Wall clock time and date at job start Tue Mar 31 2020 23:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21280 * 120.00292 * 2 1 4 4 N 1.34781 * 119.99796 * 180.02562 * 2 1 3 5 5 C 1.46923 * 120.63015 * 5.81143 * 4 2 1 6 6 C 1.53199 * 108.77155 * 126.37314 * 5 4 2 7 7 C 1.53043 * 109.31155 * 54.63468 * 6 5 4 8 8 C 1.53041 * 109.53740 * 298.63186 * 7 6 5 9 9 C 1.46929 * 120.62749 * 185.79627 * 4 2 1 10 10 H 1.08998 * 109.58779 * 113.69672 * 9 4 2 11 11 C 1.50701 * 109.58749 * 353.41204 * 9 4 2 12 12 O 1.20820 * 120.00306 * 305.86453 * 11 9 4 13 13 O 1.34232 * 119.99913 * 125.86296 * 11 9 4 14 14 C 1.45194 * 116.99891 * 180.02562 * 13 11 9 15 15 H 1.09001 * 109.47804 * 29.99705 * 14 13 11 16 16 C 1.53004 * 109.47118 * 269.99834 * 14 13 11 17 17 C 1.50702 * 109.47143 * 150.00156 * 14 13 11 18 18 O 1.21281 * 120.00002 * 13.92142 * 17 14 13 19 19 N 1.34769 * 120.00184 * 193.92188 * 17 14 13 20 20 C 1.46503 * 119.99811 * 5.54731 * 19 17 14 21 21 C 1.46499 * 120.00394 * 185.54513 * 19 17 14 22 22 C 1.50700 * 109.46993 * 90.00379 * 21 19 17 23 23 H 1.07998 * 120.00336 * 359.97438 * 22 21 19 24 24 C 1.37876 * 120.00044 * 180.02562 * 22 21 19 25 25 N 1.31518 * 120.00382 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99655 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47250 * 90.00579 * 26 24 22 28 28 H 1.48509 * 109.46900 * 209.99809 * 26 24 22 29 29 H 1.48495 * 109.47642 * 329.99989 * 26 24 22 30 30 H 1.09005 * 109.47487 * 185.86390 * 1 2 3 31 31 H 1.08992 * 109.47410 * 305.86699 * 1 2 3 32 32 H 1.09006 * 109.46824 * 65.86803 * 1 2 3 33 33 H 1.08999 * 109.58757 * 246.15855 * 5 4 2 34 34 H 1.08995 * 109.59134 * 6.44958 * 5 4 2 35 35 H 1.08996 * 109.49521 * 174.58408 * 6 5 4 36 36 H 1.09000 * 109.49791 * 294.68300 * 6 5 4 37 37 H 1.09000 * 109.45869 * 58.65599 * 7 6 5 38 38 H 1.09004 * 109.45836 * 178.62378 * 7 6 5 39 39 H 1.08997 * 109.50124 * 301.41588 * 8 7 6 40 40 H 1.09001 * 109.49200 * 181.31341 * 8 7 6 41 41 H 1.09000 * 109.47088 * 295.17465 * 16 14 13 42 42 H 1.09007 * 109.47169 * 55.16520 * 16 14 13 43 43 H 1.08992 * 109.47495 * 175.16952 * 16 14 13 44 44 H 1.08998 * 109.47146 * 85.32304 * 20 19 17 45 45 H 1.09002 * 109.47213 * 205.31719 * 20 19 17 46 46 H 1.09000 * 109.47319 * 325.31896 * 20 19 17 47 47 H 1.08999 * 109.47489 * 210.00370 * 21 19 17 48 48 H 1.08997 * 109.47095 * 330.00327 * 21 19 17 49 49 H 0.96994 * 119.99999 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4658 -2.4443 -0.1291 6 6 2.0760 -3.2362 -1.2899 7 6 3.5835 -3.3794 -1.0679 8 6 4.2301 -1.9926 -1.0366 9 6 3.6444 -1.1867 0.1272 10 1 3.9226 -1.6516 1.0730 11 6 4.1743 0.2234 0.0822 12 8 3.8881 0.9472 -0.8419 13 8 4.9642 0.6753 1.0689 14 6 5.4373 2.0437 0.9601 15 1 4.7016 2.6408 0.4212 16 6 6.7659 2.0652 0.2017 17 6 5.6369 2.6173 2.3393 18 8 5.6515 1.8837 3.3050 19 7 5.7992 3.9456 2.4997 20 6 5.6608 4.8444 1.3512 21 6 6.1141 4.4907 3.8226 22 6 7.6095 4.5412 4.0021 23 1 8.2603 4.2009 3.2103 24 6 8.1469 5.0208 5.1778 25 7 9.4520 5.0645 5.3347 26 14 7.0212 5.6088 6.5477 27 1 6.7017 4.4719 7.4481 28 1 7.7012 6.6777 7.3226 29 1 5.7662 6.1442 5.9618 30 1 -0.3634 -1.0223 0.1050 31 1 -0.3634 0.6021 0.8327 32 1 -0.3633 0.4202 -0.9379 33 1 1.5664 -3.0141 0.7947 34 1 0.4112 -2.2543 -0.3283 35 1 1.6195 -4.2249 -1.3355 36 1 1.8947 -2.7078 -2.2259 37 1 3.7644 -3.8860 -0.1198 38 1 4.0163 -3.9635 -1.8800 39 1 4.0286 -1.4759 -1.9748 40 1 5.3068 -2.0964 -0.9017 41 1 7.5244 1.5404 0.7825 42 1 6.6417 1.5727 -0.7629 43 1 7.0782 3.0976 0.0449 44 1 4.6101 5.1000 1.2144 45 1 6.2355 5.7533 1.5297 46 1 6.0338 4.3488 0.4549 47 1 5.7037 5.4968 3.9081 48 1 5.6771 3.8535 4.5915 49 1 9.8299 5.4023 6.1616 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756231560.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:39 Heat of formation + Delta-G solvation = -146.984462 kcal Electronic energy + Delta-G solvation = -31476.291522 eV Core-core repulsion = 27211.122445 eV Total energy + Delta-G solvation = -4265.169078 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.41063 -41.21301 -40.09717 -38.46742 -37.45220 -36.77355 -34.84964 -34.17862 -33.44387 -32.58598 -30.35194 -30.29573 -27.72472 -27.03509 -25.91626 -25.12672 -23.93425 -22.37365 -21.93132 -20.45030 -19.94555 -19.26001 -19.15640 -18.36522 -17.99122 -17.44374 -17.36801 -16.74068 -16.58558 -16.42107 -16.11368 -15.89560 -15.33133 -15.05003 -14.91229 -14.87718 -14.71902 -14.39632 -14.27175 -14.19835 -13.87651 -13.78364 -13.60256 -13.45039 -13.25896 -13.11693 -12.97086 -12.85672 -12.60770 -12.56968 -12.46970 -12.14411 -12.07227 -11.98040 -11.77907 -11.76880 -11.58455 -11.29533 -10.85640 -10.74954 -10.33662 -9.79977 -9.56166 -8.36364 -6.42175 0.95997 1.26580 1.32360 1.35601 1.44157 1.48845 1.64200 1.99995 2.28193 2.29681 2.97280 3.32929 3.40040 3.62075 3.74210 3.76906 3.82074 3.82289 3.95807 4.06016 4.14397 4.17538 4.32182 4.46915 4.48473 4.49037 4.54329 4.57391 4.69541 4.70810 4.75860 4.76854 4.83422 4.86007 4.93663 5.00697 5.03973 5.13224 5.19315 5.32262 5.39541 5.41893 5.44380 5.51015 6.19015 6.25077 6.42593 6.58683 6.74896 7.08100 7.14389 7.24238 8.80249 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019677 B = 0.002727 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.608466 B =10266.175581 C =10565.236554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.483 3.517 3 O -0.573 6.573 4 N -0.606 5.606 5 C 0.098 3.902 6 C -0.134 4.134 7 C -0.114 4.114 8 C -0.119 4.119 9 C 0.154 3.846 10 H 0.112 0.888 11 C 0.457 3.543 12 O -0.490 6.490 13 O -0.351 6.351 14 C 0.088 3.912 15 H 0.109 0.891 16 C -0.155 4.155 17 C 0.506 3.494 18 O -0.575 6.575 19 N -0.598 5.598 20 C 0.066 3.934 21 C 0.223 3.777 22 C -0.539 4.539 23 H 0.034 0.966 24 C 0.015 3.985 25 N -0.941 5.941 26 Si 0.946 3.054 27 H -0.276 1.276 28 H -0.271 1.271 29 H -0.240 1.240 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.057 0.943 48 H 0.020 0.980 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.889 -18.531 -17.304 32.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.274 3.726 3 O -0.452 6.452 4 N -0.343 5.343 5 C -0.022 4.022 6 C -0.172 4.172 7 C -0.151 4.151 8 C -0.157 4.157 9 C 0.049 3.951 10 H 0.130 0.870 11 C 0.299 3.701 12 O -0.375 6.375 13 O -0.268 6.268 14 C 0.029 3.971 15 H 0.126 0.874 16 C -0.212 4.212 17 C 0.293 3.707 18 O -0.455 6.455 19 N -0.330 5.330 20 C -0.075 4.075 21 C 0.101 3.899 22 C -0.578 4.578 23 H 0.052 0.948 24 C -0.184 4.184 25 N -0.581 5.581 26 Si 0.768 3.232 27 H -0.202 1.202 28 H -0.196 1.196 29 H -0.163 1.163 30 H 0.137 0.863 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.116 0.884 44 H 0.093 0.907 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.075 0.925 48 H 0.038 0.962 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.519 -18.025 -16.972 32.156 hybrid contribution 0.475 0.799 0.846 1.257 sum -20.044 -17.226 -16.126 30.960 Atomic orbital electron populations 1.22022 0.87619 1.06840 1.05765 1.21948 0.92898 0.82981 0.74770 1.90950 1.70225 1.33716 1.50356 1.48270 1.04192 1.08439 1.73361 1.22357 0.97721 0.81548 1.00582 1.21976 0.95473 1.01883 0.97834 1.21550 0.95703 0.93703 1.04177 1.21917 1.01233 0.97145 0.95385 1.20845 0.82575 0.88284 1.03388 0.87048 1.23685 0.75254 0.90868 0.80270 1.90607 1.53421 1.57627 1.35874 1.86556 1.61650 1.30064 1.48513 1.22332 0.99256 0.81856 0.93629 0.87365 1.22146 0.93683 1.05071 1.00334 1.20598 0.76846 0.82774 0.90511 1.90620 1.52164 1.59678 1.43015 1.47812 1.68034 1.05575 1.11539 1.22186 1.02800 0.94986 0.87549 1.19459 0.94662 0.94604 0.81148 1.21504 0.91372 1.42788 1.02120 0.94756 1.25801 0.96615 0.95175 1.00767 1.70032 1.12591 1.47726 1.27767 0.85745 0.79883 0.78583 0.78949 1.20171 1.19634 1.16330 0.86335 0.88796 0.87903 0.89038 0.86039 0.87130 0.91971 0.89977 0.89289 0.91783 0.89485 0.92138 0.89231 0.88388 0.90706 0.89559 0.89740 0.92526 0.96241 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 10.00 71.24 0.71 -1.37 16 2 C 0.48 11.75 7.62 87.66 0.67 12.42 16 3 O -0.57 -20.93 12.05 21.64 0.26 -20.67 16 4 N -0.61 -11.37 2.97 -799.17 -2.38 -13.75 16 5 C 0.10 0.70 6.25 86.37 0.54 1.24 16 6 C -0.13 -0.72 6.08 30.68 0.19 -0.53 16 7 C -0.11 -0.92 5.88 30.62 0.18 -0.73 16 8 C -0.12 -1.91 5.34 30.67 0.16 -1.75 16 9 C 0.15 3.52 3.34 44.23 0.15 3.67 16 10 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 11 C 0.46 15.39 5.07 71.24 0.36 15.76 16 12 O -0.49 -18.43 12.88 30.16 0.39 -18.04 16 13 O -0.35 -13.81 9.45 -45.19 -0.43 -14.24 16 14 C 0.09 3.42 2.14 29.85 0.06 3.48 16 15 H 0.11 4.12 6.42 -2.39 -0.02 4.10 16 16 C -0.16 -5.07 9.29 71.98 0.67 -4.40 16 17 C 0.51 24.10 6.97 87.66 0.61 24.71 16 18 O -0.58 -32.55 16.11 15.36 0.25 -32.30 16 19 N -0.60 -27.09 2.86 -851.14 -2.43 -29.52 16 20 C 0.07 2.21 9.88 127.77 1.26 3.48 16 21 C 0.22 11.51 4.25 85.63 0.36 11.87 16 22 C -0.54 -32.54 9.94 25.60 0.25 -32.29 16 23 H 0.03 2.29 8.06 -2.91 -0.02 2.26 16 24 C 0.01 0.90 5.47 84.65 0.46 1.36 16 25 N -0.94 -60.06 13.96 21.45 0.30 -59.76 16 26 Si 0.95 45.38 27.47 68.60 1.88 47.26 16 27 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 28 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 29 H -0.24 -10.45 6.54 99.48 0.65 -9.80 16 30 H 0.12 0.52 5.33 -2.38 -0.01 0.51 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.12 0.25 5.26 -2.39 -0.01 0.23 16 35 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 39 H 0.06 1.24 8.07 -2.39 -0.02 1.22 16 40 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 43 H 0.10 2.91 5.96 -2.39 -0.01 2.90 16 44 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.09 2.80 8.04 -2.39 -0.02 2.78 16 46 H 0.08 2.45 4.61 -2.39 -0.01 2.43 16 47 H 0.06 2.65 7.13 -2.39 -0.02 2.64 16 48 H 0.02 1.08 6.78 -2.39 -0.02 1.07 16 49 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -93.62 387.70 5.39 -88.23 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.90 Total: 15.88 kcal Atomic # 6 Polarization: 30.26 SS G_CDS: 6.65 Total: 36.91 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -4.51 Total: -103.03 kcal Atomic # 8 Polarization: -85.72 SS G_CDS: 0.47 Total: -85.25 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.88 Total: 47.26 kcal Total: -93.62 5.39 -88.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756231560.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.756 kcal (2) G-P(sol) polarization free energy of solvation -93.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds