Wall clock time and date at job start Tue Mar 31 2020 23:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 120.00608 * 2 1 4 4 N 1.34775 * 119.99760 * 179.97438 * 2 1 3 5 5 C 1.46924 * 120.63342 * 5.62902 * 4 2 1 6 6 C 1.53184 * 108.77882 * 233.62695 * 5 4 2 7 7 C 1.53040 * 109.31123 * 305.36120 * 6 5 4 8 8 C 1.53046 * 109.53772 * 61.36494 * 7 6 5 9 9 C 1.46924 * 120.63224 * 185.64221 * 4 2 1 10 10 H 1.08999 * 109.59222 * 246.30440 * 9 4 2 11 11 C 1.50696 * 109.58784 * 6.59131 * 9 4 2 12 12 O 1.20832 * 120.00144 * 49.53031 * 11 9 4 13 13 O 1.34231 * 120.00183 * 229.53424 * 11 9 4 14 14 C 1.45199 * 117.00118 * 179.97438 * 13 11 9 15 15 H 1.09002 * 109.47214 * 30.00678 * 14 13 11 16 16 C 1.52992 * 109.47797 * 270.00513 * 14 13 11 17 17 C 1.50706 * 109.47093 * 150.00093 * 14 13 11 18 18 O 1.21283 * 119.99324 * 5.00710 * 17 14 13 19 19 N 1.34771 * 120.00335 * 185.00557 * 17 14 13 20 20 C 1.46500 * 119.99835 * 0.02562 * 19 17 14 21 21 C 1.46503 * 120.00163 * 180.02562 * 19 17 14 22 22 C 1.50700 * 109.46940 * 269.99753 * 21 19 17 23 23 H 1.08001 * 119.99691 * 0.02562 * 22 21 19 24 24 C 1.37871 * 120.00130 * 179.97438 * 22 21 19 25 25 N 1.31521 * 119.99770 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00277 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.46799 * 0.02562 * 26 24 22 28 28 H 1.48495 * 109.47395 * 120.00268 * 26 24 22 29 29 H 1.48506 * 109.47339 * 240.00429 * 26 24 22 30 30 H 1.08992 * 109.47175 * 185.50518 * 1 2 3 31 31 H 1.09006 * 109.46948 * 305.50721 * 1 2 3 32 32 H 1.09000 * 109.47135 * 65.50275 * 1 2 3 33 33 H 1.09008 * 109.58435 * 353.41451 * 5 4 2 34 34 H 1.09003 * 109.58923 * 113.69375 * 5 4 2 35 35 H 1.09002 * 109.49612 * 65.31156 * 6 5 4 36 36 H 1.09000 * 109.50285 * 185.37437 * 6 5 4 37 37 H 1.09004 * 109.45848 * 181.38425 * 7 6 5 38 38 H 1.09001 * 109.46314 * 301.35582 * 7 6 5 39 39 H 1.08998 * 109.49910 * 178.68331 * 8 7 6 40 40 H 1.09002 * 109.49537 * 58.58844 * 8 7 6 41 41 H 1.08998 * 109.47126 * 60.00014 * 16 14 13 42 42 H 1.08998 * 109.47381 * 180.02562 * 16 14 13 43 43 H 1.08997 * 109.47014 * 299.99918 * 16 14 13 44 44 H 1.09001 * 109.47316 * 270.00072 * 20 19 17 45 45 H 1.09002 * 109.47213 * 150.00206 * 20 19 17 46 46 H 1.08995 * 109.47216 * 29.99809 * 20 19 17 47 47 H 1.09003 * 109.46873 * 29.99334 * 21 19 17 48 48 H 1.08992 * 109.47178 * 149.99839 * 21 19 17 49 49 H 0.96999 * 119.99794 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4655 -2.4446 -0.1229 6 6 1.8740 -3.3530 1.0410 7 6 3.3983 -3.4863 1.0681 8 6 4.0288 -2.1089 1.2860 9 6 3.6446 -1.1865 0.1248 10 1 4.0852 -1.5576 -0.8005 11 6 4.1467 0.2075 0.3998 12 8 3.6422 0.8696 1.2756 13 8 5.1545 0.7137 -0.3283 14 6 5.5859 2.0627 -0.0085 15 1 5.4174 2.2566 1.0508 16 6 4.7872 3.0653 -0.8438 17 6 7.0537 2.2074 -0.3182 18 8 7.6541 1.2968 -0.8485 19 7 7.6991 3.3486 -0.0060 20 6 6.9739 4.4483 0.6350 21 6 9.1258 3.4894 -0.3076 22 6 9.9375 3.0059 0.8664 23 1 9.4403 2.6308 1.7488 24 6 11.3147 3.0413 0.8137 25 7 11.9201 3.4976 -0.2610 26 14 12.3209 2.4412 2.2687 27 1 11.4080 1.9804 3.3454 28 1 13.1882 1.3147 1.8399 29 1 13.1664 3.5511 2.7773 30 1 -0.3633 -1.0228 0.0986 31 1 -0.3633 0.5969 0.8366 32 1 -0.3633 0.4261 -0.9352 33 1 0.3907 -2.2665 -0.0876 34 1 1.7262 -2.9196 -1.0688 35 1 1.5300 -2.9184 1.9796 36 1 1.4245 -4.3372 0.9095 37 1 3.6902 -4.1520 1.8804 38 1 3.7438 -3.8977 0.1196 39 1 5.1134 -2.2079 1.3286 40 1 3.6646 -1.6862 2.2224 41 1 3.7257 2.9607 -0.6197 42 1 5.1115 4.0779 -0.6040 43 1 4.9558 2.8715 -1.9030 44 1 6.5607 5.1058 -0.1299 45 1 7.6571 5.0133 1.2692 46 1 6.1642 4.0443 1.2427 47 1 9.3712 2.8958 -1.1882 48 1 9.3546 4.5374 -0.5005 49 1 12.8891 3.5229 -0.2980 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756231119.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:34 Heat of formation + Delta-G solvation = -151.913364 kcal Electronic energy + Delta-G solvation = -31431.146832 eV Core-core repulsion = 27165.764021 eV Total energy + Delta-G solvation = -4265.382811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.41200 -41.17941 -40.05591 -38.45208 -37.44281 -36.73995 -34.93491 -34.15857 -33.36138 -32.53013 -30.31410 -29.64122 -27.73804 -27.01175 -26.00948 -25.19580 -24.10599 -22.44409 -21.90147 -20.48318 -19.94727 -19.31453 -18.72838 -18.20842 -17.99735 -17.40282 -17.20032 -16.76309 -16.73087 -16.49122 -16.12447 -15.78500 -15.28494 -15.09037 -14.91788 -14.82824 -14.61355 -14.36466 -14.26911 -13.98648 -13.91130 -13.62420 -13.52714 -13.34724 -13.13654 -13.02827 -12.89326 -12.77167 -12.66201 -12.60723 -12.55847 -12.25437 -12.13462 -11.90867 -11.79627 -11.72453 -11.60169 -11.29647 -10.67778 -10.66121 -10.45776 -9.75632 -9.57039 -8.26335 -6.41192 1.05775 1.21104 1.34524 1.36909 1.48709 1.56319 1.64396 2.03757 2.27946 2.40410 3.03371 3.37732 3.38811 3.62909 3.72049 3.75219 3.82030 3.84854 3.94644 4.05813 4.13277 4.27110 4.30338 4.46042 4.47859 4.58771 4.62313 4.62878 4.69539 4.74613 4.81706 4.84609 4.91129 4.93348 5.02553 5.03183 5.13714 5.15805 5.20878 5.33314 5.41498 5.45127 5.48794 5.74775 6.00354 6.29742 6.50887 6.66852 6.74085 7.14824 7.17343 7.32024 8.81503 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016934 B = 0.002840 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.040797 B = 9856.997307 C =10934.576753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.486 3.514 3 O -0.566 6.566 4 N -0.606 5.606 5 C 0.098 3.902 6 C -0.134 4.134 7 C -0.113 4.113 8 C -0.122 4.122 9 C 0.157 3.843 10 H 0.112 0.888 11 C 0.462 3.538 12 O -0.501 6.501 13 O -0.350 6.350 14 C 0.089 3.911 15 H 0.104 0.896 16 C -0.153 4.153 17 C 0.502 3.498 18 O -0.577 6.577 19 N -0.599 5.599 20 C 0.070 3.930 21 C 0.260 3.740 22 C -0.547 4.547 23 H 0.050 0.950 24 C 0.010 3.990 25 N -0.926 5.926 26 Si 0.969 3.031 27 H -0.270 1.270 28 H -0.279 1.279 29 H -0.266 1.266 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.126 0.874 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.105 0.895 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.002 0.998 48 H 0.035 0.965 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.552 -13.199 1.771 31.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.277 3.723 3 O -0.445 6.445 4 N -0.343 5.343 5 C -0.021 4.021 6 C -0.172 4.172 7 C -0.151 4.151 8 C -0.161 4.161 9 C 0.052 3.948 10 H 0.129 0.871 11 C 0.305 3.695 12 O -0.388 6.388 13 O -0.267 6.267 14 C 0.031 3.969 15 H 0.121 0.879 16 C -0.211 4.211 17 C 0.289 3.711 18 O -0.456 6.456 19 N -0.331 5.331 20 C -0.072 4.072 21 C 0.139 3.861 22 C -0.586 4.586 23 H 0.069 0.931 24 C -0.190 4.190 25 N -0.565 5.565 26 Si 0.794 3.206 27 H -0.195 1.195 28 H -0.205 1.205 29 H -0.191 1.191 30 H 0.135 0.865 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.143 0.857 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.129 0.871 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.102 0.898 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.020 0.980 48 H 0.053 0.947 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -27.899 -12.812 1.681 30.746 hybrid contribution 1.266 0.232 0.596 1.418 sum -26.633 -12.580 2.277 29.543 Atomic orbital electron populations 1.22010 0.87509 1.06723 1.05832 1.21867 0.92822 0.82734 0.74903 1.90846 1.70304 1.33401 1.49937 1.48275 1.03980 1.08527 1.73550 1.22369 0.98552 0.81038 1.00171 1.21981 0.95349 1.01374 0.98482 1.21542 0.96003 0.93504 1.04016 1.21913 1.02008 0.96544 0.95592 1.20717 0.83238 0.88061 1.02790 0.87053 1.23673 0.76628 0.89695 0.79536 1.90606 1.54356 1.60689 1.33102 1.86539 1.49956 1.31605 1.58556 1.22320 0.90765 0.81443 1.02364 0.87865 1.22162 1.00519 0.98715 0.99655 1.20594 0.88627 0.82677 0.79244 1.90638 1.69449 1.40669 1.44878 1.48050 1.11245 1.15012 1.58779 1.22160 0.97207 0.89446 0.98365 1.18882 0.75312 0.96419 0.95486 1.21698 0.92110 1.43075 1.01709 0.93149 1.25852 0.98780 0.95040 0.99286 1.70051 1.10041 1.46938 1.29486 0.85343 0.78281 0.78334 0.78692 1.19453 1.20463 1.19081 0.86543 0.88819 0.87678 0.85665 0.89029 0.91818 0.87071 0.89630 0.89996 0.90550 0.91864 0.90329 0.87628 0.91981 0.89832 0.90272 0.90106 0.97977 0.94728 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 10.08 71.24 0.72 -1.04 16 2 C 0.49 10.95 7.41 87.66 0.65 11.60 16 3 O -0.57 -19.02 11.73 21.52 0.25 -18.77 16 4 N -0.61 -11.12 2.97 -799.20 -2.38 -13.49 16 5 C 0.10 0.69 6.35 86.36 0.55 1.24 16 6 C -0.13 -0.83 6.08 30.67 0.19 -0.64 16 7 C -0.11 -1.19 5.88 30.62 0.18 -1.01 16 8 C -0.12 -2.40 5.35 30.67 0.16 -2.23 16 9 C 0.16 3.81 3.35 44.23 0.15 3.96 16 10 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 11 C 0.46 16.21 5.06 71.23 0.36 16.57 16 12 O -0.50 -19.47 12.95 30.08 0.39 -19.08 16 13 O -0.35 -14.17 9.42 -45.09 -0.42 -14.60 16 14 C 0.09 3.53 2.16 29.85 0.06 3.59 16 15 H 0.10 3.99 6.14 -2.39 -0.01 3.97 16 16 C -0.15 -4.98 9.27 71.98 0.67 -4.31 16 17 C 0.50 24.14 7.10 87.66 0.62 24.76 16 18 O -0.58 -33.32 16.09 15.71 0.25 -33.07 16 19 N -0.60 -27.74 2.86 -851.13 -2.43 -30.17 16 20 C 0.07 2.34 8.92 127.77 1.14 3.48 16 21 C 0.26 14.60 5.16 85.63 0.44 15.04 16 22 C -0.55 -32.76 9.39 25.60 0.24 -32.52 16 23 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 24 C 0.01 0.57 5.46 84.65 0.46 1.03 16 25 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 26 Si 0.97 46.00 29.54 68.60 2.03 48.02 16 27 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 28 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 29 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 30 H 0.12 0.35 5.17 -2.39 -0.01 0.34 16 31 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.13 0.15 5.06 -2.38 -0.01 0.14 16 34 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 37 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.08 2.61 7.53 -2.39 -0.02 2.59 16 42 H 0.11 2.87 5.12 -2.39 -0.01 2.86 16 43 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.08 2.26 7.02 -2.39 -0.02 2.24 16 45 H 0.08 2.64 8.07 -2.39 -0.02 2.62 16 46 H 0.08 2.35 6.08 -2.39 -0.01 2.34 16 47 H 0.00 0.13 7.42 -2.39 -0.02 0.12 16 48 H 0.03 1.93 8.07 -2.39 -0.02 1.91 16 49 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -90.36 388.56 5.53 -84.83 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.96 Total: 13.33 kcal Atomic # 6 Polarization: 32.92 SS G_CDS: 6.59 Total: 39.52 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -4.52 Total: -100.18 kcal Atomic # 8 Polarization: -85.99 SS G_CDS: 0.47 Total: -85.52 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -90.36 5.53 -84.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756231119.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.083 kcal (2) G-P(sol) polarization free energy of solvation -90.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds