Wall clock time and date at job start Tue Mar 31 2020 23:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21282 * 120.00167 * 2 1 4 4 N 1.34779 * 119.99651 * 179.97438 * 2 1 3 5 5 C 1.46928 * 120.62726 * 185.44195 * 4 2 1 6 6 C 1.53192 * 108.77474 * 126.37531 * 5 4 2 7 7 C 1.53044 * 109.31540 * 54.62826 * 6 5 4 8 8 C 1.53038 * 109.53780 * 298.64207 * 7 6 5 9 9 H 1.08999 * 109.52171 * 301.39060 * 8 7 6 10 10 C 1.50704 * 109.49380 * 181.31492 * 8 7 6 11 11 O 1.20831 * 120.00087 * 0.15872 * 10 8 7 12 12 O 1.34229 * 119.99914 * 180.15637 * 10 8 7 13 13 C 1.45196 * 116.99990 * 179.97438 * 12 10 8 14 14 H 1.09000 * 109.47537 * 330.01295 * 13 12 10 15 15 C 1.53002 * 109.46527 * 90.00473 * 13 12 10 16 16 C 1.50697 * 109.47541 * 210.00076 * 13 12 10 17 17 O 1.21278 * 119.99808 * 344.53011 * 16 13 12 18 18 N 1.34777 * 120.00250 * 164.52410 * 16 13 12 19 19 C 1.46504 * 119.99879 * 354.66598 * 18 16 13 20 20 C 1.46494 * 120.00306 * 174.66437 * 18 16 13 21 21 C 1.50701 * 109.47048 * 90.00021 * 20 18 16 22 22 H 1.07997 * 120.00419 * 359.97438 * 21 20 18 23 23 C 1.37884 * 120.00224 * 180.02562 * 21 20 18 24 24 N 1.31510 * 120.00454 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99628 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47486 * 270.00345 * 25 23 21 27 27 H 1.48508 * 109.46854 * 150.00143 * 25 23 21 28 28 H 1.48500 * 109.47052 * 30.00825 * 25 23 21 29 29 C 1.46924 * 120.63381 * 5.42420 * 4 2 1 30 30 H 1.09000 * 109.47381 * 185.44722 * 1 2 3 31 31 H 1.09003 * 109.46978 * 305.44690 * 1 2 3 32 32 H 1.08997 * 109.46852 * 65.44241 * 1 2 3 33 33 H 1.09002 * 109.58751 * 246.15710 * 5 4 2 34 34 H 1.08993 * 109.59322 * 6.44302 * 5 4 2 35 35 H 1.08998 * 109.49824 * 174.58603 * 6 5 4 36 36 H 1.09004 * 109.49498 * 294.68343 * 6 5 4 37 37 H 1.09004 * 109.45885 * 178.61165 * 7 6 5 38 38 H 1.09000 * 109.45540 * 58.65915 * 7 6 5 39 39 H 1.09004 * 109.47545 * 174.88996 * 15 13 12 40 40 H 1.09001 * 109.47795 * 294.89128 * 15 13 12 41 41 H 1.09003 * 109.47078 * 54.89260 * 15 13 12 42 42 H 1.09002 * 109.47037 * 275.28840 * 19 18 16 43 43 H 1.09004 * 109.47188 * 35.28789 * 19 18 16 44 44 H 1.08999 * 109.47146 * 155.28955 * 19 18 16 45 45 H 1.09005 * 109.47122 * 330.00670 * 20 18 16 46 46 H 1.08998 * 109.47245 * 209.99986 * 20 18 16 47 47 H 0.96993 * 120.00076 * 179.97438 * 24 23 21 48 48 H 1.09000 * 109.58851 * 113.83826 * 29 4 2 49 49 H 1.09003 * 109.70310 * 353.48671 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6451 -1.1862 0.1204 6 6 4.0328 -2.1066 1.2821 7 6 3.4016 -3.4844 1.0686 8 6 1.8772 -3.3511 1.0459 9 1 1.5357 -2.9152 1.9848 10 6 1.2558 -4.7125 0.8680 11 8 1.9597 -5.6900 0.7724 12 8 -0.0794 -4.8392 0.8159 13 6 -0.6080 -6.1803 0.6425 14 1 0.1024 -6.7802 0.0738 15 6 -0.8336 -6.8208 2.0136 16 6 -1.9168 -6.1122 -0.1015 17 8 -2.5005 -5.0543 -0.2059 18 7 -2.4386 -7.2268 -0.6508 19 6 -1.6796 -8.4797 -0.6267 20 6 -3.7647 -7.1857 -1.2719 21 6 -3.6254 -6.8356 -2.7310 22 1 -2.6469 -6.6607 -3.1534 23 6 -4.7472 -6.7374 -3.5267 24 7 -4.6257 -6.4314 -4.7999 25 14 -6.4397 -7.0391 -2.7960 26 1 -6.7826 -8.4787 -2.9190 27 1 -7.4459 -6.2264 -3.5258 28 1 -6.4362 -6.6518 -1.3624 29 6 1.4651 -2.4449 -0.1184 30 1 -0.3634 -1.0230 0.0976 31 1 -0.3633 0.5960 0.8372 32 1 -0.3633 0.4271 -0.9347 33 1 4.0827 -1.5615 -0.8047 34 1 4.0091 -0.1772 0.3138 35 1 5.1175 -2.2055 1.3215 36 1 3.6714 -1.6821 2.2187 37 1 3.6961 -4.1486 1.8812 38 1 3.7441 -3.8977 0.1200 39 1 -1.3143 -7.7909 1.8869 40 1 0.1252 -6.9532 2.5150 41 1 -1.4724 -6.1747 2.6157 42 1 -0.9928 -8.5047 -1.4728 43 1 -1.1137 -8.5439 0.3027 44 1 -2.3675 -9.3226 -0.6922 45 1 -4.3758 -6.4325 -0.7743 46 1 -4.2412 -8.1614 -1.1762 47 1 -5.4148 -6.3627 -5.3596 48 1 1.7249 -2.9227 -1.0630 49 1 0.3901 -2.2687 -0.0816 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791848762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:42 Heat of formation + Delta-G solvation = -169.526065 kcal Electronic energy + Delta-G solvation = -30837.528278 eV Core-core repulsion = 26571.381723 eV Total energy + Delta-G solvation = -4266.146555 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.19002 -41.20486 -40.52801 -38.53638 -37.57823 -36.69766 -34.82027 -34.21089 -33.48649 -32.58519 -30.42073 -30.20349 -27.61180 -26.44406 -26.29968 -25.47607 -23.92141 -22.63517 -21.38200 -20.39176 -20.14005 -19.15593 -19.03881 -18.37538 -18.06649 -17.52603 -17.37155 -16.82949 -16.72025 -16.56843 -16.19629 -15.80127 -15.39976 -15.07214 -15.03445 -14.75114 -14.56325 -14.43827 -14.29515 -14.09355 -13.95327 -13.76648 -13.58883 -13.47465 -13.12002 -13.06996 -12.96098 -12.82486 -12.69170 -12.62546 -12.38308 -12.06679 -12.03053 -12.01416 -11.92191 -11.79350 -11.75754 -11.59119 -10.89889 -10.81057 -10.64788 -9.85070 -9.49998 -8.32836 -6.38746 0.94156 1.21000 1.34563 1.39541 1.48922 1.49605 1.62266 1.89444 2.32105 2.33318 3.01250 3.33359 3.37906 3.44621 3.59928 3.66997 3.79502 3.87108 3.93717 4.06631 4.09969 4.18128 4.28126 4.39903 4.47886 4.55441 4.57258 4.59767 4.64200 4.64680 4.76160 4.79379 4.84529 4.89552 4.91503 4.92044 5.03644 5.09990 5.11307 5.25530 5.29917 5.41830 5.44403 5.54726 6.21616 6.21740 6.47307 6.59612 6.62900 7.02037 7.16308 7.29434 8.84278 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012641 B = 0.002943 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.419883 B = 9513.077396 C =10955.623444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.515 3.485 3 O -0.589 6.589 4 N -0.608 5.608 5 C 0.099 3.901 6 C -0.120 4.120 7 C -0.101 4.101 8 C -0.085 4.085 9 H 0.134 0.866 10 C 0.470 3.530 11 O -0.517 6.517 12 O -0.340 6.340 13 C 0.077 3.923 14 H 0.113 0.887 15 C -0.158 4.158 16 C 0.502 3.498 17 O -0.568 6.568 18 N -0.599 5.599 19 C 0.067 3.933 20 C 0.225 3.775 21 C -0.539 4.539 22 H 0.025 0.975 23 C 0.010 3.990 24 N -0.947 5.947 25 Si 0.950 3.050 26 H -0.251 1.251 27 H -0.284 1.284 28 H -0.250 1.250 29 C 0.109 3.891 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.025 0.975 46 H 0.058 0.942 47 H 0.268 0.732 48 H 0.076 0.924 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.918 1.357 17.818 23.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.306 3.694 3 O -0.470 6.470 4 N -0.341 5.341 5 C -0.022 4.022 6 C -0.158 4.158 7 C -0.138 4.138 8 C -0.105 4.105 9 H 0.152 0.848 10 C 0.312 3.688 11 O -0.405 6.405 12 O -0.255 6.255 13 C 0.019 3.981 14 H 0.130 0.870 15 C -0.215 4.215 16 C 0.288 3.712 17 O -0.447 6.447 18 N -0.331 5.331 19 C -0.074 4.074 20 C 0.103 3.897 21 C -0.577 4.577 22 H 0.043 0.957 23 C -0.188 4.188 24 N -0.587 5.587 25 Si 0.772 3.228 26 H -0.175 1.175 27 H -0.210 1.210 28 H -0.174 1.174 29 C -0.014 4.014 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.121 0.879 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.119 0.881 44 H 0.111 0.889 45 H 0.043 0.957 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.094 0.906 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.020 2.141 17.561 23.207 hybrid contribution -0.791 -0.091 -0.805 1.132 sum 14.229 2.050 16.756 22.078 Atomic orbital electron populations 1.22112 0.89684 1.06045 1.06271 1.21274 0.91690 0.82475 0.74004 1.90677 1.71683 1.32275 1.52392 1.48189 1.08066 1.05575 1.72234 1.21820 0.78835 1.01784 0.99803 1.21870 1.02543 0.93326 0.98043 1.21466 0.89889 0.98257 1.04225 1.21528 0.97818 0.88190 1.02993 0.84811 1.24047 0.80182 0.92787 0.71738 1.90648 1.62679 1.41126 1.46097 1.86623 1.24077 1.32581 1.82263 1.22574 0.92857 0.82588 1.00110 0.86980 1.22200 1.04729 1.02086 0.92466 1.20640 0.87106 0.83820 0.79589 1.90666 1.63017 1.30056 1.60960 1.47832 1.19479 1.10405 1.55390 1.22180 0.97170 0.85249 1.02827 1.19453 0.81187 0.97841 0.91238 1.21549 0.93641 1.48155 0.94387 0.95688 1.25894 1.03962 0.94027 0.94935 1.70055 1.31517 1.49855 1.07224 0.85682 0.77952 0.79600 0.79546 1.17496 1.21020 1.17390 1.21831 0.99125 0.83123 0.97306 0.88635 0.87351 0.88142 0.90596 0.89746 0.87664 0.90754 0.89574 0.91102 0.87909 0.89057 0.90858 0.93154 0.88115 0.88913 0.95703 0.92420 0.92283 0.90599 0.87077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.33 10.09 71.24 0.72 -2.61 16 2 C 0.51 11.97 7.80 87.66 0.68 12.65 16 3 O -0.59 -18.13 16.54 -3.04 -0.05 -18.18 16 4 N -0.61 -11.69 2.97 -818.92 -2.43 -14.12 16 5 C 0.10 1.59 6.42 86.36 0.55 2.14 16 6 C -0.12 -1.33 6.08 30.67 0.19 -1.14 16 7 C -0.10 -1.36 4.46 30.62 0.14 -1.23 16 8 C -0.09 -1.41 2.78 -11.46 -0.03 -1.44 16 9 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 10 C 0.47 10.79 7.23 71.24 0.52 11.31 16 11 O -0.52 -13.38 15.20 21.95 0.33 -13.04 16 12 O -0.34 -9.48 9.39 -45.19 -0.42 -9.91 16 13 C 0.08 2.16 2.14 29.85 0.06 2.22 16 14 H 0.11 2.98 6.35 -2.39 -0.02 2.96 16 15 C -0.16 -3.09 9.20 71.98 0.66 -2.42 16 16 C 0.50 19.48 6.95 87.66 0.61 20.09 16 17 O -0.57 -27.54 16.21 15.27 0.25 -27.29 16 18 N -0.60 -22.90 2.86 -851.13 -2.43 -25.33 16 19 C 0.07 1.78 9.84 127.77 1.26 3.04 16 20 C 0.22 10.38 4.23 85.63 0.36 10.75 16 21 C -0.54 -31.02 9.94 25.60 0.25 -30.77 16 22 H 0.02 1.63 8.06 -2.91 -0.02 1.60 16 23 C 0.01 0.56 5.47 84.66 0.46 1.03 16 24 N -0.95 -59.14 13.96 21.45 0.30 -58.85 16 25 Si 0.95 42.86 27.47 68.60 1.88 44.74 16 26 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 27 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 28 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 29 C 0.11 2.01 5.56 86.36 0.48 2.49 16 30 H 0.10 1.62 5.16 -2.39 -0.01 1.61 16 31 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.58 7.04 -2.39 -0.02 1.56 16 35 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.09 1.09 8.07 -2.39 -0.02 1.08 16 38 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 39 H 0.10 1.64 6.24 -2.38 -0.01 1.63 16 40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.10 1.82 4.87 -2.39 -0.01 1.81 16 44 H 0.09 2.15 7.83 -2.39 -0.02 2.13 16 45 H 0.02 1.24 6.56 -2.38 -0.02 1.22 16 46 H 0.06 2.35 7.29 -2.39 -0.02 2.33 16 47 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 48 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.11 2.12 5.07 -2.39 -0.01 2.11 16 Total: -1.00 -83.35 393.91 5.24 -78.11 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.90 Total: 17.77 kcal Atomic # 6 Polarization: 19.19 SS G_CDS: 6.91 Total: 26.10 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -4.57 Total: -98.30 kcal Atomic # 8 Polarization: -68.53 SS G_CDS: 0.11 Total: -68.42 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.88 Total: 44.74 kcal Total: -83.35 5.24 -78.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791848762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.417 kcal (2) G-P(sol) polarization free energy of solvation -83.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds