Wall clock time and date at job start Wed Apr 1 2020 00:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47181 * 2 1 4 4 C 1.46501 * 119.99772 * 269.99556 * 3 2 1 5 5 C 1.50700 * 109.47163 * 269.99905 * 4 3 2 6 6 H 1.08000 * 119.99707 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99781 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99793 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00251 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47300 * 89.99205 * 9 7 5 11 11 H 1.48504 * 109.46753 * 209.99713 * 9 7 5 12 12 H 1.48499 * 109.46608 * 329.99343 * 9 7 5 13 13 C 1.34772 * 120.00012 * 89.99400 * 3 2 1 14 14 O 1.21281 * 119.99778 * 179.97438 * 13 3 2 15 15 C 1.50697 * 120.00161 * 0.02562 * 13 3 2 16 16 O 1.45199 * 109.47166 * 179.97438 * 15 13 3 17 17 C 1.34543 * 117.00057 * 180.02562 * 16 15 13 18 18 O 1.21252 * 119.99903 * 0.02562 * 17 16 15 19 19 C 1.49438 * 119.99712 * 180.02562 * 17 16 15 20 20 O 1.21345 * 120.00072 * 353.75949 * 19 17 16 21 21 N 1.34781 * 119.99562 * 173.76583 * 19 17 16 22 22 C 1.46926 * 120.63087 * 354.17064 * 21 19 17 23 23 C 1.53626 * 108.54214 * 126.37230 * 22 21 19 24 24 C 1.53043 * 109.24199 * 54.85585 * 23 22 21 25 25 C 1.52999 * 109.44651 * 178.49497 * 24 23 22 26 26 C 1.53037 * 109.53531 * 298.50976 * 24 23 22 27 27 C 1.46929 * 120.62800 * 174.45312 * 21 19 17 28 28 H 1.09003 * 109.46800 * 60.00731 * 1 2 3 29 29 H 1.09000 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47244 * 300.00556 * 1 2 3 31 31 H 1.08997 * 109.47662 * 239.99297 * 2 1 3 32 32 H 1.09007 * 109.47244 * 119.99463 * 2 1 3 33 33 H 1.09002 * 109.46969 * 29.99653 * 4 3 2 34 34 H 1.08998 * 109.47141 * 150.00102 * 4 3 2 35 35 H 0.97000 * 119.99867 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.47493 * 59.99916 * 15 13 3 37 37 H 1.08997 * 109.47413 * 299.99641 * 15 13 3 38 38 H 1.08999 * 109.58607 * 246.20512 * 22 21 19 39 39 H 1.09001 * 109.58708 * 6.62993 * 22 21 19 40 40 H 1.08996 * 109.62891 * 294.86358 * 23 22 21 41 41 H 1.09000 * 109.42890 * 174.72123 * 23 22 21 42 42 H 1.08995 * 109.45937 * 58.53179 * 24 23 22 43 43 H 1.08999 * 109.47231 * 180.02562 * 25 24 23 44 44 H 1.08996 * 109.47610 * 300.06212 * 25 24 23 45 45 H 1.09006 * 109.46607 * 60.06586 * 25 24 23 46 46 H 1.08999 * 109.50044 * 301.41313 * 26 24 23 47 47 H 1.09004 * 109.49813 * 181.31277 * 26 24 23 48 48 H 1.08999 * 109.58731 * 353.37011 * 27 21 19 49 49 H 1.09006 * 109.58592 * 113.65381 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0960 7 6 4.1492 2.3895 -2.8779 8 7 5.3915 2.1833 -3.2572 9 14 3.0130 3.4350 -3.9293 10 1 3.1163 4.8552 -3.5083 11 1 3.4061 3.3116 -5.3561 12 1 1.6133 2.9688 -3.7594 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1671 15 6 1.9921 1.3061 2.4723 16 8 2.3070 2.1956 3.5759 17 6 2.1365 1.7105 4.8191 18 8 1.7367 0.5768 4.9780 19 6 2.4399 2.5689 6.0042 20 8 2.9460 3.6607 5.8489 21 7 2.1513 2.1302 7.2455 22 6 1.4241 0.8690 7.4436 23 6 2.2383 -0.0200 8.3959 24 6 2.5217 0.7512 9.6871 25 6 3.3003 -0.1431 10.6541 26 6 3.3492 1.9982 9.3673 27 6 2.5526 2.9073 8.4262 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1385 35 1 5.7176 2.5737 -4.0832 36 1 2.6226 0.4188 2.5300 37 1 0.9443 1.0116 2.5302 38 1 0.4462 1.0754 7.8785 39 1 1.3010 0.3638 6.4856 40 1 3.1806 -0.2965 7.9229 41 1 1.6689 -0.9202 8.6273 42 1 1.5792 1.0488 10.1466 43 1 3.5019 0.4056 11.5741 44 1 2.7111 -1.0313 10.8820 45 1 4.2431 -0.4404 10.1949 46 1 4.2811 1.7027 8.8852 47 1 3.5705 2.5345 10.2901 48 1 3.1743 3.7474 8.1167 49 1 1.6648 3.2787 8.9382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805566647.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:04 Heat of formation + Delta-G solvation = -153.520766 kcal Electronic energy + Delta-G solvation = -30160.559953 eV Core-core repulsion = 25895.107440 eV Total energy + Delta-G solvation = -4265.452513 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.54319 -41.14570 -40.37228 -38.98840 -38.01204 -37.07659 -34.99102 -34.88640 -32.16769 -32.07395 -30.94013 -29.66307 -28.90609 -26.63973 -24.54561 -24.42793 -24.21884 -23.54479 -22.04850 -20.72020 -20.20598 -19.30082 -19.14539 -18.67571 -18.22642 -17.75737 -17.68235 -17.08366 -16.70310 -16.21949 -16.07031 -15.64907 -15.44951 -15.17054 -15.13768 -14.77445 -14.66983 -14.56555 -14.38927 -14.13875 -14.08367 -13.90310 -13.75046 -13.41674 -13.18946 -12.82307 -12.77019 -12.64991 -12.56458 -12.44395 -12.23968 -12.19250 -12.03625 -11.91987 -11.84271 -11.75196 -11.56395 -11.34725 -10.87031 -10.83467 -10.50797 -9.95562 -9.54840 -8.34775 -6.40317 -0.21922 0.48042 1.32262 1.37549 1.44886 1.53121 1.66641 1.88857 2.30434 2.41039 2.99239 3.04818 3.32379 3.72871 3.80820 3.82628 3.87268 3.89973 4.06874 4.13804 4.29572 4.30567 4.37699 4.48419 4.59648 4.62377 4.71471 4.75159 4.76328 4.85748 4.89178 4.90625 4.97366 5.00781 5.05632 5.06822 5.14412 5.22402 5.36565 5.37415 5.38975 5.44557 5.52651 5.55718 5.83895 6.07724 6.20891 6.50846 6.57701 6.61275 7.13774 7.27207 8.82022 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021355 B = 0.002216 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.833282 B =12633.457474 C =13150.998570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.091 3.909 3 N -0.590 5.590 4 C 0.226 3.774 5 C -0.538 4.538 6 H 0.030 0.970 7 C 0.009 3.991 8 N -0.944 5.944 9 Si 0.948 3.052 10 H -0.279 1.279 11 H -0.274 1.274 12 H -0.234 1.234 13 C 0.498 3.502 14 O -0.577 6.577 15 C 0.056 3.944 16 O -0.328 6.328 17 C 0.468 3.532 18 O -0.463 6.463 19 C 0.527 3.473 20 O -0.530 6.530 21 N -0.566 5.566 22 C 0.041 3.959 23 C -0.122 4.122 24 C -0.093 4.093 25 C -0.145 4.145 26 C -0.125 4.125 27 C 0.104 3.896 28 H 0.050 0.950 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.019 0.981 35 H 0.268 0.732 36 H 0.127 0.873 37 H 0.142 0.858 38 H 0.092 0.908 39 H 0.142 0.858 40 H 0.052 0.948 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.046 0.954 46 H 0.054 0.946 47 H 0.099 0.901 48 H 0.079 0.921 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.422 -9.568 27.692 32.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.031 4.031 3 N -0.323 5.323 4 C 0.104 3.896 5 C -0.576 4.576 6 H 0.048 0.952 7 C -0.189 4.189 8 N -0.584 5.584 9 Si 0.770 3.230 10 H -0.205 1.205 11 H -0.199 1.199 12 H -0.157 1.157 13 C 0.285 3.715 14 O -0.456 6.456 15 C -0.020 4.020 16 O -0.241 6.241 17 C 0.307 3.693 18 O -0.351 6.351 19 C 0.309 3.691 20 O -0.407 6.407 21 N -0.300 5.300 22 C -0.079 4.079 23 C -0.160 4.160 24 C -0.112 4.112 25 C -0.202 4.202 26 C -0.163 4.163 27 C -0.017 4.017 28 H 0.069 0.931 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.145 0.855 37 H 0.160 0.840 38 H 0.110 0.890 39 H 0.159 0.841 40 H 0.071 0.929 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.117 0.883 48 H 0.098 0.902 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.949 -8.730 27.461 32.013 hybrid contribution 0.541 0.591 -0.994 1.277 sum -13.408 -8.139 26.467 30.765 Atomic orbital electron populations 1.22190 0.93522 1.04044 1.02339 1.21948 0.95998 0.80470 1.04667 1.47969 1.63777 1.15462 1.05053 1.19387 0.95118 0.93130 0.81986 1.21547 0.97058 1.32289 1.06741 0.95183 1.25872 0.96776 0.97176 0.99037 1.70052 1.17397 1.46487 1.24487 0.85719 0.80621 0.78879 0.77758 1.20485 1.19946 1.15682 1.20543 0.78277 0.86695 0.85992 1.90722 1.46751 1.20426 1.87703 1.23137 1.05981 0.91804 0.81077 1.86707 1.77485 1.45429 1.14458 1.23675 0.74711 0.86321 0.84603 1.90390 1.41110 1.19126 1.84469 1.18843 0.81081 0.85555 0.83653 1.90838 1.43436 1.21271 1.85115 1.48110 1.53957 1.24684 1.03280 1.23516 0.95135 0.82905 1.06327 1.22004 1.00321 0.98702 0.95010 1.21189 0.99673 0.94758 0.95534 1.21798 0.99895 0.99686 0.98838 1.21999 0.98167 0.96630 0.99507 1.22037 1.01037 0.94490 0.84109 0.93086 0.88325 0.91998 0.90016 0.88391 0.92372 0.96311 0.92256 0.85492 0.84021 0.89006 0.84120 0.92870 0.88629 0.89484 0.91896 0.91802 0.93488 0.92757 0.88292 0.90238 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 10.24 71.98 0.74 -2.47 16 2 C 0.09 2.44 5.93 86.38 0.51 2.95 16 3 N -0.59 -23.39 2.46 -826.15 -2.03 -25.42 16 4 C 0.23 10.89 4.23 85.63 0.36 11.25 16 5 C -0.54 -31.70 9.94 25.60 0.25 -31.45 16 6 H 0.03 1.98 8.06 -2.91 -0.02 1.95 16 7 C 0.01 0.56 5.47 84.65 0.46 1.03 16 8 N -0.94 -60.18 13.96 21.45 0.30 -59.88 16 9 Si 0.95 44.62 27.47 68.60 1.88 46.50 16 10 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.23 -9.72 6.54 99.48 0.65 -9.07 16 13 C 0.50 20.68 7.75 87.66 0.68 21.36 16 14 O -0.58 -30.93 16.08 15.77 0.25 -30.67 16 15 C 0.06 1.64 4.50 71.23 0.32 1.96 16 16 O -0.33 -11.24 9.63 -45.89 -0.44 -11.68 16 17 C 0.47 12.84 7.92 70.84 0.56 13.40 16 18 O -0.46 -10.66 12.87 20.63 0.27 -10.40 16 19 C 0.53 14.48 7.75 87.26 0.68 15.16 16 20 O -0.53 -18.85 16.41 9.25 0.15 -18.69 16 21 N -0.57 -10.77 2.97 -819.64 -2.43 -13.20 16 22 C 0.04 0.55 6.31 86.51 0.55 1.10 16 23 C -0.12 -1.31 5.38 30.82 0.17 -1.14 16 24 C -0.09 -0.79 2.68 -10.77 -0.03 -0.82 16 25 C -0.14 -1.08 9.19 71.98 0.66 -0.42 16 26 C -0.13 -1.35 5.36 30.67 0.16 -1.19 16 27 C 0.10 1.52 6.41 86.36 0.55 2.08 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 1.10 7.22 -2.39 -0.02 1.09 16 31 H 0.08 2.36 8.07 -2.39 -0.02 2.34 16 32 H 0.10 2.04 6.44 -2.38 -0.02 2.02 16 33 H 0.06 2.52 7.13 -2.39 -0.02 2.51 16 34 H 0.02 0.99 6.85 -2.39 -0.02 0.97 16 35 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 36 H 0.13 3.09 7.40 -2.38 -0.02 3.08 16 37 H 0.14 2.95 7.18 -2.39 -0.02 2.94 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.14 2.32 3.74 -81.42 -0.30 2.01 16 40 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 46 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.08 1.50 7.04 -2.39 -0.02 1.48 16 49 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -84.82 396.79 5.18 -79.64 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.60 Total: 10.98 kcal Atomic # 6 Polarization: 26.18 SS G_CDS: 6.63 Total: 32.81 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -4.16 Total: -98.49 kcal Atomic # 8 Polarization: -71.67 SS G_CDS: 0.23 Total: -71.44 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.50 kcal Total: -84.82 5.18 -79.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805566647.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.877 kcal (2) G-P(sol) polarization free energy of solvation -84.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds