Wall clock time and date at job start Wed Apr 1 2020 00:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.46493 * 119.99811 * 270.00105 * 3 2 1 5 5 C 1.50698 * 109.47208 * 89.99882 * 4 3 2 6 6 H 1.08002 * 120.00208 * 359.97438 * 5 4 3 7 7 C 1.37886 * 119.99967 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99927 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99800 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47282 * 89.99788 * 9 7 5 11 11 H 1.48507 * 109.46845 * 209.99944 * 9 7 5 12 12 H 1.48501 * 109.47292 * 329.99263 * 9 7 5 13 13 C 1.34778 * 120.00058 * 89.99676 * 3 2 1 14 14 O 1.21273 * 120.00182 * 179.97438 * 13 3 2 15 15 C 1.50702 * 120.00009 * 0.02562 * 13 3 2 16 16 O 1.45198 * 109.47104 * 179.97438 * 15 13 3 17 17 C 1.34229 * 116.99879 * 180.02562 * 16 15 13 18 18 O 1.20830 * 119.99969 * 0.02562 * 17 16 15 19 19 C 1.50705 * 120.00208 * 180.02562 * 17 16 15 20 20 H 1.08999 * 109.46927 * 300.00436 * 19 17 16 21 21 C 1.53003 * 109.46688 * 59.99904 * 19 17 16 22 22 C 1.53000 * 109.46751 * 180.02562 * 21 19 17 23 23 C 1.52999 * 109.46896 * 299.99888 * 22 21 19 24 24 C 1.53003 * 109.47329 * 60.00466 * 23 22 21 25 25 H 1.09000 * 109.47375 * 179.97438 * 24 23 22 26 26 C 1.50694 * 109.47043 * 59.99764 * 24 23 22 27 27 N 1.34778 * 120.00058 * 60.00460 * 26 24 23 28 28 O 1.21289 * 119.99866 * 239.99975 * 26 24 23 29 29 C 1.52999 * 109.47315 * 180.02562 * 19 17 16 30 30 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00146 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00128 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99674 * 2 1 3 34 34 H 1.08996 * 109.47853 * 240.00016 * 2 1 3 35 35 H 1.09007 * 109.47237 * 209.99803 * 4 3 2 36 36 H 1.08995 * 109.47637 * 329.99646 * 4 3 2 37 37 H 0.96999 * 119.99623 * 179.97438 * 8 7 5 38 38 H 1.09000 * 109.47328 * 300.00634 * 15 13 3 39 39 H 1.09009 * 109.47181 * 59.99924 * 15 13 3 40 40 H 1.09000 * 109.47375 * 300.00336 * 21 19 17 41 41 H 1.08999 * 109.47002 * 60.00578 * 21 19 17 42 42 H 1.08997 * 109.47369 * 59.99499 * 22 21 19 43 43 H 1.09001 * 109.46851 * 180.02562 * 22 21 19 44 44 H 1.09004 * 109.47487 * 180.02562 * 23 22 21 45 45 H 1.08999 * 109.47471 * 300.00272 * 23 22 21 46 46 H 0.96997 * 119.99574 * 359.97438 * 27 26 24 47 47 H 0.97004 * 119.99872 * 180.02562 * 27 26 24 48 48 H 1.09003 * 109.46996 * 300.00191 * 29 19 17 49 49 H 1.09007 * 109.46938 * 60.00127 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 1.0067 2.7822 -1.7037 6 1 0.1156 2.7247 -1.0962 7 6 0.9950 3.5048 -2.8780 8 7 2.0799 3.5744 -3.6182 9 14 -0.5615 4.3859 -3.4169 10 1 -0.5689 5.7626 -2.8603 11 1 -0.6051 4.4513 -4.8999 12 1 -1.7478 3.6443 -2.9191 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9923 1.3061 2.4723 16 8 2.3072 2.1955 3.5759 17 6 2.1371 1.7115 4.8163 18 8 1.7387 0.5818 4.9746 19 6 2.4431 2.5770 6.0115 20 1 3.4915 2.8740 5.9861 21 6 1.5585 3.8249 5.9772 22 6 1.8696 4.7039 7.1902 23 6 1.5934 3.9181 8.4736 24 6 2.4779 2.6702 8.5080 25 1 2.2815 2.1106 9.4225 26 6 3.9274 3.0808 8.4724 27 7 4.4303 3.8632 9.4479 28 8 4.6415 2.7071 7.5661 29 6 2.1671 1.7907 7.2947 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.0645 2.7985 -1.1384 36 1 2.5506 1.3452 -2.0283 37 1 2.0714 4.0824 -4.4445 38 1 0.9444 1.0114 2.5302 39 1 2.6228 0.4187 2.5299 40 1 1.7555 4.3849 5.0630 41 1 0.5101 3.5279 6.0025 42 1 2.9180 5.0008 7.1646 43 1 1.2391 5.5928 7.1660 44 1 1.8145 4.5444 9.3379 45 1 0.5449 3.6211 8.4994 46 1 3.8591 4.1622 10.1725 47 1 5.3633 4.1277 9.4248 48 1 1.1187 1.4933 7.3202 49 1 2.7976 0.9018 7.3188 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787838110.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:44 Heat of formation + Delta-G solvation = -204.244439 kcal Electronic energy + Delta-G solvation = -30519.950949 eV Core-core repulsion = 26252.298892 eV Total energy + Delta-G solvation = -4267.652057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.15198 -41.20118 -40.50067 -38.16928 -37.48265 -37.00051 -34.90021 -34.81361 -32.38686 -31.88064 -31.66008 -30.59425 -28.49551 -25.43598 -24.88736 -24.46281 -24.13716 -22.61717 -21.67457 -20.38694 -20.27626 -18.98826 -18.75298 -18.10726 -17.98639 -17.78817 -17.44402 -17.30237 -16.98069 -16.45320 -16.05898 -15.73907 -15.69997 -15.11496 -14.91382 -14.77237 -14.57356 -14.40667 -14.11640 -13.93558 -13.67665 -13.63624 -13.37322 -13.30872 -13.16106 -13.03038 -13.01169 -12.73565 -12.56643 -12.24616 -12.23759 -11.97533 -11.91794 -11.80447 -11.75064 -11.65201 -11.25459 -11.14922 -10.74873 -10.68685 -10.64041 -10.49359 -9.57535 -8.22666 -6.35738 1.05589 1.26807 1.36206 1.39367 1.48624 1.59039 1.70616 2.31586 2.43977 2.67007 3.07478 3.39272 3.45584 3.64042 3.73606 3.81902 3.93254 3.96840 4.07975 4.14081 4.17343 4.22857 4.38017 4.41373 4.45893 4.55750 4.60475 4.71713 4.86254 4.95217 4.97912 4.98834 5.02039 5.11229 5.15136 5.16959 5.20061 5.27429 5.31746 5.41846 5.45326 5.56235 5.78974 5.97682 6.04782 6.51301 6.54718 6.63823 6.72336 7.19588 7.36571 7.43929 8.85273 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017651 B = 0.002393 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.887884 B =11698.374678 C =12212.788934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.098 3.902 3 N -0.595 5.595 4 C 0.260 3.740 5 C -0.535 4.535 6 H 0.057 0.943 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.282 1.282 11 H -0.275 1.275 12 H -0.261 1.261 13 C 0.500 3.500 14 O -0.577 6.577 15 C 0.059 3.941 16 O -0.351 6.351 17 C 0.465 3.535 18 O -0.527 6.527 19 C -0.087 4.087 20 H 0.116 0.884 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.107 4.107 24 C -0.102 4.102 25 H 0.140 0.860 26 C 0.514 3.486 27 N -0.837 5.837 28 O -0.592 6.592 29 C -0.081 4.081 30 H 0.095 0.905 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.087 0.913 35 H -0.002 1.002 36 H 0.031 0.969 37 H 0.267 0.733 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.419 0.581 47 H 0.404 0.596 48 H 0.090 0.910 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.110 -3.532 31.068 31.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.024 4.024 3 N -0.328 5.328 4 C 0.140 3.860 5 C -0.574 4.574 6 H 0.075 0.925 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.208 1.208 11 H -0.200 1.200 12 H -0.185 1.185 13 C 0.287 3.713 14 O -0.457 6.457 15 C -0.017 4.017 16 O -0.266 6.266 17 C 0.310 3.690 18 O -0.416 6.416 19 C -0.106 4.106 20 H 0.134 0.866 21 C -0.152 4.152 22 C -0.157 4.157 23 C -0.144 4.144 24 C -0.123 4.123 25 H 0.158 0.842 26 C 0.300 3.700 27 N -0.400 5.400 28 O -0.472 6.472 29 C -0.118 4.118 30 H 0.114 0.886 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.016 0.984 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.122 0.878 45 H 0.114 0.886 46 H 0.250 0.750 47 H 0.235 0.765 48 H 0.109 0.891 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.654 -3.551 30.271 30.594 hybrid contribution -0.042 0.665 -0.963 1.171 sum -2.696 -2.886 29.308 29.573 Atomic orbital electron populations 1.22175 0.95108 1.03190 1.01819 1.21870 0.95608 0.80640 1.04294 1.48220 1.63669 1.15203 1.05659 1.18855 0.95790 0.91790 0.79595 1.21668 0.97770 1.31539 1.06378 0.92521 1.25852 0.99889 0.96969 0.96528 1.70052 1.29605 1.42405 1.14849 0.85442 0.79411 0.78605 0.77529 1.20759 1.19997 1.18525 1.20510 0.78414 0.86531 0.85818 1.90673 1.47503 1.19800 1.87750 1.22829 1.04463 0.92211 0.82244 1.86596 1.78913 1.45713 1.15418 1.24563 0.72932 0.87183 0.84337 1.90598 1.43597 1.20697 1.86720 1.21491 1.04518 0.95649 0.88940 0.86633 1.21580 0.99258 0.94095 1.00233 1.21590 1.01791 0.98624 0.93649 1.21655 1.00588 0.94111 0.98049 1.21461 0.90755 0.99152 1.00901 0.84225 1.21080 0.90722 0.77183 0.80967 1.43760 1.16081 1.52653 1.27510 1.90710 1.62535 1.57112 1.36887 1.21240 1.03072 0.97104 0.90433 0.88633 0.93562 0.93285 0.88200 0.89428 0.98370 0.95139 0.92438 0.86558 0.86384 0.92627 0.90287 0.92930 0.89265 0.87849 0.88567 0.74951 0.76480 0.89099 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.86 10.24 71.98 0.74 -4.12 16 2 C 0.10 3.07 5.98 86.38 0.52 3.59 16 3 N -0.60 -26.24 2.46 -826.18 -2.03 -28.26 16 4 C 0.26 14.31 5.20 85.63 0.45 14.76 16 5 C -0.53 -31.02 8.92 25.60 0.23 -30.80 16 6 H 0.06 3.24 7.42 -2.91 -0.02 3.22 16 7 C 0.01 0.37 5.46 84.66 0.46 0.83 16 8 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 9 Si 0.97 45.46 29.54 68.60 2.03 47.48 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 13 C 0.50 22.72 7.75 87.66 0.68 23.40 16 14 O -0.58 -32.53 16.08 15.79 0.25 -32.28 16 15 C 0.06 2.06 4.50 71.24 0.32 2.38 16 16 O -0.35 -13.06 9.66 -45.05 -0.44 -13.49 16 17 C 0.47 14.71 7.26 71.24 0.52 15.23 16 18 O -0.53 -17.24 15.73 21.95 0.35 -16.90 16 19 C -0.09 -2.18 2.33 -11.54 -0.03 -2.21 16 20 H 0.12 3.43 5.51 -2.39 -0.01 3.41 16 21 C -0.11 -2.37 5.14 30.60 0.16 -2.22 16 22 C -0.12 -1.58 5.70 30.59 0.17 -1.41 16 23 C -0.11 -0.67 5.36 30.59 0.16 -0.51 16 24 C -0.10 -1.04 3.01 -11.53 -0.03 -1.07 16 25 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 26 C 0.51 7.82 5.91 87.65 0.52 8.34 16 27 N -0.84 -5.42 8.77 -173.53 -1.52 -6.94 16 28 O -0.59 -15.80 14.49 -3.06 -0.04 -15.84 16 29 C -0.08 -1.48 3.67 30.61 0.11 -1.37 16 30 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.05 1.66 7.26 -2.39 -0.02 1.65 16 32 H 0.05 1.42 7.22 -2.38 -0.02 1.40 16 33 H 0.10 2.41 6.44 -2.39 -0.02 2.40 16 34 H 0.09 2.64 7.89 -2.39 -0.02 2.62 16 35 H 0.00 -0.12 7.42 -2.38 -0.02 -0.13 16 36 H 0.03 1.68 7.89 -2.39 -0.02 1.66 16 37 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.12 3.52 7.18 -2.39 -0.02 3.51 16 39 H 0.12 3.47 7.39 -2.38 -0.02 3.45 16 40 H 0.05 1.46 8.11 -2.39 -0.02 1.44 16 41 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.05 0.84 7.22 -2.39 -0.02 0.83 16 43 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.10 0.02 7.57 -2.38 -0.02 0.00 16 45 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.42 -0.47 8.25 -92.71 -0.76 -1.24 16 47 H 0.40 2.60 8.93 -92.71 -0.83 1.77 16 48 H 0.09 1.46 8.10 -2.39 -0.02 1.44 16 49 H 0.06 1.34 8.06 -2.38 -0.02 1.32 16 Total: -1.00 -87.81 394.63 3.24 -84.57 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -0.61 Total: 13.41 kcal Atomic # 6 Polarization: 19.87 SS G_CDS: 4.97 Total: 24.84 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -3.27 Total: -91.79 kcal Atomic # 8 Polarization: -78.63 SS G_CDS: 0.12 Total: -78.51 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -87.81 3.24 -84.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787838110.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.675 kcal (2) G-P(sol) polarization free energy of solvation -87.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds