Wall clock time and date at job start Wed Apr 1 2020 00:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46491 * 109.47052 * 2 1 4 4 C 1.46503 * 120.00090 * 270.00007 * 3 2 1 5 5 C 1.50704 * 109.47086 * 269.99952 * 4 3 2 6 6 H 1.08001 * 119.99934 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00255 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00061 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00364 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47039 * 89.99880 * 9 7 5 11 11 H 1.48496 * 109.47217 * 210.00226 * 9 7 5 12 12 H 1.48504 * 109.46567 * 330.00159 * 9 7 5 13 13 C 1.34781 * 120.00262 * 89.99873 * 3 2 1 14 14 O 1.21284 * 119.99956 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00022 * 0.02562 * 13 3 2 16 16 O 1.45196 * 109.47227 * 179.97438 * 15 13 3 17 17 C 1.34228 * 116.99930 * 179.97438 * 16 15 13 18 18 O 1.20824 * 120.00012 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99912 * 180.02562 * 17 16 15 20 20 H 1.09002 * 109.47476 * 59.99696 * 19 17 16 21 21 C 1.53006 * 109.47157 * 299.99511 * 19 17 16 22 22 C 1.52998 * 109.47141 * 180.02562 * 21 19 17 23 23 C 1.52992 * 109.47302 * 60.00000 * 22 21 19 24 24 C 1.52998 * 109.47451 * 300.00160 * 23 22 21 25 25 H 1.08998 * 109.46889 * 180.02562 * 24 23 22 26 26 C 1.50706 * 109.46708 * 299.99708 * 24 23 22 27 27 N 1.34773 * 120.00081 * 299.72691 * 26 24 23 28 28 O 1.21283 * 119.99503 * 119.99964 * 26 24 23 29 29 C 1.52998 * 109.47322 * 59.99853 * 24 23 22 30 30 H 1.08997 * 109.47255 * 299.99582 * 1 2 3 31 31 H 1.08993 * 109.47105 * 60.00003 * 1 2 3 32 32 H 1.09000 * 109.46909 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47168 * 239.99638 * 2 1 3 34 34 H 1.09004 * 109.46736 * 119.99691 * 2 1 3 35 35 H 1.08995 * 109.46735 * 29.99598 * 4 3 2 36 36 H 1.09000 * 109.47400 * 150.00239 * 4 3 2 37 37 H 0.96997 * 120.00252 * 179.97438 * 8 7 5 38 38 H 1.09001 * 109.47150 * 59.99528 * 15 13 3 39 39 H 1.09003 * 109.46912 * 299.99708 * 15 13 3 40 40 H 1.08998 * 109.46461 * 59.99932 * 21 19 17 41 41 H 1.09002 * 109.47078 * 300.00428 * 21 19 17 42 42 H 1.09002 * 109.47204 * 300.00007 * 22 21 19 43 43 H 1.09000 * 109.46662 * 180.02562 * 22 21 19 44 44 H 1.09005 * 109.47280 * 179.97438 * 23 22 21 45 45 H 1.09002 * 109.46985 * 59.99873 * 23 22 21 46 46 H 0.96998 * 120.00525 * 359.97438 * 27 26 24 47 47 H 0.97000 * 119.99521 * 180.02562 * 27 26 24 48 48 H 1.09002 * 109.47200 * 59.99673 * 29 24 23 49 49 H 1.09000 * 109.46986 * 180.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1492 2.3896 -2.8779 8 7 3.3492 3.1257 -3.6181 9 14 5.9132 2.0955 -3.4175 10 1 5.9760 0.8743 -4.2602 11 1 6.3924 3.2626 -4.2008 12 1 6.7735 1.9158 -2.2205 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1671 15 6 1.9923 1.3060 2.4723 16 8 2.3073 2.1955 3.5759 17 6 2.1363 1.7118 4.8163 18 8 1.7362 0.5828 4.9746 19 6 2.4422 2.5774 6.0114 20 1 1.8127 3.4669 5.9865 21 6 3.9142 2.9932 5.9765 22 6 4.2249 3.8714 7.1902 23 6 3.9473 3.0854 8.4731 24 6 2.4753 2.6695 8.5080 25 1 2.2775 2.1099 9.4222 26 6 1.6050 3.8994 8.4741 27 7 1.7017 4.8206 9.4532 28 8 0.8141 4.0578 7.5684 29 6 2.1645 1.7912 7.2944 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.5817 1.6876 -2.0283 36 1 2.0956 3.1410 -1.1384 37 1 3.6752 3.5161 -4.4440 38 1 2.6228 0.4188 2.5299 39 1 0.9444 1.0115 2.5303 40 1 4.1121 3.5528 5.0624 41 1 4.5437 2.1037 6.0014 42 1 3.5955 4.7610 7.1657 43 1 5.2735 4.1680 7.1651 44 1 4.1691 3.7110 9.3377 45 1 4.5768 2.1959 8.4976 46 1 2.3312 4.6918 10.1798 47 1 1.1412 5.6120 9.4315 48 1 2.7941 0.9017 7.3188 49 1 1.1157 1.4954 7.3190 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787838114.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:47 Heat of formation + Delta-G solvation = -204.977667 kcal Electronic energy + Delta-G solvation = -30445.800087 eV Core-core repulsion = 26178.116235 eV Total energy + Delta-G solvation = -4267.683852 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.15593 -41.20364 -40.50265 -38.17282 -37.48455 -36.99640 -34.95678 -34.81607 -32.39149 -31.88287 -31.74148 -30.57871 -28.43027 -25.44282 -24.91264 -24.62159 -24.04699 -22.61717 -21.67768 -20.37998 -20.28618 -18.99871 -18.65977 -18.16813 -17.99434 -17.76109 -17.45155 -17.31857 -17.05138 -16.43388 -16.04871 -15.81498 -15.73007 -15.08695 -14.88688 -14.80579 -14.65006 -14.48311 -14.12968 -13.85390 -13.64835 -13.63892 -13.35838 -13.30628 -13.16246 -13.08983 -13.02714 -12.69899 -12.52597 -12.25543 -12.23664 -12.08031 -11.91968 -11.83115 -11.78070 -11.73305 -11.25523 -11.14922 -10.75789 -10.68763 -10.65474 -10.49506 -9.57594 -8.24320 -6.39157 1.05278 1.26680 1.36211 1.39464 1.49682 1.58348 1.70611 2.30661 2.43482 2.66837 3.05562 3.38448 3.45064 3.63953 3.73251 3.81819 3.92657 3.95658 4.07962 4.11659 4.17120 4.22822 4.34867 4.38007 4.45778 4.55600 4.60473 4.71617 4.85508 4.91132 4.97797 4.98739 4.99902 5.11195 5.14772 5.16009 5.18910 5.27349 5.31345 5.32933 5.41794 5.52266 5.77723 5.97574 6.02397 6.50765 6.54654 6.63357 6.69570 7.18451 7.34527 7.43856 8.83374 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016253 B = 0.002427 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.356255 B =11534.373915 C =12360.045947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.970 3.030 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.499 3.501 14 O -0.578 6.578 15 C 0.060 3.940 16 O -0.351 6.351 17 C 0.465 3.535 18 O -0.527 6.527 19 C -0.087 4.087 20 H 0.116 0.884 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.107 4.107 24 C -0.102 4.102 25 H 0.140 0.860 26 C 0.514 3.486 27 N -0.836 5.836 28 O -0.592 6.592 29 C -0.081 4.081 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.030 0.970 36 H -0.002 1.002 37 H 0.268 0.732 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.052 0.948 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.419 0.581 47 H 0.404 0.596 48 H 0.091 0.909 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.277 -4.516 30.985 31.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.794 3.206 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.287 3.713 14 O -0.458 6.458 15 C -0.017 4.017 16 O -0.266 6.266 17 C 0.310 3.690 18 O -0.416 6.416 19 C -0.106 4.106 20 H 0.134 0.866 21 C -0.152 4.152 22 C -0.157 4.157 23 C -0.144 4.144 24 C -0.123 4.123 25 H 0.158 0.842 26 C 0.300 3.700 27 N -0.400 5.400 28 O -0.473 6.473 29 C -0.119 4.119 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.048 0.952 36 H 0.016 0.984 37 H 0.077 0.923 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.122 0.878 45 H 0.114 0.886 46 H 0.251 0.749 47 H 0.235 0.765 48 H 0.109 0.891 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.637 -4.238 30.189 30.492 hybrid contribution 0.372 0.486 -0.942 1.124 sum -0.266 -3.752 29.247 29.487 Atomic orbital electron populations 1.22179 0.94421 1.03827 1.01730 1.21867 0.95500 0.80964 1.04442 1.48214 1.63579 1.15277 1.05649 1.18806 0.95760 0.91590 0.79688 1.21682 0.97701 1.32289 1.06641 0.92742 1.25880 1.02571 0.94358 0.96361 1.70053 1.37862 1.34055 1.14786 0.85378 0.78747 0.78250 0.78209 1.18656 1.20595 1.19761 1.20531 0.78340 0.86634 0.85837 1.90674 1.47145 1.20180 1.87756 1.22819 1.04440 0.92215 0.82234 1.86597 1.78874 1.45751 1.15420 1.24564 0.73052 0.87070 0.84330 1.90596 1.43519 1.20772 1.86714 1.21494 1.00901 0.99268 0.88933 0.86639 1.21582 0.92115 1.01248 1.00229 1.21588 1.02810 0.97606 0.93648 1.21652 0.92515 1.02181 0.98050 1.21455 0.96326 0.93589 1.00895 0.84215 1.21080 0.82382 0.85505 0.80985 1.43757 1.44576 1.24500 1.27167 1.90708 1.40500 1.79003 1.37041 1.21234 1.02556 0.97628 0.90432 0.92764 0.93600 0.88236 0.89732 0.88507 0.95180 0.98393 0.92324 0.86400 0.86552 0.92623 0.90271 0.92949 0.89259 0.87848 0.88560 0.74946 0.76484 0.89082 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.34 10.24 71.98 0.74 -3.60 16 2 C 0.09 3.00 5.93 86.38 0.51 3.51 16 3 N -0.59 -26.49 2.46 -826.15 -2.03 -28.52 16 4 C 0.26 14.56 5.16 85.63 0.44 15.00 16 5 C -0.54 -32.00 9.39 25.60 0.24 -31.76 16 6 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 7 C 0.01 0.43 5.46 84.65 0.46 0.89 16 8 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 9 Si 0.97 45.48 29.54 68.60 2.03 47.50 16 10 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 13 C 0.50 22.86 7.75 87.66 0.68 23.54 16 14 O -0.58 -32.74 16.08 15.76 0.25 -32.49 16 15 C 0.06 2.08 4.50 71.24 0.32 2.40 16 16 O -0.35 -13.11 9.66 -45.05 -0.44 -13.55 16 17 C 0.47 14.76 7.25 71.24 0.52 15.28 16 18 O -0.53 -17.28 15.73 21.97 0.35 -16.94 16 19 C -0.09 -2.18 2.33 -11.54 -0.03 -2.21 16 20 H 0.12 3.44 5.51 -2.39 -0.01 3.42 16 21 C -0.11 -2.38 5.14 30.60 0.16 -2.22 16 22 C -0.12 -1.59 5.70 30.59 0.17 -1.41 16 23 C -0.11 -0.67 5.36 30.59 0.16 -0.51 16 24 C -0.10 -1.04 3.01 -11.54 -0.03 -1.07 16 25 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 26 C 0.51 7.85 5.91 87.66 0.52 8.36 16 27 N -0.84 -5.44 8.77 -173.53 -1.52 -6.96 16 28 O -0.59 -15.84 14.49 -3.04 -0.04 -15.88 16 29 C -0.08 -1.48 3.66 30.60 0.11 -1.37 16 30 H 0.05 1.40 7.22 -2.39 -0.02 1.38 16 31 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.08 2.75 8.07 -2.39 -0.02 2.74 16 34 H 0.10 2.47 6.44 -2.39 -0.02 2.45 16 35 H 0.03 1.67 8.07 -2.39 -0.02 1.66 16 36 H 0.00 -0.13 7.42 -2.39 -0.02 -0.15 16 37 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 38 H 0.12 3.53 7.39 -2.39 -0.02 3.51 16 39 H 0.12 3.51 7.18 -2.39 -0.02 3.49 16 40 H 0.05 1.46 8.11 -2.39 -0.02 1.44 16 41 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.05 0.84 7.22 -2.39 -0.02 0.83 16 43 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.10 0.02 7.58 -2.38 -0.02 0.01 16 45 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.42 -0.47 8.27 -92.71 -0.77 -1.23 16 47 H 0.40 2.61 8.93 -92.71 -0.83 1.78 16 48 H 0.09 1.47 8.10 -2.39 -0.02 1.45 16 49 H 0.06 1.34 8.06 -2.39 -0.02 1.32 16 Total: -1.00 -88.38 396.67 3.24 -85.14 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -0.61 Total: 13.51 kcal Atomic # 6 Polarization: 19.85 SS G_CDS: 4.97 Total: 24.82 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -3.27 Total: -92.12 kcal Atomic # 8 Polarization: -78.97 SS G_CDS: 0.12 Total: -78.85 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -88.38 3.24 -85.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787838114.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.843 kcal (2) G-P(sol) polarization free energy of solvation -88.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds