Wall clock time and date at job start Wed Apr 1 2020 00:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.46493 * 119.99811 * 270.00105 * 3 2 1 5 5 C 1.50698 * 109.47208 * 89.99882 * 4 3 2 6 6 H 1.08002 * 120.00208 * 359.97438 * 5 4 3 7 7 C 1.37886 * 119.99967 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99927 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99800 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47282 * 89.99788 * 9 7 5 11 11 H 1.48507 * 109.46845 * 209.99944 * 9 7 5 12 12 H 1.48501 * 109.47292 * 329.99263 * 9 7 5 13 13 C 1.34778 * 120.00058 * 89.99676 * 3 2 1 14 14 O 1.21273 * 120.00182 * 179.97438 * 13 3 2 15 15 C 1.50702 * 120.00009 * 0.02562 * 13 3 2 16 16 O 1.45198 * 109.47104 * 179.97438 * 15 13 3 17 17 C 1.34229 * 116.99879 * 180.02562 * 16 15 13 18 18 O 1.20830 * 119.99969 * 0.02562 * 17 16 15 19 19 C 1.50705 * 120.00208 * 180.02562 * 17 16 15 20 20 H 1.08999 * 109.46927 * 300.00436 * 19 17 16 21 21 C 1.53003 * 109.46688 * 59.99904 * 19 17 16 22 22 C 1.53000 * 109.46751 * 180.02562 * 21 19 17 23 23 C 1.52999 * 109.46896 * 299.99888 * 22 21 19 24 24 C 1.53003 * 109.47329 * 60.00466 * 23 22 21 25 25 H 1.09000 * 109.47375 * 179.97438 * 24 23 22 26 26 C 1.50694 * 109.47043 * 59.99764 * 24 23 22 27 27 N 1.34778 * 120.00058 * 60.00460 * 26 24 23 28 28 O 1.21289 * 119.99866 * 239.99975 * 26 24 23 29 29 C 1.52999 * 109.47315 * 180.02562 * 19 17 16 30 30 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00146 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00128 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99674 * 2 1 3 34 34 H 1.08996 * 109.47853 * 240.00016 * 2 1 3 35 35 H 1.09007 * 109.47237 * 209.99803 * 4 3 2 36 36 H 1.08995 * 109.47637 * 329.99646 * 4 3 2 37 37 H 0.96999 * 119.99623 * 179.97438 * 8 7 5 38 38 H 1.09000 * 109.47328 * 300.00634 * 15 13 3 39 39 H 1.09009 * 109.47181 * 59.99924 * 15 13 3 40 40 H 1.09000 * 109.47375 * 300.00336 * 21 19 17 41 41 H 1.08999 * 109.47002 * 60.00578 * 21 19 17 42 42 H 1.08997 * 109.47369 * 59.99499 * 22 21 19 43 43 H 1.09001 * 109.46851 * 180.02562 * 22 21 19 44 44 H 1.09004 * 109.47487 * 180.02562 * 23 22 21 45 45 H 1.08999 * 109.47471 * 300.00272 * 23 22 21 46 46 H 0.96997 * 119.99574 * 359.97438 * 27 26 24 47 47 H 0.97004 * 119.99872 * 180.02562 * 27 26 24 48 48 H 1.09003 * 109.46996 * 300.00191 * 29 19 17 49 49 H 1.09007 * 109.46938 * 60.00127 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 1.0067 2.7822 -1.7037 6 1 0.1156 2.7247 -1.0962 7 6 0.9950 3.5048 -2.8780 8 7 2.0799 3.5744 -3.6182 9 14 -0.5615 4.3859 -3.4169 10 1 -0.5689 5.7626 -2.8603 11 1 -0.6051 4.4513 -4.8999 12 1 -1.7478 3.6443 -2.9191 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9923 1.3061 2.4723 16 8 2.3072 2.1955 3.5759 17 6 2.1371 1.7115 4.8163 18 8 1.7387 0.5818 4.9746 19 6 2.4431 2.5770 6.0115 20 1 3.4915 2.8740 5.9861 21 6 1.5585 3.8249 5.9772 22 6 1.8696 4.7039 7.1902 23 6 1.5934 3.9181 8.4736 24 6 2.4779 2.6702 8.5080 25 1 2.2815 2.1106 9.4225 26 6 3.9274 3.0808 8.4724 27 7 4.4303 3.8632 9.4479 28 8 4.6415 2.7071 7.5661 29 6 2.1671 1.7907 7.2947 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.0645 2.7985 -1.1384 36 1 2.5506 1.3452 -2.0283 37 1 2.0714 4.0824 -4.4445 38 1 0.9444 1.0114 2.5302 39 1 2.6228 0.4187 2.5299 40 1 1.7555 4.3849 5.0630 41 1 0.5101 3.5279 6.0025 42 1 2.9180 5.0008 7.1646 43 1 1.2391 5.5928 7.1660 44 1 1.8145 4.5444 9.3379 45 1 0.5449 3.6211 8.4994 46 1 3.8591 4.1622 10.1725 47 1 5.3633 4.1277 9.4248 48 1 1.1187 1.4933 7.3202 49 1 2.7976 0.9018 7.3188 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787838110.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:45 Heat of formation + Delta-G solvation = -177.689384 kcal Electronic energy + Delta-G solvation = -30518.799435 eV Core-core repulsion = 26252.298892 eV Total energy + Delta-G solvation = -4266.500543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.16853 -40.12701 -38.89558 -37.31517 -36.19913 -35.24499 -34.22773 -32.76659 -31.62560 -31.19461 -30.03763 -29.02194 -26.62240 -24.45677 -24.04573 -22.77979 -22.60113 -21.93074 -20.58155 -19.73090 -18.63725 -17.86417 -17.34319 -16.91616 -16.73778 -16.55617 -16.31715 -15.97516 -15.50448 -15.06693 -14.99252 -14.53309 -14.34890 -14.19606 -13.98635 -13.51937 -13.23879 -12.96747 -12.86212 -12.75558 -12.50715 -12.39444 -12.28442 -12.11815 -11.97368 -11.50519 -11.45153 -11.24925 -11.19950 -10.98381 -10.95407 -10.74247 -10.57983 -10.51094 -10.42281 -10.23096 -10.08953 -10.05185 -9.84483 -9.58518 -8.93314 -8.41878 -7.71589 -6.03204 -4.07260 2.25524 2.33383 2.59299 3.14059 3.30548 3.32240 3.38412 3.41338 3.91212 4.25207 4.30806 4.33070 4.45623 4.63954 4.78365 4.83145 4.91837 4.96425 5.00934 5.12576 5.18991 5.23178 5.31133 5.32146 5.43615 5.46493 5.54770 5.61403 5.68630 5.74861 5.81562 5.82716 5.89460 6.05629 6.10417 6.12583 6.30719 6.41301 6.52623 6.76401 6.93053 7.03624 7.42915 7.52162 7.84050 7.91778 7.93478 8.23811 8.34036 8.88787 9.03692 9.57167 11.05125 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017651 B = 0.002393 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.887884 B =11698.374678 C =12212.788934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.594 5.594 4 C 0.247 3.753 5 C -0.523 4.523 6 H 0.059 0.941 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.048 3.952 16 O -0.327 6.327 17 C 0.468 3.532 18 O -0.517 6.517 19 C -0.090 4.090 20 H 0.135 0.865 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.113 4.113 24 C -0.109 4.109 25 H 0.104 0.896 26 C 0.521 3.479 27 N -0.857 5.857 28 O -0.534 6.534 29 C -0.083 4.083 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.035 0.965 37 H 0.263 0.737 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.400 0.600 47 H 0.401 0.599 48 H 0.080 0.920 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.773 -2.859 28.124 28.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.017 4.017 3 N -0.328 5.328 4 C 0.128 3.872 5 C -0.562 4.562 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.394 6.394 15 C -0.029 4.029 16 O -0.242 6.242 17 C 0.311 3.689 18 O -0.405 6.405 19 C -0.108 4.108 20 H 0.152 0.848 21 C -0.153 4.153 22 C -0.159 4.159 23 C -0.151 4.151 24 C -0.130 4.130 25 H 0.122 0.878 26 C 0.306 3.694 27 N -0.420 5.420 28 O -0.410 6.410 29 C -0.121 4.121 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.229 0.771 47 H 0.232 0.768 48 H 0.099 0.901 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.287 -2.847 27.261 27.411 hybrid contribution -0.841 0.489 -0.075 0.975 sum -1.128 -2.358 27.187 27.312 Atomic orbital electron populations 1.22242 0.96121 1.01143 1.03424 1.21477 0.94789 0.83491 1.01989 1.48218 1.64014 1.13365 1.07166 1.19347 0.97698 0.92582 0.77529 1.21435 0.97462 1.31137 1.06199 0.92260 1.24940 0.96497 0.96267 0.96447 1.69933 1.27483 1.41609 1.14364 0.86510 0.83202 0.80250 0.77524 1.20562 1.21184 1.19945 1.19715 0.79763 0.87019 0.84299 1.90710 1.44886 1.17059 1.86752 1.22948 1.02715 0.92599 0.84637 1.86575 1.78402 1.44826 1.14384 1.23820 0.73589 0.86842 0.84608 1.90624 1.42908 1.20242 1.86773 1.21350 1.05263 0.94978 0.89237 0.84773 1.21568 0.99186 0.94723 0.99779 1.21577 1.02279 0.98328 0.93667 1.21609 1.00097 0.94884 0.98488 1.21422 0.91796 0.98594 1.01224 0.87781 1.20681 0.90127 0.77346 0.81249 1.43911 1.15612 1.54363 1.28133 1.90722 1.61093 1.54680 1.34497 1.21228 1.02981 0.97453 0.90422 0.92557 0.90334 0.93369 0.92040 0.90184 0.93730 0.94692 0.92726 0.88759 0.88952 0.89703 0.91274 0.91625 0.90716 0.91275 0.90180 0.77147 0.76817 0.90120 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 10.24 37.16 0.38 -2.30 16 2 C 0.11 1.75 5.98 -4.04 -0.02 1.73 16 3 N -0.59 -12.83 2.46 -175.07 -0.43 -13.26 16 4 C 0.25 6.49 5.20 -5.20 -0.03 6.46 16 5 C -0.52 -14.76 8.92 -34.44 -0.31 -15.06 16 6 H 0.06 1.66 7.42 -52.49 -0.39 1.27 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 9 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.51 11.20 7.75 -10.98 -0.09 11.11 16 14 O -0.52 -13.80 16.08 -14.10 -0.23 -14.02 16 15 C 0.05 0.85 4.50 36.01 0.16 1.01 16 16 O -0.33 -5.93 9.66 -45.90 -0.44 -6.37 16 17 C 0.47 7.33 7.26 36.01 0.26 7.59 16 18 O -0.52 -8.65 15.73 -18.75 -0.30 -8.94 16 19 C -0.09 -1.10 2.33 -91.77 -0.21 -1.32 16 20 H 0.13 1.87 5.51 -51.93 -0.29 1.58 16 21 C -0.11 -1.20 5.14 -26.73 -0.14 -1.34 16 22 C -0.12 -0.91 5.70 -26.73 -0.15 -1.06 16 23 C -0.11 -0.57 5.36 -26.73 -0.14 -0.71 16 24 C -0.11 -0.71 3.01 -91.75 -0.28 -0.98 16 25 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 26 C 0.52 4.31 5.91 -10.99 -0.06 4.24 16 27 N -0.86 -3.74 8.77 31.22 0.27 -3.47 16 28 O -0.53 -6.95 14.49 5.55 0.08 -6.87 16 29 C -0.08 -0.81 3.67 -26.71 -0.10 -0.91 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.45 7.26 -51.93 -0.38 1.07 16 32 H 0.05 0.75 7.22 -51.93 -0.38 0.37 16 33 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 34 H 0.08 1.26 7.89 -51.93 -0.41 0.85 16 35 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16 36 H 0.04 0.92 7.89 -51.93 -0.41 0.51 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.09 1.51 7.18 -51.93 -0.37 1.13 16 39 H 0.09 1.43 7.39 -51.92 -0.38 1.05 16 40 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.55 7.22 -51.93 -0.37 0.18 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.19 7.57 -51.93 -0.39 -0.20 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.40 0.50 8.25 -40.82 -0.34 0.17 16 47 H 0.40 1.60 8.93 -40.82 -0.36 1.24 16 48 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 49 H 0.08 0.89 8.06 -51.93 -0.42 0.48 16 LS Contribution 394.63 15.07 5.95 5.95 Total: -1.00 -37.41 394.63 -7.90 -45.31 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.70 Total: 0.60 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -0.82 Total: 10.09 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.58 Total: -42.66 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -0.88 Total: -36.21 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.41 -7.90 -45.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787838110.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.379 kcal (2) G-P(sol) polarization free energy of solvation -37.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds