Wall clock time and date at job start Tue Mar 31 2020 23:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21278 * 120.00396 * 2 1 4 4 N 1.34775 * 119.99503 * 180.02562 * 2 1 3 5 5 C 1.46926 * 120.63148 * 354.43100 * 4 2 1 6 6 C 1.53197 * 108.77282 * 233.62584 * 5 4 2 7 7 C 1.53043 * 109.31432 * 305.36650 * 6 5 4 8 8 C 1.53042 * 109.53638 * 61.36187 * 7 6 5 9 9 H 1.09002 * 109.49662 * 58.59275 * 8 7 6 10 10 C 1.50700 * 109.52386 * 178.66336 * 8 7 6 11 11 O 1.20829 * 119.99911 * 359.92234 * 10 8 7 12 12 O 1.34222 * 120.00558 * 179.91883 * 10 8 7 13 13 C 1.45196 * 117.00671 * 180.02562 * 12 10 8 14 14 H 1.09005 * 109.46693 * 30.00497 * 13 12 10 15 15 C 1.52998 * 109.47374 * 270.00457 * 13 12 10 16 16 C 1.50699 * 109.47311 * 150.00002 * 13 12 10 17 17 O 1.21279 * 120.00182 * 14.16847 * 16 13 12 18 18 N 1.34776 * 120.00418 * 194.16417 * 16 13 12 19 19 C 1.46508 * 119.99723 * 5.50368 * 18 16 13 20 20 C 1.46493 * 120.00656 * 185.49804 * 18 16 13 21 21 C 1.50706 * 109.47009 * 90.00114 * 20 18 16 22 22 H 1.08006 * 119.99700 * 0.02562 * 21 20 18 23 23 C 1.37871 * 120.00037 * 180.02562 * 21 20 18 24 24 N 1.31516 * 120.00237 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99925 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47207 * 60.00019 * 25 23 21 27 27 H 1.48503 * 109.46891 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.46954 * 299.99810 * 25 23 21 29 29 C 1.46926 * 120.62717 * 174.44886 * 4 2 1 30 30 H 1.08992 * 109.47354 * 182.92039 * 1 2 3 31 31 H 1.09002 * 109.46603 * 302.91915 * 1 2 3 32 32 H 1.09004 * 109.47310 * 62.91649 * 1 2 3 33 33 H 1.08992 * 109.58967 * 353.41739 * 5 4 2 34 34 H 1.08997 * 109.58722 * 113.70458 * 5 4 2 35 35 H 1.09005 * 109.49486 * 65.31600 * 6 5 4 36 36 H 1.08993 * 109.49952 * 185.38158 * 6 5 4 37 37 H 1.08995 * 109.46095 * 301.34282 * 7 6 5 38 38 H 1.08995 * 109.45755 * 181.38473 * 7 6 5 39 39 H 1.09003 * 109.46610 * 305.11550 * 15 13 12 40 40 H 1.08996 * 109.47446 * 65.11141 * 15 13 12 41 41 H 1.09000 * 109.47391 * 185.12052 * 15 13 12 42 42 H 1.09005 * 109.47073 * 93.75545 * 19 18 16 43 43 H 1.08995 * 109.47293 * 213.76280 * 19 18 16 44 44 H 1.08999 * 109.46783 * 333.76045 * 19 18 16 45 45 H 1.08997 * 109.47403 * 210.00534 * 20 18 16 46 46 H 1.08997 * 109.47285 * 330.00542 * 20 18 16 47 47 H 0.96995 * 120.00071 * 179.97438 * 24 23 21 48 48 H 1.09002 * 109.58858 * 6.58576 * 29 4 2 49 49 H 1.09004 * 109.58772 * 246.15677 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.4653 -2.4447 0.1216 6 6 2.0712 -3.2402 1.2822 7 6 3.5794 -3.3827 1.0653 8 6 4.2262 -1.9959 1.0405 9 1 4.0213 -1.4820 1.9796 10 6 5.7156 -2.1380 0.8597 11 8 6.2103 -3.2360 0.7621 12 8 6.4926 -1.0448 0.8070 13 6 7.9181 -1.2571 0.6306 14 1 8.0815 -2.1717 0.0606 15 6 8.5883 -1.3831 2.0002 16 6 8.5117 -0.0888 -0.1135 17 8 7.8774 0.9376 -0.2363 18 7 9.7477 -0.1843 -0.6425 19 6 10.4660 -1.4605 -0.5999 20 6 10.3728 0.9877 -1.2601 21 6 11.1515 1.7492 -0.2185 22 1 11.1783 1.3951 0.8015 23 6 11.8296 2.8977 -0.5676 24 7 11.7973 3.3286 -1.8098 25 14 12.7954 3.8412 0.7235 26 1 13.8478 2.9628 1.2943 27 1 13.4280 5.0301 0.0976 28 1 11.8775 4.2811 1.8047 29 6 3.6448 -1.1864 -0.1228 30 1 -0.3633 -1.0262 0.0524 31 1 -0.3632 0.5585 0.8627 32 1 -0.3634 0.4679 -0.9150 33 1 0.4104 -2.2552 0.3198 34 1 1.5672 -3.0106 -0.8044 35 1 1.8865 -2.7145 2.2191 36 1 1.6141 -4.2287 1.3235 37 1 3.7638 -3.8864 0.1165 38 1 4.0092 -3.9694 1.8772 39 1 8.3490 -0.5075 2.6037 40 1 8.2248 -2.2802 2.5015 41 1 9.6685 -1.4513 1.8713 42 1 10.2891 -2.0081 -1.5257 43 1 11.5337 -1.2729 -0.4870 44 1 10.1094 -2.0501 0.2447 45 1 11.0468 0.6644 -2.0533 46 1 9.6007 1.6325 -1.6799 47 1 12.2741 4.1368 -2.0553 48 1 4.0280 -0.1666 -0.0858 49 1 3.9265 -1.6507 -1.0679 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791848766.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:45 Heat of formation + Delta-G solvation = -148.460632 kcal Electronic energy + Delta-G solvation = -30624.588689 eV Core-core repulsion = 26359.355599 eV Total energy + Delta-G solvation = -4265.233089 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.11082 -40.18595 -38.98578 -37.58925 -36.39438 -34.87683 -33.58580 -32.83806 -32.17980 -31.40942 -29.87059 -27.77061 -26.10580 -25.78861 -25.00382 -24.11184 -22.78607 -21.78356 -20.36583 -19.36040 -18.81286 -17.93967 -17.44731 -16.76810 -16.60048 -16.44108 -15.96070 -15.83807 -15.49942 -15.14025 -14.83339 -14.64874 -14.31998 -14.26246 -13.72283 -13.64519 -13.58813 -13.25796 -13.10032 -12.82454 -12.67712 -12.38767 -12.31386 -12.17841 -12.06023 -11.89462 -11.70037 -11.43858 -11.41611 -11.31163 -11.22297 -11.03763 -10.92347 -10.71916 -10.60976 -10.53435 -10.16863 -10.00598 -9.66638 -9.03054 -8.89589 -8.43917 -7.70956 -6.04981 -4.10454 2.00646 2.36799 2.39716 2.71040 3.24792 3.32188 3.36929 3.40689 3.86266 4.12733 4.22997 4.38117 4.43289 4.44184 4.51583 4.60210 4.78812 4.81716 4.89979 5.01789 5.03841 5.06779 5.10771 5.11289 5.29468 5.30071 5.37792 5.42964 5.50992 5.52416 5.57556 5.66404 5.70541 5.78120 5.85167 5.88108 6.07246 6.09713 6.22875 6.40275 6.99731 7.06439 7.41727 7.47210 7.65283 7.90746 7.90791 8.20581 8.30379 8.84927 8.99918 9.54603 11.03177 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015393 B = 0.002591 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.600614 B =10805.151417 C =11942.264899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.510 3.490 3 O -0.534 6.534 4 N -0.615 5.615 5 C 0.098 3.902 6 C -0.134 4.134 7 C -0.105 4.105 8 C -0.093 4.093 9 H 0.114 0.886 10 C 0.468 3.532 11 O -0.508 6.508 12 O -0.322 6.322 13 C 0.069 3.931 14 H 0.103 0.897 15 C -0.165 4.165 16 C 0.509 3.491 17 O -0.517 6.517 18 N -0.597 5.597 19 C 0.073 3.927 20 C 0.246 3.754 21 C -0.530 4.530 22 H 0.057 0.943 23 C 0.062 3.938 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.276 1.276 29 C 0.119 3.881 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.048 0.952 43 H 0.078 0.922 44 H 0.061 0.939 45 H 0.036 0.964 46 H 0.047 0.953 47 H 0.265 0.735 48 H 0.113 0.887 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.446 -18.286 5.570 28.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.299 3.701 3 O -0.409 6.409 4 N -0.350 5.350 5 C -0.024 4.024 6 C -0.172 4.172 7 C -0.142 4.142 8 C -0.113 4.113 9 H 0.132 0.868 10 C 0.310 3.690 11 O -0.396 6.396 12 O -0.236 6.236 13 C 0.011 3.989 14 H 0.120 0.880 15 C -0.222 4.222 16 C 0.293 3.707 17 O -0.392 6.392 18 N -0.331 5.331 19 C -0.071 4.071 20 C 0.127 3.873 21 C -0.569 4.569 22 H 0.076 0.924 23 C -0.140 4.140 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.201 1.201 29 C -0.004 4.004 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.054 0.946 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.131 0.869 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.202 -17.289 5.314 27.869 hybrid contribution 0.862 0.266 0.722 1.155 sum -20.341 -17.023 6.036 27.202 Atomic orbital electron populations 1.22038 0.91668 1.04461 1.05529 1.20871 0.90667 0.83012 0.75527 1.90801 1.70416 1.30873 1.48849 1.48149 1.06800 1.06445 1.73605 1.21969 0.96988 0.84315 0.99161 1.21947 0.95419 1.01000 0.98859 1.21448 0.94495 0.94109 1.04188 1.21420 0.87245 0.99806 1.02800 0.86846 1.23495 0.90278 0.82733 0.72508 1.90639 1.75684 1.27453 1.45794 1.86658 1.19639 1.35633 1.81702 1.22694 0.77626 0.99705 0.98887 0.87959 1.22175 1.01838 1.03380 0.94849 1.19761 0.82482 0.88139 0.80353 1.90719 1.59986 1.30563 1.57961 1.48073 1.14771 1.12634 1.57588 1.21849 0.98992 0.85738 1.00548 1.19351 0.93235 0.81476 0.93215 1.21381 1.30525 1.09277 0.95721 0.92427 1.24935 0.96587 0.96960 0.95544 1.69920 1.42748 1.23539 1.17018 0.86544 0.79937 0.79278 0.81589 1.20231 1.21132 1.20114 1.21504 0.79551 1.03189 0.96155 0.89927 0.88692 0.88563 0.88702 0.90875 0.91009 0.89729 0.90505 0.90313 0.90597 0.91338 0.89398 0.93318 0.90360 0.92043 0.94646 0.93535 0.92577 0.86870 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.04 10.10 36.01 0.36 -0.68 16 2 C 0.51 5.54 7.80 -10.99 -0.09 5.45 16 3 O -0.53 -8.76 16.52 5.56 0.09 -8.67 16 4 N -0.61 -5.61 2.97 -172.77 -0.51 -6.13 16 5 C 0.10 0.49 6.30 -3.71 -0.02 0.47 16 6 C -0.13 -0.65 6.08 -26.61 -0.16 -0.81 16 7 C -0.10 -0.80 4.46 -26.69 -0.12 -0.91 16 8 C -0.09 -0.96 2.78 -91.65 -0.25 -1.22 16 9 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 10 C 0.47 6.48 7.23 36.01 0.26 6.74 16 11 O -0.51 -7.52 15.20 -18.75 -0.29 -7.81 16 12 O -0.32 -5.47 9.38 -45.76 -0.43 -5.89 16 13 C 0.07 1.18 2.12 -27.88 -0.06 1.12 16 14 H 0.10 1.58 6.26 -51.93 -0.33 1.25 16 15 C -0.17 -2.40 9.15 37.16 0.34 -2.06 16 16 C 0.51 11.17 6.97 -10.99 -0.08 11.09 16 17 O -0.52 -13.81 16.12 -13.66 -0.22 -14.03 16 18 N -0.60 -12.94 2.86 -182.95 -0.52 -13.46 16 19 C 0.07 1.16 9.87 59.85 0.59 1.75 16 20 C 0.25 6.52 5.22 -5.19 -0.03 6.49 16 21 C -0.53 -15.09 9.39 -34.44 -0.32 -15.41 16 22 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 23 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 24 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 25 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 29 C 0.12 1.36 5.65 -3.71 -0.02 1.34 16 30 H 0.08 0.24 5.15 -51.93 -0.27 -0.03 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.25 5.15 -51.93 -0.27 -0.02 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.08 0.61 8.13 -51.93 -0.42 0.19 16 38 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 1.21 6.31 -51.93 -0.33 0.88 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 44 H 0.06 0.81 4.60 -51.93 -0.24 0.57 16 45 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 46 H 0.05 1.40 7.35 -51.93 -0.38 1.01 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 48 H 0.11 1.69 7.00 -51.93 -0.36 1.33 16 49 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 397.51 15.07 5.99 5.99 Total: -1.00 -38.03 397.51 -7.49 -45.53 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -7.63 Total: -1.51 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: 0.31 Total: 15.07 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: -0.30 Total: -45.63 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.84 Total: -36.40 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.03 -7.49 -45.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791848766.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.933 kcal (2) G-P(sol) polarization free energy of solvation -38.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds