Wall clock time and date at job start Tue Mar 31 2020 23:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 116.99912 * 2 1 4 4 O 1.20825 * 120.00077 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99788 * 179.97438 * 3 2 1 6 6 H 1.09007 * 109.90245 * 56.09683 * 5 3 2 7 7 C 1.55072 * 109.91537 * 295.00156 * 5 3 2 8 8 C 1.53141 * 103.09193 * 242.04302 * 7 5 3 9 9 H 1.08997 * 110.47984 * 91.35223 * 8 7 5 10 10 C 1.55474 * 101.65254 * 333.95737 * 8 7 5 11 11 H 1.09007 * 109.82162 * 286.96797 * 10 8 7 12 12 C 1.51688 * 106.93315 * 167.68625 * 10 8 7 13 13 C 1.53870 * 106.98109 * 62.46501 * 12 10 8 14 14 C 1.52598 * 111.22572 * 304.82581 * 13 12 10 15 15 H 1.09002 * 109.03153 * 292.99482 * 14 13 12 16 16 C 1.53002 * 109.03265 * 174.14692 * 14 13 12 17 17 N 1.45537 * 116.30950 * 218.24742 * 8 7 5 18 18 C 1.46899 * 111.00107 * 301.73338 * 17 8 7 19 19 C 1.50701 * 109.46655 * 298.82539 * 18 17 8 20 20 O 1.21280 * 120.00301 * 0.53140 * 19 18 17 21 21 N 1.34774 * 120.00239 * 180.80922 * 19 18 17 22 22 C 1.46500 * 120.00292 * 179.72607 * 21 19 18 23 23 C 1.50709 * 109.47116 * 179.97438 * 22 21 19 24 24 H 1.08001 * 119.99595 * 359.97438 * 23 22 21 25 25 C 1.37880 * 119.99893 * 179.97438 * 23 22 21 26 26 N 1.31509 * 119.99773 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 119.99775 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47116 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.46822 * 120.00114 * 27 25 23 30 30 H 1.48495 * 109.47269 * 239.99823 * 27 25 23 31 31 O 1.43016 * 102.30704 * 42.74256 * 10 8 7 32 32 H 1.09002 * 109.46790 * 300.00226 * 1 2 3 33 33 H 1.08997 * 109.46981 * 59.99917 * 1 2 3 34 34 H 1.09000 * 109.47266 * 179.97438 * 1 2 3 35 35 H 1.08999 * 110.69543 * 123.64167 * 7 5 3 36 36 H 1.09001 * 110.69388 * 0.44403 * 7 5 3 37 37 H 1.08993 * 109.95220 * 181.83417 * 12 10 8 38 38 H 1.08997 * 109.94893 * 303.00812 * 12 10 8 39 39 H 1.09003 * 109.12847 * 65.27214 * 13 12 10 40 40 H 1.08996 * 109.13099 * 184.43445 * 13 12 10 41 41 H 1.09001 * 109.46911 * 290.97352 * 16 14 13 42 42 H 1.09007 * 109.46891 * 50.96994 * 16 14 13 43 43 H 1.08999 * 109.47147 * 170.96773 * 16 14 13 44 44 H 1.08997 * 109.47783 * 178.82780 * 18 17 8 45 45 H 1.09002 * 109.47549 * 58.82101 * 18 17 8 46 46 H 0.97004 * 119.99950 * 359.72340 * 21 19 18 47 47 H 1.09000 * 109.47331 * 299.99781 * 22 21 19 48 48 H 1.08996 * 109.47212 * 59.99913 * 22 21 19 49 49 H 0.97002 * 119.99649 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9672 0.7232 -0.8498 7 6 4.1256 0.6874 1.3223 8 6 4.8394 1.8834 1.9589 9 1 4.1608 2.4268 2.6164 10 6 5.1925 2.7395 0.7100 11 1 6.0056 2.2688 0.1571 12 6 5.6306 4.1005 1.2168 13 6 6.8927 3.8780 2.0684 14 6 6.6388 2.8608 3.1772 15 1 5.9309 3.2822 3.8909 16 6 7.9565 2.5686 3.8976 17 7 6.0909 1.5975 2.6446 18 6 5.8901 0.6162 3.7192 19 6 4.9265 1.1738 4.7349 20 8 4.4461 2.2757 4.5741 21 7 4.6028 0.4502 5.8249 22 6 3.6707 0.9947 6.8153 23 6 3.4786 -0.0046 7.9269 24 1 3.9984 -0.9508 7.8982 25 6 2.6391 0.2891 8.9805 26 7 2.0057 1.4411 9.0151 27 14 2.4004 -0.9498 10.3579 28 1 3.2186 -2.1584 10.0839 29 1 2.8261 -0.3460 11.6461 30 1 0.9671 -1.3297 10.4391 31 8 3.9923 2.6595 -0.0636 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 4.8311 -0.1179 1.1178 36 1 3.3151 0.3376 1.9617 37 1 5.8601 4.7544 0.3755 38 1 4.8421 4.5418 1.8262 39 1 7.6964 3.5148 1.4278 40 1 7.1932 4.8253 2.5159 41 1 8.6213 2.0196 3.2307 42 1 8.4277 3.5077 4.1881 43 1 7.7594 1.9706 4.7873 44 1 6.8445 0.4051 4.2015 45 1 5.4836 -0.3040 3.2997 46 1 4.9870 -0.4311 5.9536 47 1 4.0752 1.9205 7.2245 48 1 2.7114 1.1966 6.3389 49 1 1.4148 1.6476 9.7562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801600747.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:46 Heat of formation + Delta-G solvation = -150.385415 kcal Electronic energy + Delta-G solvation = -31669.557454 eV Core-core repulsion = 27404.240900 eV Total energy + Delta-G solvation = -4265.316554 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.27253 -40.29227 -38.89881 -37.12403 -36.37060 -34.33199 -33.71750 -32.43628 -31.99125 -30.98414 -28.59406 -27.84178 -26.78507 -26.02322 -24.34540 -22.83135 -21.50432 -21.36984 -20.89835 -20.23861 -19.68530 -17.75342 -17.19218 -17.11123 -16.84076 -16.27191 -16.11592 -15.71554 -15.41046 -15.12291 -14.86597 -14.75018 -14.32000 -14.19531 -13.83669 -13.37763 -13.34492 -13.17138 -13.01420 -12.66155 -12.36591 -12.32253 -12.16649 -12.05497 -11.86977 -11.78535 -11.66944 -11.42876 -11.07493 -11.00119 -10.95257 -10.92051 -10.83492 -10.60077 -10.39761 -10.35984 -10.14980 -9.91423 -9.75716 -9.44181 -8.79474 -7.97771 -7.92989 -6.22333 -4.29828 2.06023 2.27078 3.17851 3.19422 3.26566 3.29359 3.49812 3.89250 4.02609 4.32016 4.32413 4.48562 4.60871 4.80388 4.87583 4.96578 4.97597 5.03341 5.07624 5.13996 5.17914 5.28006 5.33764 5.37755 5.39910 5.49175 5.51351 5.58969 5.65101 5.67929 5.75114 5.81368 5.89747 6.08059 6.09631 6.15990 6.19555 6.20097 6.44976 6.56395 6.94597 7.06406 7.22554 7.34749 7.43394 7.59003 7.63665 7.90344 8.51369 8.69676 8.98211 9.37145 10.87773 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009472 B = 0.003607 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.339657 B = 7759.981989 C = 9913.784583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.458 3.542 4 O -0.484 6.484 5 C 0.096 3.904 6 H 0.113 0.887 7 C -0.133 4.133 8 C 0.025 3.975 9 H 0.100 0.900 10 C 0.079 3.921 11 H 0.077 0.923 12 C -0.108 4.108 13 C -0.102 4.102 14 C 0.049 3.951 15 H 0.090 0.910 16 C -0.145 4.145 17 N -0.485 5.485 18 C 0.022 3.978 19 C 0.466 3.534 20 O -0.553 6.553 21 N -0.708 5.708 22 C 0.249 3.751 23 C -0.544 4.544 24 H 0.063 0.937 25 C 0.064 3.936 26 N -0.885 5.885 27 Si 0.903 3.097 28 H -0.271 1.271 29 H -0.282 1.282 30 H -0.282 1.282 31 O -0.342 6.342 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.106 0.894 45 H 0.100 0.900 46 H 0.391 0.609 47 H 0.026 0.974 48 H 0.025 0.975 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.498 -3.184 -18.431 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.274 6.274 3 C 0.299 3.701 4 O -0.369 6.369 5 C 0.036 3.964 6 H 0.130 0.870 7 C -0.171 4.171 8 C -0.084 4.084 9 H 0.117 0.883 10 C 0.021 3.979 11 H 0.095 0.905 12 C -0.146 4.146 13 C -0.139 4.139 14 C -0.059 4.059 15 H 0.107 0.893 16 C -0.202 4.202 17 N -0.209 5.209 18 C -0.110 4.110 19 C 0.250 3.750 20 O -0.434 6.434 21 N -0.356 5.356 22 C 0.128 3.872 23 C -0.583 4.583 24 H 0.082 0.918 25 C -0.140 4.140 26 N -0.522 5.522 27 Si 0.730 3.270 28 H -0.196 1.196 29 H -0.208 1.208 30 H -0.208 1.208 31 O -0.261 6.261 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.124 0.876 45 H 0.118 0.882 46 H 0.223 0.777 47 H 0.044 0.956 48 H 0.043 0.957 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.022 -2.007 -18.872 20.604 hybrid contribution -0.878 -0.894 1.635 2.060 sum 7.143 -2.901 -17.237 18.882 Atomic orbital electron populations 1.23308 0.75802 1.03865 1.02790 1.86460 1.23754 1.32857 1.84354 1.23537 0.91606 0.81776 0.73155 1.90698 1.66640 1.36292 1.43291 1.22453 0.87454 0.85705 1.00766 0.86974 1.22642 1.01061 0.99003 0.94414 1.23255 0.92632 0.95947 0.96575 0.88268 1.22809 0.86985 0.97719 0.90354 0.90535 1.21445 0.98408 0.95048 0.99662 1.21544 0.96902 0.98742 0.96758 1.22117 0.97385 0.89506 0.96876 0.89278 1.21869 0.96560 1.01786 0.99993 1.63024 1.23350 1.10618 1.23863 1.22408 0.99799 0.96964 0.91790 1.21733 0.83361 0.86321 0.83585 1.90546 1.55440 1.20587 1.76790 1.46618 1.46529 1.19865 1.22595 1.19100 0.87799 0.94856 0.85430 1.21255 1.28277 1.02710 1.06015 0.91840 1.24957 0.95172 0.95605 0.98253 1.69982 1.28450 1.21937 1.31853 0.86365 0.78086 0.80962 0.81541 1.19587 1.20758 1.20769 1.88912 1.42270 1.23791 1.71101 0.91553 0.91891 0.87815 0.88257 0.89662 0.90929 0.90630 0.91422 0.90700 0.92026 0.92173 0.92700 0.87641 0.88160 0.77655 0.95605 0.95687 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.37 10.57 -39.26 -0.41 -4.78 16 3 C 0.46 6.58 7.09 36.01 0.26 6.84 16 4 O -0.48 -8.67 16.29 -25.31 -0.41 -9.09 16 5 C 0.10 1.18 3.97 -26.78 -0.11 1.07 16 6 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 7 C -0.13 -1.60 5.44 -25.56 -0.14 -1.74 16 8 C 0.03 0.35 1.67 -67.06 -0.11 0.24 16 9 H 0.10 1.84 5.62 -51.93 -0.29 1.55 16 10 C 0.08 1.01 3.00 -26.08 -0.08 0.94 16 11 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 12 C -0.11 -1.32 6.05 -26.94 -0.16 -1.48 16 13 C -0.10 -1.11 5.23 -26.48 -0.14 -1.25 16 14 C 0.05 0.63 2.02 -67.51 -0.14 0.50 16 15 H 0.09 1.52 5.35 -51.93 -0.28 1.24 16 16 C -0.14 -1.61 8.62 37.16 0.32 -1.29 16 17 N -0.48 -6.17 4.74 -219.20 -1.04 -7.21 16 18 C 0.02 0.28 5.26 -4.98 -0.03 0.26 16 19 C 0.47 8.47 7.22 -10.99 -0.08 8.39 16 20 O -0.55 -12.06 11.42 5.56 0.06 -12.00 16 21 N -0.71 -14.02 5.55 -61.47 -0.34 -14.36 16 22 C 0.25 6.43 5.43 -5.19 -0.03 6.40 16 23 C -0.54 -14.46 9.28 -34.44 -0.32 -14.78 16 24 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 25 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 26 N -0.88 -25.88 13.29 55.43 0.74 -25.15 16 27 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 28 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 29 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 30 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 31 O -0.34 -5.03 10.74 -54.59 -0.59 -5.61 16 32 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.94 7.96 -51.93 -0.41 0.52 16 36 H 0.08 1.14 7.72 -51.93 -0.40 0.74 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 39 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.61 8.12 -51.92 -0.42 0.19 16 43 H 0.05 0.66 6.75 -51.93 -0.35 0.31 16 44 H 0.11 1.17 6.41 -51.93 -0.33 0.84 16 45 H 0.10 1.10 7.23 -51.93 -0.38 0.73 16 46 H 0.39 6.58 8.32 -40.82 -0.34 6.24 16 47 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 386.75 15.07 5.83 5.83 Total: -1.00 -33.85 386.75 -8.77 -42.62 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -7.81 Total: 7.04 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 0.22 Total: 7.16 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.64 Total: -46.72 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -1.35 Total: -31.48 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.85 -8.77 -42.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801600747.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.765 kcal (2) G-P(sol) polarization free energy of solvation -33.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds