Wall clock time and date at job start Wed Apr 1 2020 00:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46491 * 109.47052 * 2 1 4 4 C 1.46503 * 120.00090 * 270.00007 * 3 2 1 5 5 C 1.50704 * 109.47086 * 269.99952 * 4 3 2 6 6 H 1.08001 * 119.99934 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00255 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00061 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00364 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47039 * 89.99880 * 9 7 5 11 11 H 1.48496 * 109.47217 * 210.00226 * 9 7 5 12 12 H 1.48504 * 109.46567 * 330.00159 * 9 7 5 13 13 C 1.34781 * 120.00262 * 89.99873 * 3 2 1 14 14 O 1.21284 * 119.99956 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00022 * 0.02562 * 13 3 2 16 16 O 1.45196 * 109.47227 * 179.97438 * 15 13 3 17 17 C 1.34228 * 116.99930 * 179.97438 * 16 15 13 18 18 O 1.20824 * 120.00012 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99912 * 180.02562 * 17 16 15 20 20 H 1.09002 * 109.47476 * 59.99696 * 19 17 16 21 21 C 1.53006 * 109.47157 * 299.99511 * 19 17 16 22 22 C 1.52998 * 109.47141 * 180.02562 * 21 19 17 23 23 C 1.52992 * 109.47302 * 60.00000 * 22 21 19 24 24 C 1.52998 * 109.47451 * 300.00160 * 23 22 21 25 25 H 1.08998 * 109.46889 * 180.02562 * 24 23 22 26 26 C 1.50706 * 109.46708 * 299.99708 * 24 23 22 27 27 N 1.34773 * 120.00081 * 299.72691 * 26 24 23 28 28 O 1.21283 * 119.99503 * 119.99964 * 26 24 23 29 29 C 1.52998 * 109.47322 * 59.99853 * 24 23 22 30 30 H 1.08997 * 109.47255 * 299.99582 * 1 2 3 31 31 H 1.08993 * 109.47105 * 60.00003 * 1 2 3 32 32 H 1.09000 * 109.46909 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47168 * 239.99638 * 2 1 3 34 34 H 1.09004 * 109.46736 * 119.99691 * 2 1 3 35 35 H 1.08995 * 109.46735 * 29.99598 * 4 3 2 36 36 H 1.09000 * 109.47400 * 150.00239 * 4 3 2 37 37 H 0.96997 * 120.00252 * 179.97438 * 8 7 5 38 38 H 1.09001 * 109.47150 * 59.99528 * 15 13 3 39 39 H 1.09003 * 109.46912 * 299.99708 * 15 13 3 40 40 H 1.08998 * 109.46461 * 59.99932 * 21 19 17 41 41 H 1.09002 * 109.47078 * 300.00428 * 21 19 17 42 42 H 1.09002 * 109.47204 * 300.00007 * 22 21 19 43 43 H 1.09000 * 109.46662 * 180.02562 * 22 21 19 44 44 H 1.09005 * 109.47280 * 179.97438 * 23 22 21 45 45 H 1.09002 * 109.46985 * 59.99873 * 23 22 21 46 46 H 0.96998 * 120.00525 * 359.97438 * 27 26 24 47 47 H 0.97000 * 119.99521 * 180.02562 * 27 26 24 48 48 H 1.09002 * 109.47200 * 59.99673 * 29 24 23 49 49 H 1.09000 * 109.46986 * 180.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1492 2.3896 -2.8779 8 7 3.3492 3.1257 -3.6181 9 14 5.9132 2.0955 -3.4175 10 1 5.9760 0.8743 -4.2602 11 1 6.3924 3.2626 -4.2008 12 1 6.7735 1.9158 -2.2205 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1671 15 6 1.9923 1.3060 2.4723 16 8 2.3073 2.1955 3.5759 17 6 2.1363 1.7118 4.8163 18 8 1.7362 0.5828 4.9746 19 6 2.4422 2.5774 6.0114 20 1 1.8127 3.4669 5.9865 21 6 3.9142 2.9932 5.9765 22 6 4.2249 3.8714 7.1902 23 6 3.9473 3.0854 8.4731 24 6 2.4753 2.6695 8.5080 25 1 2.2775 2.1099 9.4222 26 6 1.6050 3.8994 8.4741 27 7 1.7017 4.8206 9.4532 28 8 0.8141 4.0578 7.5684 29 6 2.1645 1.7912 7.2944 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.5817 1.6876 -2.0283 36 1 2.0956 3.1410 -1.1384 37 1 3.6752 3.5161 -4.4440 38 1 2.6228 0.4188 2.5299 39 1 0.9444 1.0115 2.5303 40 1 4.1121 3.5528 5.0624 41 1 4.5437 2.1037 6.0014 42 1 3.5955 4.7610 7.1657 43 1 5.2735 4.1680 7.1651 44 1 4.1691 3.7110 9.3377 45 1 4.5768 2.1959 8.4976 46 1 2.3312 4.6918 10.1798 47 1 1.1412 5.6120 9.4315 48 1 2.7941 0.9017 7.3188 49 1 1.1157 1.4954 7.3190 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787838114.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:48 Heat of formation + Delta-G solvation = -178.220283 kcal Electronic energy + Delta-G solvation = -30444.639799 eV Core-core repulsion = 26178.116235 eV Total energy + Delta-G solvation = -4266.523565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.16968 -40.12791 -38.89233 -37.31714 -36.19949 -35.24369 -34.22770 -32.81948 -31.62728 -31.19498 -30.13508 -29.01823 -26.55040 -24.45099 -24.03637 -23.03734 -22.48777 -21.92639 -20.58025 -19.73138 -18.62036 -17.86107 -17.34735 -16.93982 -16.63499 -16.53875 -16.32231 -16.02548 -15.55410 -15.06858 -14.92866 -14.63241 -14.36647 -14.21307 -13.98668 -13.47026 -13.30230 -13.20990 -12.82939 -12.69232 -12.51357 -12.39138 -12.34897 -12.03526 -12.00017 -11.60848 -11.47451 -11.24786 -11.20252 -10.95670 -10.91185 -10.82924 -10.56307 -10.51267 -10.45019 -10.22897 -10.12593 -10.08920 -9.84551 -9.63597 -8.93369 -8.42873 -7.71057 -6.03664 -4.08438 2.25605 2.33355 2.59337 3.13979 3.30345 3.31772 3.37948 3.43170 3.90530 4.25187 4.30816 4.33050 4.45566 4.63917 4.78435 4.83218 4.91458 4.95852 5.01031 5.12556 5.19007 5.22747 5.29195 5.30899 5.41098 5.45481 5.54825 5.61406 5.63185 5.68706 5.77630 5.81629 5.89531 6.03723 6.06069 6.10612 6.22607 6.41265 6.48468 6.52832 6.93075 7.03823 7.43294 7.51152 7.83962 7.91739 7.93005 8.23027 8.34372 8.88262 9.03489 9.56444 11.04515 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016253 B = 0.002427 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.356255 B =11534.373915 C =12360.045947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.048 3.952 16 O -0.327 6.327 17 C 0.468 3.532 18 O -0.517 6.517 19 C -0.090 4.090 20 H 0.135 0.865 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.113 4.113 24 C -0.109 4.109 25 H 0.104 0.896 26 C 0.521 3.479 27 N -0.857 5.857 28 O -0.534 6.534 29 C -0.083 4.083 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.035 0.965 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.400 0.600 47 H 0.401 0.599 48 H 0.080 0.920 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.749 -2.566 28.151 28.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.327 5.327 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.394 6.394 15 C -0.029 4.029 16 O -0.242 6.242 17 C 0.311 3.689 18 O -0.405 6.405 19 C -0.108 4.108 20 H 0.152 0.848 21 C -0.153 4.153 22 C -0.159 4.159 23 C -0.151 4.151 24 C -0.130 4.130 25 H 0.122 0.878 26 C 0.306 3.694 27 N -0.420 5.420 28 O -0.410 6.410 29 C -0.121 4.121 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.229 0.771 47 H 0.232 0.768 48 H 0.099 0.901 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.106 -2.245 27.292 27.465 hybrid contribution 0.895 -0.143 -0.081 0.910 sum -1.211 -2.388 27.211 27.343 Atomic orbital electron populations 1.22234 0.96563 1.01661 1.02434 1.21498 0.93749 0.83989 1.02957 1.48205 1.63934 1.13391 1.07150 1.19325 0.96435 0.93729 0.77611 1.21428 0.96865 1.32006 1.06279 0.92417 1.24935 0.97905 0.94883 0.96383 1.69932 1.35717 1.33370 1.14321 0.86485 0.84629 0.77658 0.78582 1.20647 1.21076 1.19877 1.19733 0.79650 0.87143 0.84313 1.90712 1.44439 1.17507 1.86755 1.22941 1.02612 0.92689 0.84644 1.86575 1.78353 1.44870 1.14383 1.23818 0.73730 0.86700 0.84607 1.90622 1.42956 1.20200 1.86771 1.21353 1.00085 1.00156 0.89233 0.84769 1.21569 0.93298 1.00621 0.99774 1.21574 1.02249 0.98360 0.93668 1.21607 0.93685 1.01293 0.98490 1.21416 0.95722 0.94675 1.01219 0.87780 1.20680 0.82861 0.84594 0.81264 1.43909 1.44893 1.25431 1.27784 1.90720 1.37919 1.77697 1.34653 1.21221 1.03526 0.96914 0.90425 0.93110 0.91798 0.91925 0.89461 0.91781 0.94659 0.93710 0.92692 0.88841 0.88881 0.89695 0.91274 0.91635 0.90714 0.91272 0.90182 0.77147 0.76820 0.90117 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 10.24 37.16 0.38 -2.01 16 2 C 0.10 1.68 5.93 -4.04 -0.02 1.66 16 3 N -0.59 -12.88 2.46 -175.06 -0.43 -13.31 16 4 C 0.25 6.54 5.16 -5.19 -0.03 6.52 16 5 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 9 Si 0.90 22.02 29.54 -169.99 -5.02 16.99 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 13 C 0.51 11.23 7.75 -10.98 -0.09 11.14 16 14 O -0.52 -13.84 16.08 -14.11 -0.23 -14.07 16 15 C 0.05 0.85 4.50 36.00 0.16 1.02 16 16 O -0.33 -5.94 9.66 -45.90 -0.44 -6.38 16 17 C 0.47 7.34 7.25 36.01 0.26 7.60 16 18 O -0.52 -8.65 15.73 -18.75 -0.29 -8.94 16 19 C -0.09 -1.10 2.33 -91.76 -0.21 -1.32 16 20 H 0.13 1.87 5.51 -51.93 -0.29 1.58 16 21 C -0.12 -1.20 5.14 -26.73 -0.14 -1.34 16 22 C -0.12 -0.91 5.70 -26.74 -0.15 -1.06 16 23 C -0.11 -0.57 5.36 -26.74 -0.14 -0.72 16 24 C -0.11 -0.71 3.01 -91.77 -0.28 -0.98 16 25 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 26 C 0.52 4.31 5.91 -10.98 -0.06 4.25 16 27 N -0.86 -3.75 8.77 31.22 0.27 -3.47 16 28 O -0.53 -6.95 14.49 5.56 0.08 -6.87 16 29 C -0.08 -0.81 3.66 -26.73 -0.10 -0.91 16 30 H 0.05 0.70 7.22 -51.93 -0.38 0.32 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 34 H 0.06 0.90 6.44 -51.93 -0.33 0.56 16 35 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 36 H 0.04 1.34 7.42 -51.93 -0.39 0.95 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.09 1.48 7.39 -51.93 -0.38 1.09 16 39 H 0.09 1.46 7.18 -51.93 -0.37 1.09 16 40 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.55 7.22 -51.93 -0.37 0.18 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.19 7.58 -51.93 -0.39 -0.20 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.40 0.50 8.27 -40.82 -0.34 0.17 16 47 H 0.40 1.60 8.93 -40.82 -0.36 1.24 16 48 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 49 H 0.08 0.89 8.06 -51.93 -0.42 0.48 16 LS Contribution 396.67 15.07 5.98 5.98 Total: -1.00 -37.71 396.67 -7.97 -45.69 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.79 Total: 0.29 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -0.84 Total: 10.11 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.58 Total: -42.79 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.88 Total: -36.26 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.71 -7.97 -45.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787838114.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.534 kcal (2) G-P(sol) polarization free energy of solvation -37.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds