Wall clock time and date at job start Tue Mar 31 2020 23:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 116.99912 * 2 1 4 4 O 1.20825 * 120.00077 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99788 * 179.97438 * 3 2 1 6 6 H 1.09007 * 109.90245 * 56.09683 * 5 3 2 7 7 C 1.55072 * 109.91537 * 295.00156 * 5 3 2 8 8 C 1.53141 * 103.09193 * 242.04302 * 7 5 3 9 9 H 1.08997 * 110.47984 * 91.35223 * 8 7 5 10 10 C 1.55474 * 101.65254 * 333.95737 * 8 7 5 11 11 H 1.09007 * 109.82162 * 286.96797 * 10 8 7 12 12 C 1.51688 * 106.93315 * 167.68625 * 10 8 7 13 13 C 1.53870 * 106.98109 * 62.46501 * 12 10 8 14 14 C 1.52598 * 111.22572 * 304.82581 * 13 12 10 15 15 H 1.09002 * 109.03153 * 292.99482 * 14 13 12 16 16 C 1.53002 * 109.03265 * 174.14692 * 14 13 12 17 17 N 1.45537 * 116.30950 * 218.24742 * 8 7 5 18 18 C 1.46899 * 111.00107 * 301.73338 * 17 8 7 19 19 C 1.50701 * 109.46655 * 298.82539 * 18 17 8 20 20 O 1.21280 * 120.00301 * 0.53140 * 19 18 17 21 21 N 1.34774 * 120.00239 * 180.80922 * 19 18 17 22 22 C 1.46500 * 120.00292 * 179.72607 * 21 19 18 23 23 C 1.50709 * 109.47116 * 179.97438 * 22 21 19 24 24 H 1.08001 * 119.99595 * 359.97438 * 23 22 21 25 25 C 1.37880 * 119.99893 * 179.97438 * 23 22 21 26 26 N 1.31509 * 119.99773 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 119.99775 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47116 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.46822 * 120.00114 * 27 25 23 30 30 H 1.48495 * 109.47269 * 239.99823 * 27 25 23 31 31 O 1.43016 * 102.30704 * 42.74256 * 10 8 7 32 32 H 1.09002 * 109.46790 * 300.00226 * 1 2 3 33 33 H 1.08997 * 109.46981 * 59.99917 * 1 2 3 34 34 H 1.09000 * 109.47266 * 179.97438 * 1 2 3 35 35 H 1.08999 * 110.69543 * 123.64167 * 7 5 3 36 36 H 1.09001 * 110.69388 * 0.44403 * 7 5 3 37 37 H 1.08993 * 109.95220 * 181.83417 * 12 10 8 38 38 H 1.08997 * 109.94893 * 303.00812 * 12 10 8 39 39 H 1.09003 * 109.12847 * 65.27214 * 13 12 10 40 40 H 1.08996 * 109.13099 * 184.43445 * 13 12 10 41 41 H 1.09001 * 109.46911 * 290.97352 * 16 14 13 42 42 H 1.09007 * 109.46891 * 50.96994 * 16 14 13 43 43 H 1.08999 * 109.47147 * 170.96773 * 16 14 13 44 44 H 1.08997 * 109.47783 * 178.82780 * 18 17 8 45 45 H 1.09002 * 109.47549 * 58.82101 * 18 17 8 46 46 H 0.97004 * 119.99950 * 359.72340 * 21 19 18 47 47 H 1.09000 * 109.47331 * 299.99781 * 22 21 19 48 48 H 1.08996 * 109.47212 * 59.99913 * 22 21 19 49 49 H 0.97002 * 119.99649 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9672 0.7232 -0.8498 7 6 4.1256 0.6874 1.3223 8 6 4.8394 1.8834 1.9589 9 1 4.1608 2.4268 2.6164 10 6 5.1925 2.7395 0.7100 11 1 6.0056 2.2688 0.1571 12 6 5.6306 4.1005 1.2168 13 6 6.8927 3.8780 2.0684 14 6 6.6388 2.8608 3.1772 15 1 5.9309 3.2822 3.8909 16 6 7.9565 2.5686 3.8976 17 7 6.0909 1.5975 2.6446 18 6 5.8901 0.6162 3.7192 19 6 4.9265 1.1738 4.7349 20 8 4.4461 2.2757 4.5741 21 7 4.6028 0.4502 5.8249 22 6 3.6707 0.9947 6.8153 23 6 3.4786 -0.0046 7.9269 24 1 3.9984 -0.9508 7.8982 25 6 2.6391 0.2891 8.9805 26 7 2.0057 1.4411 9.0151 27 14 2.4004 -0.9498 10.3579 28 1 3.2186 -2.1584 10.0839 29 1 2.8261 -0.3460 11.6461 30 1 0.9671 -1.3297 10.4391 31 8 3.9923 2.6595 -0.0636 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 4.8311 -0.1179 1.1178 36 1 3.3151 0.3376 1.9617 37 1 5.8601 4.7544 0.3755 38 1 4.8421 4.5418 1.8262 39 1 7.6964 3.5148 1.4278 40 1 7.1932 4.8253 2.5159 41 1 8.6213 2.0196 3.2307 42 1 8.4277 3.5077 4.1881 43 1 7.7594 1.9706 4.7873 44 1 6.8445 0.4051 4.2015 45 1 5.4836 -0.3040 3.2997 46 1 4.9870 -0.4311 5.9536 47 1 4.0752 1.9205 7.2245 48 1 2.7114 1.1966 6.3389 49 1 1.4148 1.6476 9.7562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801600747.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:45 Heat of formation + Delta-G solvation = -176.356461 kcal Electronic energy + Delta-G solvation = -31670.683643 eV Core-core repulsion = 27404.240900 eV Total energy + Delta-G solvation = -4266.442743 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.37044 -41.46019 -40.21975 -38.28930 -37.51084 -36.14806 -34.80789 -34.39047 -33.03918 -31.99791 -30.07587 -29.02384 -27.94131 -27.25827 -25.35109 -24.66129 -22.73644 -22.41427 -21.94222 -21.46551 -21.11032 -18.96801 -18.70673 -18.22475 -17.95290 -17.56181 -17.37491 -17.04361 -16.87133 -16.51930 -16.24901 -15.91713 -15.75460 -15.22749 -15.06214 -14.64700 -14.48404 -14.35516 -14.20650 -14.07160 -13.87818 -13.70201 -13.28988 -13.25217 -12.99407 -12.92198 -12.79515 -12.71887 -12.62945 -12.44647 -12.24979 -12.05394 -11.93438 -11.81406 -11.67038 -11.49717 -11.46756 -11.42727 -11.12814 -10.84207 -10.77639 -9.81843 -9.24014 -8.32800 -6.50097 0.94812 1.31615 1.40711 1.41683 1.55396 1.70873 2.30019 2.48541 2.60665 2.85149 3.02384 3.32452 3.51073 3.65094 3.83092 3.90779 3.97581 4.05953 4.11667 4.17207 4.22534 4.24072 4.31522 4.33815 4.51327 4.53710 4.62520 4.64549 4.67968 4.74580 4.81736 4.88971 4.98093 5.02281 5.07035 5.09696 5.15565 5.17570 5.18689 5.26234 5.41650 5.49243 5.56484 5.69291 5.81239 5.89245 5.97994 6.55673 6.62338 6.87833 7.20404 7.48478 8.79424 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009472 B = 0.003607 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.339657 B = 7759.981989 C = 9913.784583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.455 3.545 4 O -0.533 6.533 5 C 0.095 3.905 6 H 0.159 0.841 7 C -0.126 4.126 8 C 0.023 3.977 9 H 0.042 0.958 10 C 0.083 3.917 11 H 0.109 0.891 12 C -0.111 4.111 13 C -0.094 4.094 14 C 0.044 3.956 15 H 0.039 0.961 16 C -0.138 4.138 17 N -0.461 5.461 18 C 0.032 3.968 19 C 0.461 3.539 20 O -0.592 6.592 21 N -0.706 5.706 22 C 0.269 3.731 23 C -0.554 4.554 24 H 0.086 0.914 25 C 0.002 3.998 26 N -0.934 5.934 27 Si 0.985 3.015 28 H -0.249 1.249 29 H -0.279 1.279 30 H -0.280 1.280 31 O -0.371 6.371 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.036 0.964 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.042 0.958 44 H 0.136 0.864 45 H 0.132 0.868 46 H 0.409 0.591 47 H -0.017 1.017 48 H -0.022 1.022 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.397 -6.612 -19.829 23.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.298 3.702 4 O -0.422 6.422 5 C 0.036 3.964 6 H 0.176 0.824 7 C -0.163 4.163 8 C -0.087 4.087 9 H 0.060 0.940 10 C 0.025 3.975 11 H 0.126 0.874 12 C -0.149 4.149 13 C -0.132 4.132 14 C -0.064 4.064 15 H 0.057 0.943 16 C -0.196 4.196 17 N -0.184 5.184 18 C -0.099 4.099 19 C 0.248 3.752 20 O -0.475 6.475 21 N -0.356 5.356 22 C 0.146 3.854 23 C -0.591 4.591 24 H 0.104 0.896 25 C -0.197 4.197 26 N -0.573 5.573 27 Si 0.808 3.192 28 H -0.172 1.172 29 H -0.205 1.205 30 H -0.206 1.206 31 O -0.290 6.290 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.055 0.945 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.154 0.846 45 H 0.150 0.850 46 H 0.245 0.755 47 H 0.001 0.999 48 H -0.004 1.004 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.963 -5.483 -20.302 23.716 hybrid contribution -1.850 0.260 2.023 2.754 sum 9.113 -5.223 -18.279 21.082 Atomic orbital electron populations 1.23594 0.74579 1.06102 1.02254 1.86460 1.25009 1.31664 1.83653 1.24191 0.92733 0.81598 0.71683 1.90677 1.67840 1.37891 1.45768 1.22805 0.85926 0.85135 1.02489 0.82389 1.22652 1.00939 0.99103 0.93650 1.23109 0.92218 0.96882 0.96488 0.93967 1.22946 0.87242 0.97612 0.89668 0.87367 1.21497 0.98023 0.95445 0.99949 1.21521 0.96795 0.98616 0.96235 1.22134 0.97285 0.89985 0.96954 0.94298 1.21834 0.95593 1.02451 0.99699 1.63149 1.21941 1.10347 1.22935 1.22626 0.99423 0.97614 0.90241 1.22922 0.83241 0.85506 0.83559 1.90586 1.56783 1.22666 1.77458 1.46352 1.46105 1.20897 1.22269 1.18443 0.86721 0.93767 0.86469 1.21669 1.28235 1.03336 1.05899 0.89567 1.26096 0.94614 0.97632 1.01360 1.70157 1.29499 1.24564 1.33049 0.85112 0.78160 0.78587 0.77385 1.17250 1.20498 1.20600 1.88889 1.43254 1.25538 1.71312 0.93297 0.91341 0.84142 0.84121 0.91753 0.89001 0.94477 0.88447 0.90019 0.89426 0.91420 0.93891 0.84616 0.85008 0.75534 0.99943 1.00357 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.73 16 2 O -0.35 -8.35 10.57 -51.44 -0.54 -8.90 16 3 C 0.45 13.16 7.09 71.24 0.51 13.66 16 4 O -0.53 -20.12 16.29 28.24 0.46 -19.66 16 5 C 0.10 2.19 3.97 30.56 0.12 2.32 16 6 H 0.16 2.21 8.14 -2.38 -0.02 2.19 16 7 C -0.13 -2.80 5.44 31.35 0.17 -2.63 16 8 C 0.02 0.63 1.67 46.07 0.08 0.71 16 9 H 0.04 1.70 5.62 -2.39 -0.01 1.69 16 10 C 0.08 2.01 3.00 31.01 0.09 2.11 16 11 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 12 C -0.11 -2.72 6.05 30.46 0.18 -2.53 16 13 C -0.09 -1.92 5.23 30.75 0.16 -1.76 16 14 C 0.04 1.13 2.02 44.64 0.09 1.22 16 15 H 0.04 1.42 5.35 -2.39 -0.01 1.41 16 16 C -0.14 -2.76 8.62 71.98 0.62 -2.14 16 17 N -0.46 -10.83 4.74 -847.42 -4.02 -14.85 16 18 C 0.03 0.76 5.26 85.56 0.45 1.21 16 19 C 0.46 17.25 7.22 87.66 0.63 17.88 16 20 O -0.59 -28.05 11.42 -3.03 -0.03 -28.08 16 21 N -0.71 -28.64 5.55 -466.78 -2.59 -31.23 16 22 C 0.27 14.76 5.43 85.64 0.46 15.23 16 23 C -0.55 -29.89 9.28 25.60 0.24 -29.65 16 24 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 25 C 0.00 0.13 5.46 84.66 0.46 0.59 16 26 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 27 Si 0.98 42.12 29.54 68.60 2.03 44.15 16 28 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 29 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 30 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 31 O -0.37 -10.74 10.74 -130.47 -1.40 -12.14 16 32 H 0.05 1.11 8.13 -2.39 -0.02 1.09 16 33 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 34 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.14 1.97 7.96 -2.39 -0.02 1.95 16 36 H 0.06 1.71 7.72 -2.39 -0.02 1.69 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.04 1.16 8.10 -2.39 -0.02 1.14 16 39 H 0.10 1.47 8.13 -2.39 -0.02 1.45 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.07 1.25 8.12 -2.38 -0.02 1.23 16 43 H 0.04 0.95 6.75 -2.39 -0.02 0.94 16 44 H 0.14 2.50 6.41 -2.39 -0.02 2.48 16 45 H 0.13 2.37 7.23 -2.39 -0.02 2.35 16 46 H 0.41 13.36 8.32 -92.71 -0.77 12.59 16 47 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 48 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 49 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -82.72 386.75 -0.16 -82.88 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 0.19 Total: 26.59 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 5.47 Total: 17.94 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -6.32 Total: -102.78 kcal Atomic # 8 Polarization: -67.26 SS G_CDS: -1.52 Total: -68.78 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -82.72 -0.16 -82.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801600747.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.480 kcal (2) G-P(sol) polarization free energy of solvation -82.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds