248 10 1 4.0852 -1.5576 -0.8005 11 6 4.1467 0.2075 0.3998 12 8 3.6422 0.8696 1.2756 13 8 5.1545 0.7137 -0.3283 14 6 5.5859 2.0627 -0.0085 15 1 5.4174 2.2566 1.0508 16 6 4.7872 3.0653 -0.8438 17 6 7.0537 2.2074 -0.3182 18 8 7.6541 1.2968 -0.8485 19 7 7.6991 3.3486 -0.0060 20 6 6.9739 4.4483 0.6350 21 6 9.1258 3.4894 -0.3076 22 6 9.9375 3.0059 0.8664 23 1 9.4403 2.6308 1.7488 24 6 11.3147 3.0413 0.8137 25 7 11.9201 3.4976 -0.2610 26 14 12.3209 2.4412 2.2687 27 1 11.4080 1.9804 3.3454 28 1 13.1882 1.3147 1.8399 29 1 13.1664 3.5511 2.7773 30 1 -0.3633 -1.0228 0.0986 31 1 -0.3633 0.5969 0.8366 32 1 -0.3633 0.4261 -0.9352 33 1 0.3907 -2.2665 -0.0876 34 1 1.7262 -2.9196 -1.0688 35 1 1.5300 -2.9184 1.9796 36 1 1.4245 -4.3372 0.9095 37 1 3.6902 -4.1520 1.8804 38 1 3.7438 -3.8977 0.1196 39 1 5.1134 -2.2079 1.3286 40 1 3.6646 -1.6862 2.2224 41 1 3.7257 2.9607 -0.6197 42 1 5.1115 4.0779 -0.6040 43 1 4.9558 2.8715 -1.9030 44 1 6.5607 5.1058 -0.1299 45 1 7.6571 5.0133 1.2692 46 1 6.1642 4.0443 1.2427 47 1 9.3712 2.8958 -1.1882 48 1 9.3546 4.5374 -0.5005 49 1 12.8891 3.5229 -0.2980 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756231119.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:35 Heat of formation + Delta-G solvation = -126.613773 kcal Electronic energy + Delta-G solvation = -31430.049759 eV Core-core repulsion = 27165.764021 eV Total energy + Delta-G solvation = -4264.285738 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.32539 -39.75687 -38.54258 -37.66808 -36.01314 -34.81992 -33.42422 -32.85064 -32.28945 -31.21452 -29.71795 -27.64313 -26.27015 -25.98240 -24.65802 -23.98191 -22.51589 -21.50787 -20.91190 -19.19402 -18.64388 -18.16434 -17.06486 -16.65335 -16.47703 -16.09751 -15.86818 -15.60688 -15.40082 -15.09462 -14.69879 -14.49130 -14.43341 -14.11144 -13.96265 -13.67934 -13.43453 -13.10480 -13.08438 -12.70001 -12.47955 -12.29276 -12.23739 -12.06189 -11.92121 -11.83364 -11.53881 -11.49722 -11.29228 -11.23921 -11.13359 -11.07226 -10.85460 -10.59595 -10.45137 -10.13994 -10.10925 -9.59149 -9.51934 -8.96813 -8.77418 -8.42240 -7.65132 -6.02850 -4.07456 2.13658 2.35328 2.66998 2.97276 3.31405 3.36478 3.39553 3.44867 3.93674 4.21698 4.29217 4.42875 4.46415 4.52254 4.59214 4.74048 4.82058 4.90286 5.00750 5.01269 5.11632 5.12185 5.23353 5.29294 5.31901 5.33195 5.40407 5.43457 5.55462 5.63170 5.65100 5.67473 5.80488 5.90791 5.95172 5.97082 6.05630 6.22197 6.37467 6.72885 7.02298 7.06458 7.44480 7.53471 7.88163 7.93861 8.13769 8.24383 8.37706 8.90592 9.06874 9.57480 11.05345 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016934 B = 0.002840 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.040797 B = 9856.997307 C =10934.576753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.502 3.498 3 O -0.508 6.508 4 N -0.610 5.610 5 C 0.106 3.894 6 C -0.139 4.139 7 C -0.117 4.117 8 C -0.126 4.126 9 C 0.158 3.842 10 H 0.105 0.895 11 C 0.469 3.531 12 O -0.479 6.479 13 O -0.328 6.328 14 C 0.080 3.920 15 H 0.101 0.899 16 C -0.167 4.167 17 C 0.508 3.492 18 O -0.523 6.523 19 N -0.596 5.596 20 C 0.077 3.923 21 C 0.246 3.754 22 C -0.526 4.526 23 H 0.058 0.942 24 C 0.061 3.939 25 N -0.895 5.895 26 Si 0.899 3.101 27 H -0.273 1.273 28 H -0.282 1.282 29 H -0.283 1.283 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.077 0.923 46 H 0.058 0.942 47 H 0.045 0.955 48 H 0.036 0.964 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.234 -11.787 0.800 28.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.291 3.709 3 O -0.382 6.382 4 N -0.348 5.348 5 C -0.016 4.016 6 C -0.177 4.177 7 C -0.155 4.155 8 C -0.164 4.164 9 C 0.054 3.946 10 H 0.123 0.877 11 C 0.310 3.690 12 O -0.365 6.365 13 O -0.243 6.243 14 C 0.021 3.979 15 H 0.119 0.881 16 C -0.225 4.225 17 C 0.293 3.707 18 O -0.399 6.399 19 N -0.330 5.330 20 C -0.067 4.067 21 C 0.127 3.873 22 C -0.565 4.565 23 H 0.076 0.924 24 C -0.141 4.141 25 N -0.534 5.534 26 Si 0.726 3.274 27 H -0.198 1.198 28 H -0.208 1.208 29 H -0.209 1.209 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.096 0.904 46 H 0.077 0.923 47 H 0.063 0.937 48 H 0.054 0.946 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -25.523 -11.389 0.694 27.958 hybrid contribution 0.571 -0.192 0.924 1.103 sum -24.952 -11.581 1.618 27.556 Atomic orbital electron populations 1.21998 0.91565 1.04325 1.05330 1.20869 0.90766 0.83198 0.76105 1.90886 1.68878 1.31357 1.47102 1.48027 1.05088 1.07021 1.74654 1.21948 0.97421 0.83108 0.99108 1.21975 0.96740 0.99949 0.99046 1.21507 0.94832 0.96078 1.03036 1.21899 1.02394 0.94830 0.97292 1.20595 0.81370 0.90983 1.01695 0.87671 1.22688 0.77750 0.88244 0.80301 1.90641 1.53990 1.59740 1.32085 1.86527 1.48707 1.31542 1.57567 1.22480 0.93448 0.80133 1.01833 0.88116 1.22234 1.01183 0.98531 1.00522 1.19874 0.87039 0.83442 0.80342 1.90682 1.67945 1.38828 1.42400 1.48053 1.12474 1.13554 1.58932 1.21833 0.97033 0.90561 0.97250 1.19343 0.72668 0.97669 0.97582 1.21480 0.91221 1.42368 1.01454 0.92377 1.24938 0.97674 0.95228 0.96286 1.69947 1.09378 1.46451 1.27602 0.86430 0.80025 0.78476 0.82426 1.19797 1.20842 1.20937 0.90061 0.88703 0.88777 0.88540 0.90716 0.91123 0.90206 0.90694 0.91050 0.89343 0.90298 0.90315 0.89878 0.91594 0.93166 0.90396 0.92330 0.93667 0.94637 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 10.08 36.00 0.36 -0.79 16 2 C 0.50 5.88 7.41 -10.99 -0.08 5.80 16 3 O -0.51 -8.39 11.73 -20.13 -0.24 -8.63 16 4 N -0.61 -6.02 2.97 -166.54 -0.49 -6.52 16 5 C 0.11 0.56 6.35 -3.72 -0.02 0.53 16 6 C -0.14 -0.67 6.08 -26.62 -0.16 -0.83 16 7 C -0.12 -0.74 5.88 -26.69 -0.16 -0.90 16 8 C -0.13 -1.24 5.35 -26.61 -0.14 -1.38 16 9 C 0.16 1.91 3.35 -68.75 -0.23 1.68 16 10 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 11 C 0.47 7.94 5.06 36.00 0.18 8.12 16 12 O -0.48 -9.01 12.95 -27.26 -0.35 -9.36 16 13 O -0.33 -6.35 9.42 -45.89 -0.43 -6.78 16 14 C 0.08 1.53 2.16 -27.88 -0.06 1.47 16 15 H 0.10 1.91 6.14 -51.93 -0.32 1.59 16 16 C -0.17 -2.72 9.27 37.15 0.34 -2.38 16 17 C 0.51 11.77 7.10 -10.98 -0.08 11.69 16 18 O -0.52 -14.29 16.09 -14.05 -0.23 -14.51 16 19 N -0.60 -13.50 2.86 -182.95 -0.52 -14.02 16 20 C 0.08 1.32 8.92 59.85 0.53 1.86 16 21 C 0.25 6.65 5.16 -5.19 -0.03 6.63 16 22 C -0.53 -15.35 9.39 -34.44 -0.32 -15.68 16 23 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 24 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 25 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 26 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 27 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 28 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 30 H 0.08 0.30 5.17 -51.93 -0.27 0.03 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.29 5.06 -51.92 -0.26 0.03 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.30 7.53 -51.93 -0.39 0.91 16 42 H 0.08 1.19 5.12 -51.93 -0.27 0.92 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.73 7.02 -51.93 -0.36 0.37 16 45 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 46 H 0.06 0.89 6.08 -51.93 -0.32 0.57 16 47 H 0.05 1.37 7.42 -51.93 -0.39 0.98 16 48 H 0.04 0.95 8.07 -51.93 -0.42 0.54 16 49 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 388.56 15.07 5.86 5.86 Total: -1.00 -38.92 388.56 -8.26 -47.18 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -7.61 Total: -1.71 kcal Atomic # 6 Polarization: 17.45 SS G_CDS: 0.04 Total: 17.49 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.28 Total: -46.79 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -1.25 Total: -39.28 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.92 -8.26 -47.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756231119.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.438 kcal (2) G-P(sol) polarization free energy of solvation -38.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds