Wall clock time and date at job start Tue Mar 31 2020 23:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 109.46463 * 2 1 4 4 C 1.50699 * 109.46796 * 119.99509 * 2 1 3 5 5 C 1.38234 * 119.98137 * 99.73349 * 4 2 1 6 6 C 1.38189 * 120.04198 * 179.72053 * 5 4 2 7 7 C 1.38490 * 120.03026 * 0.55123 * 6 5 4 8 8 F 1.35102 * 120.01217 * 179.74707 * 7 6 5 9 9 C 1.38391 * 119.97494 * 359.72161 * 7 6 5 10 10 C 1.38448 * 119.98931 * 279.99960 * 4 2 1 11 11 F 1.35096 * 120.01434 * 0.03131 * 10 4 2 12 12 N 1.46896 * 109.47399 * 240.00163 * 2 1 3 13 13 C 1.46957 * 111.00317 * 59.99678 * 12 2 1 14 14 C 1.53044 * 109.36578 * 183.18971 * 13 12 2 15 15 N 1.46954 * 109.36432 * 301.59940 * 14 13 12 16 16 C 1.46905 * 111.00068 * 183.18970 * 15 14 13 17 17 C 1.53000 * 109.47123 * 170.00229 * 16 15 14 18 18 H 1.09002 * 109.47398 * 59.99875 * 17 16 15 19 19 O 1.42903 * 109.46726 * 299.99631 * 17 16 15 20 20 C 1.50699 * 109.47083 * 179.97438 * 17 16 15 21 21 H 1.08000 * 119.99792 * 359.97438 * 20 17 16 22 22 C 1.37878 * 119.99902 * 179.97438 * 20 17 16 23 23 N 1.31522 * 119.99730 * 179.97438 * 22 20 17 24 24 Si 1.86801 * 120.00223 * 0.02562 * 22 20 17 25 25 H 1.48501 * 109.46854 * 89.99533 * 24 22 20 26 26 H 1.48495 * 109.46995 * 209.99565 * 24 22 20 27 27 H 1.48503 * 109.46814 * 329.99605 * 24 22 20 28 28 C 1.46957 * 110.88264 * 59.32245 * 15 14 13 29 29 C 1.46954 * 110.99978 * 183.79833 * 12 2 1 30 30 H 1.09003 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47546 * 299.99886 * 1 2 3 32 32 H 1.09005 * 109.47149 * 60.00554 * 1 2 3 33 33 H 1.07993 * 119.97978 * 359.97438 * 5 4 2 34 34 H 1.08005 * 119.98267 * 180.25002 * 6 5 4 35 35 H 1.08002 * 120.03074 * 180.02562 * 9 7 6 36 36 H 1.08998 * 109.48575 * 63.22109 * 13 12 2 37 37 H 1.08999 * 109.48679 * 303.15674 * 13 12 2 38 38 H 1.09002 * 109.48962 * 181.63181 * 14 13 12 39 39 H 1.09006 * 109.48948 * 61.56416 * 14 13 12 40 40 H 1.08992 * 109.47078 * 49.99916 * 16 15 14 41 41 H 1.09004 * 109.46829 * 289.99562 * 16 15 14 42 42 H 0.96700 * 114.00234 * 300.00043 * 19 17 16 43 43 H 0.96999 * 119.99784 * 180.02562 * 23 22 20 44 44 H 1.09000 * 109.49243 * 60.64652 * 28 15 14 45 45 H 1.08999 * 109.48907 * 180.71293 * 28 15 14 46 46 H 1.09000 * 109.49338 * 296.77685 * 29 12 2 47 47 H 1.09002 * 109.48899 * 56.84124 * 29 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.4533 -2.0242 1.1462 6 6 2.9196 -2.6750 2.2726 7 6 2.9547 -2.0150 3.4896 8 9 3.4058 -2.6532 4.5917 9 6 2.5281 -0.7013 3.5763 10 6 2.0666 -0.0484 2.4461 11 9 1.6493 1.2338 2.5294 12 7 2.0197 -0.6924 -1.1994 13 6 1.5485 -0.0261 -2.4216 14 6 2.0125 -0.8213 -3.6442 15 7 3.4787 -0.9200 -3.6335 16 6 3.9685 -1.6125 -4.8329 17 6 5.4905 -1.4790 -4.9132 18 1 5.9416 -1.9247 -4.0266 19 8 5.8442 -0.0962 -4.9837 20 6 5.9930 -2.1899 -6.1433 21 1 5.2964 -2.6876 -6.8017 22 6 7.3419 -2.2050 -6.4281 23 7 7.7805 -2.8258 -7.5014 24 14 8.5468 -1.3448 -5.2888 25 1 9.0090 -2.2969 -4.2472 26 1 9.7128 -0.8646 -6.0730 27 1 7.8762 -0.1891 -4.6407 28 6 3.9499 -1.5864 -2.4114 29 6 3.4859 -0.7912 -1.1887 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8901 33 1 2.4218 -2.5413 0.1986 34 1 3.2521 -3.7003 2.2048 35 1 2.5555 -0.1857 4.5249 36 1 1.9586 0.9828 -2.4668 37 1 0.4597 0.0236 -2.4119 38 1 1.6889 -0.3132 -4.5526 39 1 1.5804 -1.8215 -3.6128 40 1 3.5174 -1.1669 -5.7194 41 1 3.6987 -2.6673 -4.7791 42 1 5.4765 0.3653 -5.7498 43 1 8.7295 -2.8368 -7.7016 44 1 3.5399 -2.5953 -2.3660 45 1 5.0387 -1.6361 -2.4211 46 1 3.9181 0.2090 -1.2200 47 1 3.8096 -1.2992 -0.2803 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809574405.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:59 Heat of formation + Delta-G solvation = -87.048091 kcal Electronic energy + Delta-G solvation = -30344.393723 eV Core-core repulsion = 25970.736166 eV Total energy + Delta-G solvation = -4373.657557 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.33617 -49.30407 -40.24982 -38.65701 -36.74519 -35.07068 -32.22487 -32.13166 -31.57713 -30.79493 -29.42062 -28.51572 -26.33135 -24.32028 -23.76040 -23.25620 -22.83076 -21.00679 -20.25397 -19.59932 -18.55311 -17.66118 -17.32895 -16.62225 -16.29323 -15.96374 -15.71423 -15.62465 -15.05249 -14.99305 -14.79249 -14.75777 -14.67795 -14.61304 -14.00028 -13.91804 -13.58985 -13.41972 -13.09593 -12.92150 -12.76071 -12.59943 -12.19157 -12.04614 -11.81940 -11.78089 -11.54355 -11.42170 -11.15857 -11.05575 -10.90415 -10.72979 -10.61280 -10.26614 -9.84258 -9.33083 -9.01839 -8.92523 -8.62087 -8.52073 -8.23253 -7.80067 -6.13230 -4.24417 0.58794 0.67508 3.00323 3.38811 3.48854 3.49724 3.60898 3.76354 4.06665 4.19161 4.27374 4.31596 4.53981 4.54146 4.78692 4.89061 4.94177 5.00771 5.17023 5.22411 5.29567 5.38064 5.40903 5.46027 5.48863 5.53434 5.55859 5.62273 5.66257 5.77261 5.78375 5.90008 5.91308 5.95379 5.98626 6.04781 6.12515 6.16847 6.34414 6.41923 6.60632 6.87372 6.90941 7.26074 7.38632 7.55295 7.69040 8.29390 8.83639 9.11606 9.52008 10.97482 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.014422 B = 0.002824 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.067991 B = 9913.160644 C =10994.589493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.123 3.877 3 H 0.056 0.944 4 C -0.121 4.121 5 C -0.041 4.041 6 C -0.166 4.166 7 C 0.126 3.874 8 F -0.133 7.133 9 C -0.195 4.195 10 C 0.132 3.868 11 F -0.130 7.130 12 N -0.533 5.533 13 C 0.059 3.941 14 C 0.057 3.943 15 N -0.531 5.531 16 C 0.041 3.959 17 C 0.202 3.798 18 H 0.051 0.949 19 O -0.571 6.571 20 C -0.566 4.566 21 H 0.071 0.929 22 C 0.083 3.917 23 N -0.894 5.894 24 Si 0.870 3.130 25 H -0.288 1.288 26 H -0.296 1.296 27 H -0.215 1.215 28 C 0.058 3.942 29 C 0.047 3.953 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.159 0.841 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.044 0.956 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.036 0.964 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.354 0.646 43 H 0.265 0.735 44 H 0.036 0.964 45 H 0.085 0.915 46 H 0.044 0.956 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.656 4.505 20.422 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.015 3.985 3 H 0.074 0.926 4 C -0.123 4.123 5 C -0.059 4.059 6 C -0.184 4.184 7 C 0.106 3.894 8 F -0.112 7.112 9 C -0.215 4.215 10 C 0.112 3.888 11 F -0.108 7.108 12 N -0.259 5.259 13 C -0.069 4.069 14 C -0.072 4.072 15 N -0.256 5.256 16 C -0.086 4.086 17 C 0.144 3.856 18 H 0.069 0.931 19 O -0.376 6.376 20 C -0.604 4.604 21 H 0.089 0.911 22 C -0.121 4.121 23 N -0.531 5.531 24 Si 0.697 3.303 25 H -0.215 1.215 26 H -0.223 1.223 27 H -0.138 1.138 28 C -0.070 4.070 29 C -0.081 4.081 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.176 0.824 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.051 0.949 42 H 0.200 0.800 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.103 0.897 46 H 0.063 0.937 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.207 4.350 20.911 26.219 hybrid contribution 0.497 0.386 0.158 0.649 sum -14.709 4.736 21.069 26.128 Atomic orbital electron populations 1.21863 0.92823 1.03029 1.02164 1.20369 0.95944 0.95078 0.87132 0.92613 1.19932 1.03057 0.95630 0.93656 1.21035 0.93267 0.92656 0.98944 1.21320 1.04009 1.01926 0.91193 1.17337 0.98253 0.90431 0.83329 1.91533 1.86504 1.81484 1.51653 1.20950 1.05972 0.94844 0.99701 1.17092 0.98954 0.79376 0.93381 1.91518 1.87516 1.34931 1.96877 1.62195 1.10861 1.51540 1.01257 1.22204 0.99671 0.96347 0.88663 1.22122 0.89088 0.98892 0.97076 1.62187 1.08126 1.52751 1.02497 1.22817 0.99521 0.95607 0.90650 1.19701 0.88340 0.80671 0.96883 0.93106 1.86658 1.76200 1.24545 1.50167 1.21522 0.93721 1.35947 1.09162 0.91125 1.24987 0.98679 0.93592 0.94821 1.69963 1.15072 1.42101 1.25996 0.87037 0.79551 0.82575 0.81173 1.21501 1.22287 1.13756 1.22135 1.00913 0.95094 0.88848 1.22434 0.86524 1.00416 0.98705 0.91370 0.92098 0.91579 0.82354 0.83846 0.83560 0.93818 0.90220 0.90546 0.94562 0.91263 0.94934 0.80048 0.92599 0.94562 0.89660 0.93724 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.94 37.16 0.33 -0.83 16 2 C 0.12 1.20 2.00 -68.87 -0.14 1.06 16 3 H 0.06 0.60 7.95 -51.92 -0.41 0.19 16 4 C -0.12 -1.17 4.44 -104.55 -0.46 -1.63 16 5 C -0.04 -0.37 7.25 -39.60 -0.29 -0.66 16 6 C -0.17 -1.41 10.02 -39.51 -0.40 -1.81 16 7 C 0.13 1.16 7.30 -39.43 -0.29 0.87 16 8 F -0.13 -1.31 17.27 2.25 0.04 -1.27 16 9 C -0.20 -1.74 10.01 -39.45 -0.39 -2.13 16 10 C 0.13 1.27 7.24 -39.43 -0.29 0.99 16 11 F -0.13 -1.32 16.66 2.25 0.04 -1.29 16 12 N -0.53 -5.83 3.74 -227.88 -0.85 -6.69 16 13 C 0.06 0.66 5.32 -3.77 -0.02 0.64 16 14 C 0.06 0.75 5.61 -3.77 -0.02 0.73 16 15 N -0.53 -8.57 4.58 -234.46 -1.07 -9.64 16 16 C 0.04 0.78 4.56 -3.82 -0.02 0.77 16 17 C 0.20 4.58 2.19 -27.88 -0.06 4.52 16 18 H 0.05 1.20 5.92 -51.93 -0.31 0.89 16 19 O -0.57 -12.84 10.01 -35.23 -0.35 -13.20 16 20 C -0.57 -15.44 9.34 -34.44 -0.32 -15.76 16 21 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 22 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 23 N -0.89 -27.15 13.96 55.43 0.77 -26.38 16 24 Si 0.87 21.71 26.99 -169.99 -4.59 17.12 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.22 -5.27 5.31 56.52 0.30 -4.97 16 28 C 0.06 0.88 5.41 -3.77 -0.02 0.86 16 29 C 0.05 0.59 4.73 -3.77 -0.02 0.57 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.50 6.34 -51.93 -0.33 0.17 16 33 H 0.16 1.45 6.47 -52.49 -0.34 1.11 16 34 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.74 6.14 -51.93 -0.32 0.42 16 38 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 39 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 1.30 8.03 -51.93 -0.42 0.88 16 41 H 0.03 0.63 8.12 -51.93 -0.42 0.21 16 42 H 0.35 7.18 9.04 45.56 0.41 7.60 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 1.43 6.34 -51.93 -0.33 1.10 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.08 0.92 4.99 -51.93 -0.26 0.66 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -30.42 371.22 -9.10 -39.52 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.18 Total: 5.74 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -2.50 Total: -9.53 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: -1.15 Total: -42.70 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.35 Total: -13.20 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.08 Total: -2.56 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.59 Total: 17.12 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.42 -9.10 -39.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809574405.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.528 kcal (2) G-P(sol) polarization free energy of solvation -30.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds