Wall clock time and date at job start Tue Mar 31 2020 23:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21278 * 120.00396 * 2 1 4 4 N 1.34775 * 119.99503 * 180.02562 * 2 1 3 5 5 C 1.46926 * 120.63148 * 354.43100 * 4 2 1 6 6 C 1.53197 * 108.77282 * 233.62584 * 5 4 2 7 7 C 1.53043 * 109.31432 * 305.36650 * 6 5 4 8 8 C 1.53042 * 109.53638 * 61.36187 * 7 6 5 9 9 H 1.09002 * 109.49662 * 58.59275 * 8 7 6 10 10 C 1.50700 * 109.52386 * 178.66336 * 8 7 6 11 11 O 1.20829 * 119.99911 * 359.92234 * 10 8 7 12 12 O 1.34222 * 120.00558 * 179.91883 * 10 8 7 13 13 C 1.45196 * 117.00671 * 180.02562 * 12 10 8 14 14 H 1.09005 * 109.46693 * 30.00497 * 13 12 10 15 15 C 1.52998 * 109.47374 * 270.00457 * 13 12 10 16 16 C 1.50699 * 109.47311 * 150.00002 * 13 12 10 17 17 O 1.21279 * 120.00182 * 14.16847 * 16 13 12 18 18 N 1.34776 * 120.00418 * 194.16417 * 16 13 12 19 19 C 1.46508 * 119.99723 * 5.50368 * 18 16 13 20 20 C 1.46493 * 120.00656 * 185.49804 * 18 16 13 21 21 C 1.50706 * 109.47009 * 90.00114 * 20 18 16 22 22 H 1.08006 * 119.99700 * 0.02562 * 21 20 18 23 23 C 1.37871 * 120.00037 * 180.02562 * 21 20 18 24 24 N 1.31516 * 120.00237 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99925 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47207 * 60.00019 * 25 23 21 27 27 H 1.48503 * 109.46891 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.46954 * 299.99810 * 25 23 21 29 29 C 1.46926 * 120.62717 * 174.44886 * 4 2 1 30 30 H 1.08992 * 109.47354 * 182.92039 * 1 2 3 31 31 H 1.09002 * 109.46603 * 302.91915 * 1 2 3 32 32 H 1.09004 * 109.47310 * 62.91649 * 1 2 3 33 33 H 1.08992 * 109.58967 * 353.41739 * 5 4 2 34 34 H 1.08997 * 109.58722 * 113.70458 * 5 4 2 35 35 H 1.09005 * 109.49486 * 65.31600 * 6 5 4 36 36 H 1.08993 * 109.49952 * 185.38158 * 6 5 4 37 37 H 1.08995 * 109.46095 * 301.34282 * 7 6 5 38 38 H 1.08995 * 109.45755 * 181.38473 * 7 6 5 39 39 H 1.09003 * 109.46610 * 305.11550 * 15 13 12 40 40 H 1.08996 * 109.47446 * 65.11141 * 15 13 12 41 41 H 1.09000 * 109.47391 * 185.12052 * 15 13 12 42 42 H 1.09005 * 109.47073 * 93.75545 * 19 18 16 43 43 H 1.08995 * 109.47293 * 213.76280 * 19 18 16 44 44 H 1.08999 * 109.46783 * 333.76045 * 19 18 16 45 45 H 1.08997 * 109.47403 * 210.00534 * 20 18 16 46 46 H 1.08997 * 109.47285 * 330.00542 * 20 18 16 47 47 H 0.96995 * 120.00071 * 179.97438 * 24 23 21 48 48 H 1.09002 * 109.58858 * 6.58576 * 29 4 2 49 49 H 1.09004 * 109.58772 * 246.15677 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.4653 -2.4447 0.1216 6 6 2.0712 -3.2402 1.2822 7 6 3.5794 -3.3827 1.0653 8 6 4.2262 -1.9959 1.0405 9 1 4.0213 -1.4820 1.9796 10 6 5.7156 -2.1380 0.8597 11 8 6.2103 -3.2360 0.7621 12 8 6.4926 -1.0448 0.8070 13 6 7.9181 -1.2571 0.6306 14 1 8.0815 -2.1717 0.0606 15 6 8.5883 -1.3831 2.0002 16 6 8.5117 -0.0888 -0.1135 17 8 7.8774 0.9376 -0.2363 18 7 9.7477 -0.1843 -0.6425 19 6 10.4660 -1.4605 -0.5999 20 6 10.3728 0.9877 -1.2601 21 6 11.1515 1.7492 -0.2185 22 1 11.1783 1.3951 0.8015 23 6 11.8296 2.8977 -0.5676 24 7 11.7973 3.3286 -1.8098 25 14 12.7954 3.8412 0.7235 26 1 13.8478 2.9628 1.2943 27 1 13.4280 5.0301 0.0976 28 1 11.8775 4.2811 1.8047 29 6 3.6448 -1.1864 -0.1228 30 1 -0.3633 -1.0262 0.0524 31 1 -0.3632 0.5585 0.8627 32 1 -0.3634 0.4679 -0.9150 33 1 0.4104 -2.2552 0.3198 34 1 1.5672 -3.0106 -0.8044 35 1 1.8865 -2.7145 2.2191 36 1 1.6141 -4.2287 1.3235 37 1 3.7638 -3.8864 0.1165 38 1 4.0092 -3.9694 1.8772 39 1 8.3490 -0.5075 2.6037 40 1 8.2248 -2.2802 2.5015 41 1 9.6685 -1.4513 1.8713 42 1 10.2891 -2.0081 -1.5257 43 1 11.5337 -1.2729 -0.4870 44 1 10.1094 -2.0501 0.2447 45 1 11.0468 0.6644 -2.0533 46 1 9.6007 1.6325 -1.6799 47 1 12.2741 4.1368 -2.0553 48 1 4.0280 -0.1666 -0.0858 49 1 3.9265 -1.6507 -1.0679 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791848766.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:44 Heat of formation + Delta-G solvation = -174.174399 kcal Electronic energy + Delta-G solvation = -30625.703721 eV Core-core repulsion = 26359.355599 eV Total energy + Delta-G solvation = -4266.348122 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.22576 -41.18930 -40.53893 -38.53142 -37.61108 -36.73479 -34.91009 -34.38631 -33.21299 -32.48625 -30.48952 -29.71930 -27.62995 -26.57121 -26.12976 -25.53350 -24.19873 -22.78870 -21.38381 -20.44666 -20.06563 -19.07232 -18.72274 -18.35669 -18.07527 -17.56918 -17.39268 -16.87928 -16.74408 -16.45824 -16.20347 -16.00942 -15.51486 -15.11189 -14.83442 -14.78053 -14.41238 -14.35386 -14.25217 -14.05535 -13.82169 -13.67316 -13.56615 -13.38137 -13.19360 -13.13085 -13.02828 -12.84906 -12.68529 -12.63363 -12.55572 -12.22279 -12.06450 -11.96492 -11.86660 -11.76996 -11.73377 -11.66069 -10.86156 -10.67306 -10.66743 -9.80143 -9.56411 -8.25484 -6.40763 0.88930 1.21671 1.35379 1.40542 1.46917 1.55302 1.56529 1.93250 2.29728 2.41134 3.04667 3.34804 3.39132 3.44128 3.60805 3.68672 3.77674 3.80931 3.93695 4.00776 4.06780 4.23841 4.35763 4.45706 4.49254 4.55367 4.59028 4.61352 4.61590 4.67451 4.79405 4.83133 4.86338 4.90321 4.95911 5.02753 5.09066 5.16461 5.19883 5.23210 5.34713 5.42240 5.48083 5.75069 6.00129 6.36223 6.44111 6.58252 6.67852 7.11630 7.16292 7.32742 8.82195 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015393 B = 0.002591 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.600614 B =10805.151417 C =11942.264899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.499 3.501 3 O -0.606 6.606 4 N -0.610 5.610 5 C 0.091 3.909 6 C -0.127 4.127 7 C -0.100 4.100 8 C -0.084 4.084 9 H 0.116 0.884 10 C 0.467 3.533 11 O -0.513 6.513 12 O -0.347 6.347 13 C 0.079 3.921 14 H 0.125 0.875 15 C -0.159 4.159 16 C 0.499 3.501 17 O -0.580 6.580 18 N -0.600 5.600 19 C 0.066 3.934 20 C 0.258 3.742 21 C -0.546 4.546 22 H 0.058 0.942 23 C 0.007 3.993 24 N -0.929 5.929 25 Si 0.970 3.030 26 H -0.256 1.256 27 H -0.279 1.279 28 H -0.278 1.278 29 C 0.120 3.880 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.128 0.872 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.031 0.969 46 H -0.003 1.003 47 H 0.268 0.732 48 H 0.066 0.934 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.724 -21.598 7.355 32.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.290 3.710 3 O -0.487 6.487 4 N -0.343 5.343 5 C -0.030 4.030 6 C -0.164 4.164 7 C -0.138 4.138 8 C -0.104 4.104 9 H 0.134 0.866 10 C 0.310 3.690 11 O -0.401 6.401 12 O -0.263 6.263 13 C 0.021 3.979 14 H 0.142 0.858 15 C -0.216 4.216 16 C 0.286 3.714 17 O -0.460 6.460 18 N -0.332 5.332 19 C -0.076 4.076 20 C 0.138 3.862 21 C -0.584 4.584 22 H 0.077 0.923 23 C -0.192 4.192 24 N -0.568 5.568 25 Si 0.794 3.206 26 H -0.180 1.180 27 H -0.204 1.204 28 H -0.204 1.204 29 C -0.004 4.004 30 H 0.138 0.862 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.146 0.854 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.135 0.865 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.114 0.886 45 H 0.049 0.951 46 H 0.015 0.985 47 H 0.077 0.923 48 H 0.084 0.916 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.482 -20.722 7.107 31.390 hybrid contribution 1.225 1.224 0.094 1.735 sum -21.257 -19.497 7.201 29.730 Atomic orbital electron populations 1.22069 0.87220 1.07130 1.06108 1.21911 0.92761 0.82289 0.74019 1.90771 1.72148 1.33495 1.52259 1.48313 1.05736 1.07942 1.72318 1.22379 0.98227 0.82198 1.00154 1.21966 0.93102 1.02700 0.98673 1.21506 0.96400 0.91589 1.04295 1.21534 0.84865 1.01854 1.02179 0.86573 1.24150 0.91149 0.81891 0.71782 1.90617 1.75993 1.27332 1.46170 1.86688 1.19762 1.37649 1.82190 1.22574 0.78145 0.97337 0.99834 0.85796 1.22187 1.02300 1.04078 0.93030 1.20707 0.82085 0.88952 0.79688 1.90682 1.61622 1.33443 1.60237 1.48066 1.15166 1.13275 1.56733 1.22181 0.98597 0.83448 1.03337 1.18850 0.91508 0.82768 0.93115 1.21666 1.30776 1.10021 0.95980 0.92335 1.25896 0.97618 0.97904 0.97780 1.70049 1.43596 1.24095 1.19079 0.85438 0.78636 0.78097 0.78478 1.18047 1.20387 1.20393 1.21251 0.81643 1.00668 0.96872 0.86154 0.87978 0.87992 0.85406 0.89462 0.90790 0.86511 0.90603 0.90002 0.92026 0.88458 0.88299 0.90945 0.90235 0.88641 0.95077 0.98470 0.92314 0.91554 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 10.10 71.24 0.72 -0.87 16 2 C 0.50 10.92 7.80 87.66 0.68 11.61 16 3 O -0.61 -21.55 16.52 -3.02 -0.05 -21.60 16 4 N -0.61 -10.71 2.97 -818.91 -2.43 -13.14 16 5 C 0.09 0.58 6.30 86.36 0.54 1.13 16 6 C -0.13 -0.73 6.08 30.67 0.19 -0.54 16 7 C -0.10 -1.27 4.46 30.62 0.14 -1.14 16 8 C -0.08 -1.73 2.78 -11.46 -0.03 -1.76 16 9 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 10 C 0.47 12.83 7.23 71.24 0.52 13.35 16 11 O -0.51 -14.36 15.20 21.95 0.33 -14.03 16 12 O -0.35 -12.17 9.38 -45.10 -0.42 -12.59 16 13 C 0.08 2.68 2.12 29.85 0.06 2.75 16 14 H 0.12 3.62 6.26 -2.38 -0.01 3.61 16 15 C -0.16 -4.38 9.15 71.98 0.66 -3.72 16 16 C 0.50 22.80 6.97 87.66 0.61 23.41 16 17 O -0.58 -33.28 16.12 15.35 0.25 -33.04 16 18 N -0.60 -26.65 2.86 -851.13 -2.43 -29.08 16 19 C 0.07 2.02 9.87 127.77 1.26 3.28 16 20 C 0.26 14.39 5.22 85.64 0.45 14.84 16 21 C -0.55 -31.92 9.39 25.60 0.24 -31.68 16 22 H 0.06 3.33 7.81 -2.91 -0.02 3.30 16 23 C 0.01 0.42 5.46 84.65 0.46 0.88 16 24 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 25 Si 0.97 45.48 29.54 68.60 2.03 47.51 16 26 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 28 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 29 C 0.12 2.87 5.65 86.36 0.49 3.36 16 30 H 0.12 0.15 5.15 -2.39 -0.01 0.14 16 31 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.13 0.00 5.15 -2.39 -0.01 -0.02 16 34 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 36 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.08 1.01 8.13 -2.39 -0.02 0.99 16 38 H 0.08 1.03 8.07 -2.39 -0.02 1.01 16 39 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 40 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.10 2.49 6.31 -2.39 -0.02 2.47 16 42 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 43 H 0.08 2.44 8.10 -2.39 -0.02 2.42 16 44 H 0.10 2.27 4.60 -2.39 -0.01 2.26 16 45 H 0.03 1.73 8.07 -2.39 -0.02 1.71 16 46 H 0.00 -0.18 7.35 -2.39 -0.02 -0.20 16 47 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 48 H 0.07 2.24 7.00 -2.39 -0.02 2.22 16 49 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -91.20 397.51 5.50 -85.70 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.96 Total: 12.39 kcal Atomic # 6 Polarization: 27.91 SS G_CDS: 6.99 Total: 34.90 kcal Atomic # 7 Polarization: -94.66 SS G_CDS: -4.58 Total: -99.24 kcal Atomic # 8 Polarization: -81.36 SS G_CDS: 0.11 Total: -81.25 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -91.20 5.50 -85.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791848766.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.471 kcal (2) G-P(sol) polarization free energy of solvation -91.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds