Wall clock time and date at job start Tue Mar 31 2020 23:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47250 * 2 1 4 4 O 1.45198 * 109.47535 * 120.00631 * 2 1 3 5 5 C 1.34539 * 116.99436 * 269.99959 * 4 2 1 6 6 O 1.21252 * 120.00346 * 359.97438 * 5 4 2 7 7 C 1.49435 * 119.99738 * 179.97438 * 5 4 2 8 8 O 1.21352 * 119.99912 * 353.66364 * 7 5 4 9 9 N 1.34772 * 120.00355 * 173.66448 * 7 5 4 10 10 C 1.46926 * 120.62763 * 350.93843 * 9 7 5 11 11 C 1.52761 * 109.00903 * 233.58747 * 10 9 7 12 12 C 1.53042 * 109.38176 * 305.58704 * 11 10 9 13 13 C 1.53037 * 109.53843 * 61.24036 * 12 11 10 14 14 H 1.09001 * 109.49870 * 58.58400 * 13 12 11 15 15 C 1.53004 * 109.49849 * 178.68170 * 13 12 11 16 16 C 1.46929 * 120.63676 * 171.22324 * 9 7 5 17 17 C 1.50708 * 109.46949 * 240.00475 * 2 1 3 18 18 O 1.21281 * 119.99654 * 257.54290 * 17 2 1 19 19 N 1.34777 * 119.99850 * 77.53470 * 17 2 1 20 20 C 1.46500 * 120.00325 * 5.38551 * 19 17 2 21 21 C 1.46501 * 119.99803 * 185.38230 * 19 17 2 22 22 C 1.50703 * 109.47195 * 90.00178 * 21 19 17 23 23 H 1.07994 * 119.99704 * 0.02562 * 22 21 19 24 24 C 1.37877 * 119.99826 * 179.97438 * 22 21 19 25 25 N 1.31515 * 119.99853 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 120.00088 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47481 * 89.99921 * 26 24 22 28 28 H 1.48504 * 109.47102 * 209.99609 * 26 24 22 29 29 H 1.48497 * 109.47114 * 329.99727 * 26 24 22 30 30 H 1.09005 * 109.47228 * 55.12491 * 1 2 3 31 31 H 1.08996 * 109.47217 * 175.12517 * 1 2 3 32 32 H 1.09002 * 109.47193 * 295.12495 * 1 2 3 33 33 H 1.09000 * 109.58513 * 353.41937 * 10 9 7 34 34 H 1.08999 * 109.59072 * 113.84601 * 10 9 7 35 35 H 1.09001 * 109.56744 * 185.55607 * 11 10 9 36 36 H 1.08999 * 109.36272 * 65.49768 * 11 10 9 37 37 H 1.09002 * 109.46270 * 301.21712 * 12 11 10 38 38 H 1.08998 * 109.46255 * 181.26363 * 12 11 10 39 39 H 1.09001 * 109.47116 * 179.83773 * 15 13 12 40 40 H 1.08998 * 109.47496 * 299.84234 * 15 13 12 41 41 H 1.09007 * 109.46856 * 59.84077 * 15 13 12 42 42 H 1.09003 * 109.58091 * 246.15781 * 16 9 7 43 43 H 1.09001 * 109.57990 * 6.43081 * 16 9 7 44 44 H 1.09000 * 109.46764 * 92.52735 * 20 19 17 45 45 H 1.08999 * 109.46820 * 212.53200 * 20 19 17 46 46 H 1.09002 * 109.46589 * 332.52860 * 20 19 17 47 47 H 1.09001 * 109.47056 * 210.00524 * 21 19 17 48 48 H 1.09001 * 109.47098 * 330.00329 * 21 19 17 49 49 H 0.96998 * 120.00304 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0141 -0.6846 1.1854 5 6 2.2177 0.0656 2.2835 6 8 1.9980 1.2577 2.2527 7 6 2.7147 -0.5703 3.5412 8 8 2.8251 -1.7769 3.6084 9 7 3.0403 0.1962 4.6008 10 6 3.1027 1.6588 4.4757 11 6 4.4656 2.1425 4.9678 12 6 4.7075 1.6218 6.3864 13 6 4.7110 0.0915 6.3762 14 1 5.4870 -0.2661 5.6994 15 6 4.9856 -0.4280 7.7889 16 6 3.3455 -0.4151 5.9016 17 6 2.0323 -0.7103 -1.2306 18 8 2.4480 -1.8467 -1.1476 19 7 2.0194 -0.0829 -2.4233 20 6 1.6288 1.3267 -2.5053 21 6 2.3959 -0.8105 -3.6378 22 6 1.1708 -1.4462 -4.2428 23 1 0.2079 -1.3204 -3.7702 24 6 1.2790 -2.1874 -5.4003 25 7 0.2099 -2.7426 -5.9280 26 14 2.9444 -2.4043 -6.2182 27 1 3.6087 -3.6162 -5.6749 28 1 2.7600 -2.5561 -7.6840 29 1 3.7883 -1.2132 -5.9462 30 1 -0.3634 0.5876 -0.8431 31 1 -0.3633 -1.0239 -0.0873 32 1 -0.3634 0.4363 0.9304 33 1 2.9712 1.9421 3.4314 34 1 2.3172 2.1113 5.0809 35 1 4.4866 3.2323 4.9719 36 1 5.2440 1.7657 4.3043 37 1 3.9152 1.9788 7.0444 38 1 5.6699 1.9847 6.7473 39 1 4.9851 -1.5180 7.7817 40 1 5.9572 -0.0673 8.1263 41 1 4.2098 -0.0688 8.4653 42 1 2.5801 -0.1353 6.6254 43 1 3.3715 -1.4999 5.7982 44 1 2.5171 1.9545 -2.4343 45 1 1.1290 1.5105 -3.4564 46 1 0.9499 1.5638 -1.6862 47 1 2.8372 -0.1176 -4.3543 48 1 3.1210 -1.5849 -3.3874 49 1 0.2861 -3.2644 -6.7421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805564063.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:06 Heat of formation + Delta-G solvation = -131.245895 kcal Electronic energy + Delta-G solvation = -30521.529698 eV Core-core repulsion = 26257.043095 eV Total energy + Delta-G solvation = -4264.486602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.51890 -40.11525 -38.99624 -38.06859 -36.87964 -35.05366 -34.11644 -32.80336 -32.33006 -31.77997 -28.46920 -27.84139 -26.73783 -26.21784 -25.03909 -23.80275 -22.74474 -22.01398 -20.92867 -20.07629 -18.93091 -18.15746 -17.52951 -17.00360 -16.94760 -16.47673 -16.37174 -15.71364 -15.45284 -15.20574 -14.83886 -14.69222 -14.61119 -14.21024 -14.01118 -13.63832 -13.51115 -13.28035 -13.17245 -12.99168 -12.59065 -12.44342 -12.37643 -12.31285 -12.27001 -11.99497 -11.84927 -11.62630 -11.54458 -11.52866 -11.28944 -11.07301 -10.96222 -10.87326 -10.80818 -10.54736 -10.18654 -9.80856 -9.58551 -9.15367 -9.09051 -8.61909 -7.83256 -6.11930 -4.11670 0.86620 1.53878 2.70478 2.95825 3.09239 3.28200 3.34025 3.36612 3.63747 4.14752 4.25255 4.33276 4.37262 4.41054 4.58096 4.65122 4.82720 4.84931 4.93625 4.95698 5.07476 5.12769 5.21330 5.24011 5.29358 5.34623 5.37388 5.41333 5.51896 5.60143 5.60359 5.64935 5.68817 5.71585 5.74727 5.90721 5.94809 6.02554 6.16167 6.19962 6.60077 6.66619 6.87977 7.07371 7.21067 7.55062 7.56720 8.04983 8.41196 8.75965 8.90655 9.47537 11.01115 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023112 B = 0.002274 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.203890 B =12309.945607 C =12543.338378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.067 3.933 3 H 0.108 0.892 4 O -0.293 6.293 5 C 0.461 3.539 6 O -0.481 6.481 7 C 0.533 3.467 8 O -0.482 6.482 9 N -0.583 5.583 10 C 0.068 3.932 11 C -0.137 4.137 12 C -0.117 4.117 13 C -0.108 4.108 14 H 0.077 0.923 15 C -0.145 4.145 16 C 0.115 3.885 17 C 0.512 3.488 18 O -0.513 6.513 19 N -0.591 5.591 20 C 0.073 3.927 21 C 0.216 3.784 22 C -0.533 4.533 23 H 0.076 0.924 24 C 0.073 3.927 25 N -0.895 5.895 26 Si 0.876 3.124 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.266 1.266 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.135 0.865 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.050 0.950 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.034 0.966 48 H 0.040 0.960 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.716 14.370 25.614 30.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.009 3.991 3 H 0.125 0.875 4 O -0.205 6.205 5 C 0.301 3.699 6 O -0.371 6.371 7 C 0.315 3.685 8 O -0.355 6.355 9 N -0.319 5.319 10 C -0.054 4.054 11 C -0.175 4.175 12 C -0.154 4.154 13 C -0.127 4.127 14 H 0.096 0.904 15 C -0.203 4.203 16 C -0.006 4.006 17 C 0.296 3.704 18 O -0.388 6.388 19 N -0.325 5.325 20 C -0.071 4.071 21 C 0.096 3.904 22 C -0.571 4.571 23 H 0.094 0.906 24 C -0.129 4.129 25 N -0.533 5.533 26 Si 0.703 3.297 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.190 1.190 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.152 0.848 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.116 0.884 44 H 0.069 0.931 45 H 0.100 0.900 46 H 0.082 0.918 47 H 0.052 0.948 48 H 0.058 0.942 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.846 13.300 25.432 29.505 hybrid contribution 0.613 0.122 -0.579 0.852 sum 7.459 13.422 24.853 29.214 Atomic orbital electron populations 1.22165 0.91262 1.05022 1.03684 1.22886 0.96704 0.97339 0.82172 0.87479 1.86787 1.74707 1.40267 1.18762 1.23568 0.75263 0.85283 0.85828 1.90541 1.46929 1.15824 1.83759 1.18786 0.80099 0.86750 0.82869 1.90849 1.49930 1.13415 1.81290 1.47847 1.66553 1.08129 1.09344 1.22764 0.97477 0.77785 1.07325 1.21890 0.97419 1.01247 0.96954 1.21629 1.02275 0.94639 0.96886 1.21521 0.97183 0.96099 0.97921 0.90425 1.21764 1.01911 1.01414 0.95197 1.21873 0.96495 0.99925 0.82347 1.19680 0.80100 0.86951 0.83676 1.90733 1.45381 1.17600 1.85071 1.47737 1.66252 1.11207 1.07268 1.21868 0.99643 0.81900 1.03669 1.19747 0.97339 0.92459 0.80858 1.21301 0.94509 1.32197 1.09135 0.90610 1.24850 0.96618 0.94755 0.96723 1.69889 1.28586 1.33785 1.21044 0.86848 0.84598 0.79483 0.78757 1.19803 1.21014 1.19045 0.89150 0.90168 0.91122 0.84758 0.90879 0.90170 0.91462 0.91573 0.91462 0.92160 0.92113 0.92368 0.90603 0.88439 0.93149 0.89968 0.91837 0.94773 0.94226 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.29 37.16 0.35 -1.96 16 2 C 0.07 1.09 2.12 -27.88 -0.06 1.03 16 3 H 0.11 1.45 6.09 -51.93 -0.32 1.14 16 4 O -0.29 -5.10 9.35 -48.95 -0.46 -5.56 16 5 C 0.46 6.60 7.85 35.40 0.28 6.88 16 6 O -0.48 -6.20 12.44 -19.07 -0.24 -6.44 16 7 C 0.53 7.30 7.73 -11.59 -0.09 7.21 16 8 O -0.48 -8.12 16.40 -7.56 -0.12 -8.24 16 9 N -0.58 -5.89 2.98 -173.55 -0.52 -6.40 16 10 C 0.07 0.54 5.95 -3.93 -0.02 0.52 16 11 C -0.14 -0.87 6.06 -26.83 -0.16 -1.03 16 12 C -0.12 -0.64 5.17 -26.69 -0.14 -0.77 16 13 C -0.11 -0.69 2.87 -90.50 -0.26 -0.95 16 14 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 15 C -0.15 -0.71 9.20 37.16 0.34 -0.37 16 16 C 0.11 0.92 5.73 -3.71 -0.02 0.90 16 17 C 0.51 10.77 6.94 -10.98 -0.08 10.70 16 18 O -0.51 -13.26 16.15 -13.42 -0.22 -13.47 16 19 N -0.59 -12.04 2.86 -182.95 -0.52 -12.56 16 20 C 0.07 1.06 10.01 59.85 0.60 1.66 16 21 C 0.22 5.23 4.28 -5.19 -0.02 5.21 16 22 C -0.53 -15.09 9.94 -34.44 -0.34 -15.43 16 23 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 24 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 25 N -0.89 -27.35 13.96 55.43 0.77 -26.58 16 26 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 27 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 30 H 0.09 1.15 6.50 -51.93 -0.34 0.81 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.14 1.28 4.33 -54.71 -0.24 1.04 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.10 0.91 7.01 -51.93 -0.36 0.55 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.08 1.22 8.09 -51.93 -0.42 0.80 16 46 H 0.06 0.76 4.68 -51.93 -0.24 0.51 16 47 H 0.03 0.78 7.13 -51.93 -0.37 0.41 16 48 H 0.04 1.03 6.78 -51.93 -0.35 0.68 16 49 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 393.80 15.07 5.93 5.93 Total: -1.00 -35.68 393.80 -7.49 -43.18 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -7.73 Total: -2.25 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: 0.27 Total: 15.61 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -0.27 Total: -45.55 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -1.04 Total: -33.72 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.68 -7.49 -43.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805564063.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.071 kcal (2) G-P(sol) polarization free energy of solvation -35.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds