Wall clock time and date at job start Wed Apr 1 2020 00:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47351 * 2 1 4 4 C 1.46500 * 120.00389 * 89.99431 * 3 2 1 5 5 C 1.50695 * 109.47109 * 270.00215 * 4 3 2 6 6 H 1.07995 * 120.00496 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99572 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00327 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99951 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 59.99744 * 9 7 5 11 11 H 1.48503 * 109.47261 * 299.99924 * 9 7 5 12 12 H 1.48500 * 109.47454 * 179.97438 * 9 7 5 13 13 C 1.34780 * 119.99868 * 269.99720 * 3 2 1 14 14 O 1.21278 * 120.00148 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99973 * 0.02562 * 13 3 2 16 16 O 1.45198 * 109.47470 * 179.97438 * 15 13 3 17 17 C 1.34228 * 117.00458 * 179.97438 * 16 15 13 18 18 O 1.20831 * 119.99460 * 0.02562 * 17 16 15 19 19 C 1.50693 * 120.00326 * 180.02562 * 17 16 15 20 20 H 1.09001 * 109.47189 * 59.99678 * 19 17 16 21 21 C 1.53003 * 109.47094 * 300.00023 * 19 17 16 22 22 C 1.53001 * 109.47301 * 180.02562 * 21 19 17 23 23 C 1.52996 * 109.47368 * 59.99650 * 22 21 19 24 24 C 1.53003 * 109.47196 * 300.00414 * 23 22 21 25 25 H 1.09001 * 109.46821 * 299.99924 * 24 23 22 26 26 C 1.50698 * 109.47124 * 180.02562 * 24 23 22 27 27 N 1.34777 * 120.00007 * 59.99198 * 26 24 23 28 28 O 1.21277 * 119.99946 * 240.00109 * 26 24 23 29 29 C 1.52994 * 109.47128 * 59.99757 * 24 23 22 30 30 H 1.09003 * 109.46767 * 60.00346 * 1 2 3 31 31 H 1.08996 * 109.47304 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47229 * 300.00213 * 1 2 3 33 33 H 1.09000 * 109.47566 * 239.99371 * 2 1 3 34 34 H 1.09003 * 109.46767 * 119.99654 * 2 1 3 35 35 H 1.09002 * 109.47129 * 150.00048 * 4 3 2 36 36 H 1.08998 * 109.46845 * 30.00855 * 4 3 2 37 37 H 0.97006 * 119.99995 * 359.97438 * 8 7 5 38 38 H 1.09000 * 109.47280 * 300.00229 * 15 13 3 39 39 H 1.09004 * 109.46922 * 59.99684 * 15 13 3 40 40 H 1.09003 * 109.47185 * 300.00262 * 21 19 17 41 41 H 1.09001 * 109.46884 * 59.99875 * 21 19 17 42 42 H 1.08997 * 109.47271 * 180.02562 * 22 21 19 43 43 H 1.09005 * 109.46401 * 299.99663 * 22 21 19 44 44 H 1.09003 * 109.46681 * 60.00266 * 23 22 21 45 45 H 1.08998 * 109.47097 * 180.02562 * 23 22 21 46 46 H 0.97000 * 119.99897 * 0.02562 * 27 26 24 47 47 H 0.97003 * 119.99870 * 179.97438 * 27 26 24 48 48 H 1.09004 * 109.47368 * 180.02562 * 29 24 23 49 49 H 1.09003 * 109.47262 * 59.99834 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 1.0066 2.7823 1.7036 6 1 0.1159 2.7255 1.0956 7 6 0.9949 3.5050 2.8777 8 7 2.0797 3.5747 3.6179 9 14 -0.5619 4.3851 3.4173 10 1 -1.6543 3.3948 3.5945 11 1 -0.9546 5.3753 2.3827 12 1 -0.3148 5.0843 4.7038 13 6 2.2431 2.0165 -1.1672 14 8 2.6469 3.1600 -1.1673 15 6 1.9914 1.3062 -2.4723 16 8 2.3055 2.1958 -3.5760 17 6 2.1345 1.7121 -4.8164 18 8 1.7350 0.5828 -4.9746 19 6 2.4406 2.5774 -6.0115 20 1 3.4893 2.8736 -5.9866 21 6 1.5571 3.8262 -5.9767 22 6 1.8675 4.7045 -7.1905 23 6 1.5893 3.9185 -8.4733 24 6 2.4727 2.6698 -8.5081 25 1 3.5215 2.9659 -8.4836 26 6 2.1992 1.8959 -9.7720 27 7 2.4032 2.4728 -10.9728 28 8 1.7953 0.7541 -9.7085 29 6 2.1624 1.7915 -7.2944 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 3.0644 2.7985 1.1383 36 1 2.5506 1.3453 2.0283 37 1 2.8881 3.1174 3.3379 38 1 2.6211 0.4184 -2.5302 39 1 0.9432 1.0125 -2.5298 40 1 0.5084 3.5301 -6.0016 41 1 1.7551 4.3859 -5.0626 42 1 1.2384 5.5942 -7.1655 43 1 2.9162 5.0006 -7.1659 44 1 0.5405 3.6224 -8.4977 45 1 1.8108 4.5441 -9.3380 46 1 2.7264 3.3860 -11.0236 47 1 2.2274 1.9746 -11.7864 48 1 2.7921 0.9021 -7.3189 49 1 1.1136 1.4954 -7.3188 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787838107.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:42 Heat of formation + Delta-G solvation = -213.342754 kcal Electronic energy + Delta-G solvation = -30086.558305 eV Core-core repulsion = 25818.511716 eV Total energy + Delta-G solvation = -4268.046589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.09155 -41.07277 -40.58388 -38.55122 -37.61262 -37.11023 -35.18080 -34.75033 -32.49727 -31.88999 -31.63261 -30.58152 -28.14717 -25.45269 -25.01145 -24.58485 -24.22797 -22.27024 -21.42357 -20.69538 -20.49640 -19.21001 -19.06211 -18.34117 -18.10274 -17.82749 -17.54332 -17.31310 -16.59949 -16.31289 -16.12759 -15.70528 -15.65176 -15.16138 -15.04350 -14.83724 -14.75629 -14.59133 -14.23383 -13.94532 -13.82950 -13.75543 -13.50344 -13.41325 -13.32551 -13.28844 -12.57765 -12.48584 -12.47511 -12.27028 -12.12932 -11.95959 -11.90201 -11.82529 -11.73495 -11.48193 -11.21824 -11.19469 -10.85591 -10.79799 -10.61563 -10.60114 -9.60647 -8.67675 -6.42317 1.01165 1.17742 1.48181 1.52334 1.58256 1.64993 1.77574 2.25430 2.53958 2.62559 3.10598 3.31194 3.39587 3.62058 3.66365 3.75863 3.87144 3.89863 4.05125 4.06363 4.16514 4.24552 4.32738 4.34803 4.39813 4.46937 4.49204 4.63314 4.67821 4.84395 4.86063 4.94071 4.94173 5.03965 5.09454 5.14105 5.17779 5.26058 5.30932 5.37938 5.45152 5.50111 5.81870 5.93002 6.14249 6.43492 6.47592 6.49825 6.57506 7.12956 7.36264 7.38679 8.67871 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019693 B = 0.002198 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.482093 B =12738.140491 C =13440.551641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.099 3.901 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.609 4.609 6 H 0.048 0.952 7 C -0.032 4.032 8 N -0.932 5.932 9 Si 1.116 2.884 10 H -0.263 1.263 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.502 3.498 14 O -0.574 6.574 15 C 0.061 3.939 16 O -0.344 6.344 17 C 0.462 3.538 18 O -0.530 6.530 19 C -0.069 4.069 20 H 0.137 0.863 21 C -0.118 4.118 22 C -0.108 4.108 23 C -0.108 4.108 24 C -0.100 4.100 25 H 0.134 0.866 26 C 0.518 3.482 27 N -0.834 5.834 28 O -0.597 6.597 29 C -0.079 4.079 30 H 0.048 0.952 31 H 0.095 0.905 32 H 0.044 0.956 33 H 0.103 0.897 34 H 0.086 0.914 35 H -0.004 1.004 36 H 0.025 0.975 37 H 0.256 0.744 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.058 0.942 45 H 0.105 0.895 46 H 0.420 0.580 47 H 0.406 0.594 48 H 0.061 0.939 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.738 -1.081 -29.042 29.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.126 3.874 5 C -0.647 4.647 6 H 0.067 0.933 7 C -0.230 4.230 8 N -0.569 5.569 9 Si 0.937 3.063 10 H -0.188 1.188 11 H -0.206 1.206 12 H -0.205 1.205 13 C 0.289 3.711 14 O -0.454 6.454 15 C -0.016 4.016 16 O -0.260 6.260 17 C 0.306 3.694 18 O -0.419 6.419 19 C -0.088 4.088 20 H 0.155 0.845 21 C -0.155 4.155 22 C -0.146 4.146 23 C -0.145 4.145 24 C -0.121 4.121 25 H 0.152 0.848 26 C 0.304 3.696 27 N -0.398 5.398 28 O -0.478 6.478 29 C -0.117 4.117 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.064 0.936 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.014 0.986 36 H 0.043 0.957 37 H 0.065 0.935 38 H 0.139 0.861 39 H 0.129 0.871 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.076 0.924 45 H 0.123 0.877 46 H 0.252 0.748 47 H 0.237 0.763 48 H 0.080 0.920 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.047 -0.595 -27.635 27.641 hybrid contribution 0.791 -1.207 -0.907 1.705 sum 0.745 -1.803 -28.542 28.609 Atomic orbital electron populations 1.22174 0.95226 1.03182 1.01775 1.21867 0.95546 0.80553 1.04349 1.48049 1.63854 1.15158 1.05399 1.18966 0.96051 0.91730 0.80620 1.22485 0.98168 1.34705 1.09376 0.93346 1.27283 1.05490 0.96508 0.93767 1.70925 1.02405 1.43162 1.40406 0.82949 0.71330 0.75971 0.76045 1.18787 1.20592 1.20546 1.20515 0.78329 0.86523 0.85747 1.90672 1.47454 1.19538 1.87715 1.22780 1.04362 0.92288 0.82192 1.86577 1.78843 1.45443 1.15138 1.24600 0.73249 0.87056 0.84485 1.90663 1.43275 1.21256 1.86715 1.21222 1.04958 0.95011 0.87619 0.84548 1.21625 0.98614 0.94112 1.01173 1.21517 1.04004 0.97586 0.91447 1.21611 0.98929 0.94120 0.99887 1.21335 1.04554 0.95948 0.90255 0.84835 1.20916 0.75605 0.86207 0.86914 1.43723 1.69170 1.19664 1.07273 1.90767 1.47872 1.20935 1.88222 1.21125 1.02491 0.97197 0.90932 0.93332 0.88661 0.93649 0.87931 0.89544 0.98590 0.95732 0.93508 0.86075 0.87076 0.92211 0.91056 0.89596 0.89149 0.92359 0.87666 0.74849 0.76289 0.91997 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.87 10.24 71.98 0.74 -4.13 16 2 C 0.10 3.01 5.97 86.38 0.52 3.53 16 3 N -0.59 -25.14 2.46 -826.17 -2.03 -27.16 16 4 C 0.25 13.11 4.51 85.63 0.39 13.49 16 5 C -0.61 -34.88 8.92 25.60 0.23 -34.65 16 6 H 0.05 2.77 7.42 -2.91 -0.02 2.75 16 7 C -0.03 -1.87 5.46 84.66 0.46 -1.41 16 8 N -0.93 -57.61 13.65 21.45 0.29 -57.32 16 9 Si 1.12 51.14 29.90 68.60 2.05 53.19 16 10 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 13 C 0.50 21.57 7.75 87.66 0.68 22.24 16 14 O -0.57 -30.54 16.08 15.77 0.25 -30.29 16 15 C 0.06 1.95 4.50 71.24 0.32 2.27 16 16 O -0.34 -11.28 9.66 -45.04 -0.43 -11.71 16 17 C 0.46 12.86 7.25 71.23 0.52 13.38 16 18 O -0.53 -17.02 15.73 21.95 0.35 -16.68 16 19 C -0.07 -1.31 2.63 -11.54 -0.03 -1.34 16 20 H 0.14 1.92 8.14 -2.39 -0.02 1.90 16 21 C -0.12 -1.96 5.14 30.60 0.16 -1.80 16 22 C -0.11 -0.93 5.92 30.59 0.18 -0.75 16 23 C -0.11 -0.76 5.10 30.59 0.16 -0.61 16 24 C -0.10 -1.08 2.52 -11.54 -0.03 -1.11 16 25 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 26 C 0.52 7.78 7.43 87.66 0.65 8.43 16 27 N -0.83 -4.66 8.77 -173.54 -1.52 -6.18 16 28 O -0.60 -16.06 16.82 -3.02 -0.05 -16.11 16 29 C -0.08 -1.52 3.06 30.59 0.09 -1.43 16 30 H 0.05 1.41 7.22 -2.39 -0.02 1.40 16 31 H 0.09 2.08 8.14 -2.39 -0.02 2.07 16 32 H 0.04 1.64 7.26 -2.39 -0.02 1.62 16 33 H 0.10 2.36 6.44 -2.39 -0.02 2.35 16 34 H 0.09 2.53 7.89 -2.39 -0.02 2.51 16 35 H 0.00 -0.24 7.29 -2.39 -0.02 -0.25 16 36 H 0.02 1.29 7.76 -2.39 -0.02 1.27 16 37 H 0.26 15.93 7.22 -92.70 -0.67 15.26 16 38 H 0.12 3.22 7.39 -2.39 -0.02 3.20 16 39 H 0.11 3.26 7.18 -2.39 -0.02 3.24 16 40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 1.43 8.11 -2.39 -0.02 1.41 16 42 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 44 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.10 0.06 7.56 -2.39 -0.02 0.05 16 46 H 0.42 -0.75 8.25 -92.71 -0.76 -1.52 16 47 H 0.41 1.98 8.93 -92.71 -0.83 1.16 16 48 H 0.06 1.41 8.06 -2.39 -0.02 1.39 16 49 H 0.05 1.35 8.06 -2.39 -0.02 1.33 16 Total: -1.00 -88.96 399.84 3.42 -85.54 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -0.51 Total: 10.60 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 5.03 Total: 16.12 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -3.26 Total: -90.67 kcal Atomic # 8 Polarization: -74.90 SS G_CDS: 0.11 Total: -74.78 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 2.05 Total: 53.19 kcal Total: -88.96 3.42 -85.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787838107.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.804 kcal (2) G-P(sol) polarization free energy of solvation -88.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds