Wall clock time and date at job start Tue Mar 31 2020 23:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 C 1.53001 * 109.46886 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46963 * 299.99499 * 5 4 2 7 7 C 1.52997 * 109.47092 * 60.00194 * 6 5 4 8 8 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 9 9 H 1.08996 * 109.47407 * 60.00219 * 8 2 1 10 10 N 1.46496 * 109.47037 * 299.99555 * 8 2 1 11 11 C 1.34780 * 119.99894 * 155.00459 * 10 8 2 12 12 O 1.21540 * 120.00108 * 359.97438 * 11 10 8 13 13 N 1.34774 * 120.00170 * 180.02562 * 11 10 8 14 14 C 1.34780 * 120.00170 * 179.97438 * 13 11 10 15 15 O 1.21230 * 119.99432 * 359.97438 * 14 13 11 16 16 C 1.50696 * 119.99903 * 179.97438 * 14 13 11 17 17 O 1.45199 * 109.46802 * 179.97438 * 16 14 13 18 18 C 1.34235 * 117.00046 * 179.97438 * 17 16 14 19 19 O 1.20827 * 119.99808 * 0.02562 * 18 17 16 20 20 C 1.50698 * 120.00346 * 179.97438 * 18 17 16 21 21 C 1.52997 * 109.47387 * 180.02562 * 20 18 17 22 22 C 1.50698 * 109.47387 * 179.97438 * 21 20 18 23 23 H 1.08000 * 119.99804 * 359.97438 * 22 21 20 24 24 C 1.37871 * 120.00209 * 179.97438 * 22 21 20 25 25 N 1.31518 * 120.00139 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00053 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46921 * 90.00289 * 26 24 22 28 28 H 1.48499 * 109.47144 * 209.99996 * 26 24 22 29 29 H 1.48499 * 109.47244 * 330.00307 * 26 24 22 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 32 32 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 33 33 H 1.09001 * 109.47194 * 299.99650 * 4 2 1 34 34 H 1.08992 * 109.47399 * 59.99823 * 4 2 1 35 35 H 1.09000 * 109.47437 * 180.02562 * 5 4 2 36 36 H 1.09002 * 109.47508 * 59.99571 * 5 4 2 37 37 H 1.09002 * 109.47067 * 300.00341 * 6 5 4 38 38 H 1.09000 * 109.47312 * 180.02562 * 6 5 4 39 39 H 1.09001 * 109.47375 * 180.02562 * 7 6 5 40 40 H 1.09002 * 109.47497 * 59.99850 * 7 6 5 41 41 H 0.97000 * 120.00283 * 335.00508 * 10 8 2 42 42 H 0.97003 * 119.99881 * 359.97438 * 13 11 10 43 43 H 1.09006 * 109.47137 * 299.99265 * 16 14 13 44 44 H 1.09002 * 109.47473 * 59.99804 * 16 14 13 45 45 H 1.09002 * 109.46854 * 300.00156 * 20 18 17 46 46 H 1.08998 * 109.47173 * 60.00075 * 20 18 17 47 47 H 1.09003 * 109.46898 * 300.00242 * 21 20 18 48 48 H 1.08998 * 109.47269 * 59.99685 * 21 20 18 49 49 H 0.96999 * 119.99860 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0804 -1.4417 0.0002 7 6 3.5704 -0.7204 -1.2490 8 6 2.0399 -0.7212 -1.2493 9 1 1.6766 -0.2074 -2.1393 10 7 1.5516 -2.1024 -1.2493 11 6 1.4229 -2.7717 -2.4121 12 8 1.7115 -2.2292 -3.4607 13 7 0.9732 -4.0422 -2.4121 14 6 0.8440 -4.7113 -3.5750 15 8 1.1319 -4.1701 -4.6208 16 6 0.3418 -6.1321 -3.5749 17 8 0.2918 -6.6277 -4.9388 18 6 -0.1370 -7.8877 -5.1140 19 8 -0.4602 -8.5540 -4.1594 20 6 -0.2162 -8.4706 -6.5014 21 6 -0.7318 -9.9088 -6.4217 22 6 -0.8117 -10.4916 -7.8091 23 1 -0.5239 -9.8955 -8.6625 24 6 -1.2521 -11.7856 -7.9891 25 7 -1.6031 -12.5113 -6.9499 26 14 -1.3518 -12.5077 -9.7090 27 1 -0.0626 -13.1634 -10.0460 28 1 -2.4459 -13.5103 -9.7623 29 1 -1.6259 -11.4234 -10.6860 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3635 0.5138 -0.8899 33 1 1.6767 -0.2075 2.1392 34 1 1.6766 -1.7489 1.2492 35 1 3.9334 -1.2350 2.1392 36 1 3.9330 0.3071 1.2497 37 1 3.7174 -2.4695 0.0000 38 1 5.1704 -1.4417 0.0006 39 1 3.9337 -1.2343 -2.1390 40 1 3.9334 0.3074 -1.2488 41 1 1.3209 -2.5353 -0.4124 42 1 0.7425 -4.4751 -1.5752 43 1 1.0147 -6.7554 -2.9859 44 1 -0.6573 -6.1643 -3.1401 45 1 -0.8976 -7.8738 -7.1078 46 1 0.7747 -8.4642 -6.9554 47 1 -0.0508 -10.5058 -5.8150 48 1 -1.7228 -9.9149 -5.9678 49 1 -1.9127 -13.4218 -7.0765 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615968.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:16 Heat of formation + Delta-G solvation = -174.415887 kcal Electronic energy + Delta-G solvation = -29140.521536 eV Core-core repulsion = 24874.162943 eV Total energy + Delta-G solvation = -4266.358594 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.60005 -40.30029 -39.72034 -37.97621 -36.11864 -34.90449 -34.01473 -33.61064 -33.04537 -31.25537 -30.49671 -29.14860 -26.81768 -25.93153 -23.80043 -22.78361 -22.09240 -21.88823 -20.83287 -19.93040 -19.75760 -19.29803 -17.69755 -17.08782 -16.89965 -16.38681 -16.17971 -15.91530 -15.65062 -15.50364 -15.21191 -14.87646 -14.47177 -14.44715 -14.25246 -13.94339 -13.87309 -13.37697 -13.30995 -12.73093 -12.51963 -12.48035 -12.30532 -12.26387 -12.20940 -12.05986 -11.45746 -11.26090 -11.12029 -11.08444 -10.96163 -10.86212 -10.65871 -10.64821 -10.53519 -10.38317 -10.06799 -10.06145 -9.86982 -9.59075 -9.46510 -9.19207 -8.38356 -6.02516 -4.07158 1.77311 1.81661 2.68987 2.94573 2.98106 3.32333 3.38518 3.41997 3.62356 4.04797 4.15777 4.20511 4.21889 4.44541 4.53789 4.64254 4.85873 4.86741 4.88708 4.89191 4.92167 5.04654 5.07670 5.23550 5.27673 5.33265 5.39078 5.42070 5.49200 5.55810 5.59302 5.66085 5.74519 5.79556 5.81014 5.87378 6.04780 6.10958 6.11825 6.19421 6.50635 6.82642 7.14804 7.64784 7.70605 7.74193 7.96383 8.06490 8.15599 8.34947 8.99731 9.57134 11.08475 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.033211 B = 0.001565 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.884372 B =17881.429577 C =17998.999089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 H 0.087 0.913 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.118 4.118 7 C -0.134 4.134 8 C 0.167 3.833 9 H 0.091 0.909 10 N -0.729 5.729 11 C 0.696 3.304 12 O -0.527 6.527 13 N -0.691 5.691 14 C 0.518 3.482 15 O -0.440 6.440 16 C 0.049 3.951 17 O -0.342 6.342 18 C 0.461 3.539 19 O -0.504 6.504 20 C -0.102 4.102 21 C 0.033 3.967 22 C -0.529 4.529 23 H 0.060 0.940 24 C 0.059 3.941 25 N -0.890 5.890 26 Si 0.896 3.104 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.273 1.273 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.396 0.604 42 H 0.410 0.590 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.026 0.974 48 H 0.026 0.974 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.919 26.746 22.260 35.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 H 0.106 0.894 4 C -0.153 4.153 5 C -0.159 4.159 6 C -0.156 4.156 7 C -0.173 4.173 8 C 0.062 3.938 9 H 0.110 0.890 10 N -0.387 5.387 11 C 0.396 3.604 12 O -0.398 6.398 13 N -0.359 5.359 14 C 0.302 3.698 15 O -0.305 6.305 16 C -0.029 4.029 17 O -0.259 6.259 18 C 0.305 3.695 19 O -0.390 6.390 20 C -0.140 4.140 21 C -0.004 4.004 22 C -0.567 4.567 23 H 0.078 0.922 24 C -0.143 4.143 25 N -0.529 5.529 26 Si 0.724 3.276 27 H -0.206 1.206 28 H -0.212 1.212 29 H -0.198 1.198 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.232 0.768 42 H 0.245 0.755 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.045 0.955 48 H 0.045 0.955 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.197 27.223 20.926 35.301 hybrid contribution -0.341 -1.014 0.352 1.126 sum 7.856 26.209 21.278 34.661 Atomic orbital electron populations 1.21832 0.94498 1.02157 1.02099 1.21449 0.96204 1.00104 0.94025 0.89444 1.21609 0.95811 1.00408 0.97479 1.21567 0.95302 1.01021 0.97969 1.21499 1.00414 0.99496 0.94190 1.21976 0.95043 1.01497 0.98755 1.20918 0.93571 0.80279 0.98986 0.89047 1.45351 1.70900 1.15271 1.07157 1.16063 0.78756 0.80607 0.84964 1.91088 1.52018 1.66762 1.29954 1.44013 1.65840 1.14290 1.11735 1.20399 0.78426 0.87842 0.83117 1.90885 1.41562 1.67838 1.30175 1.22476 1.03869 0.91224 0.85376 1.86679 1.78919 1.32391 1.27922 1.24988 0.72228 0.77825 0.94484 1.90641 1.44972 1.60159 1.43270 1.21822 1.04405 1.00551 0.87182 1.19040 0.97374 0.86354 0.97632 1.21159 1.44797 0.98266 0.92456 0.92207 1.25013 0.95183 0.97087 0.97012 1.69991 1.43974 1.09409 1.29481 0.86529 0.77713 0.78962 0.84403 1.20595 1.21199 1.19756 0.92576 0.92361 0.92322 0.91454 0.92175 0.91895 0.91790 0.92045 0.91927 0.91061 0.90843 0.76820 0.75510 0.87754 0.87754 0.88591 0.88595 0.95522 0.95512 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.03 37.16 0.34 -0.27 16 2 C -0.10 -0.38 2.51 -90.62 -0.23 -0.61 16 3 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 4 C -0.12 -0.35 5.03 -26.73 -0.13 -0.48 16 5 C -0.12 -0.43 5.92 -26.73 -0.16 -0.59 16 6 C -0.12 -0.59 5.77 -26.73 -0.15 -0.74 16 7 C -0.13 -0.84 5.61 -26.71 -0.15 -0.99 16 8 C 0.17 1.03 2.23 -67.90 -0.15 0.88 16 9 H 0.09 0.77 7.58 -51.93 -0.39 0.38 16 10 N -0.73 -4.47 3.55 -58.66 -0.21 -4.67 16 11 C 0.70 7.30 8.47 -86.92 -0.74 6.56 16 12 O -0.53 -8.44 14.41 -18.48 -0.27 -8.71 16 13 N -0.69 -5.86 5.24 -15.78 -0.08 -5.94 16 14 C 0.52 6.63 7.85 -10.99 -0.09 6.54 16 15 O -0.44 -8.10 14.90 -25.36 -0.38 -8.47 16 16 C 0.05 0.58 5.94 36.00 0.21 0.80 16 17 O -0.34 -5.78 9.76 -45.92 -0.45 -6.23 16 18 C 0.46 8.84 7.96 36.00 0.29 9.13 16 19 O -0.50 -10.69 15.73 -18.75 -0.29 -10.99 16 20 C -0.10 -2.09 5.75 -27.89 -0.16 -2.25 16 21 C 0.03 0.86 4.26 -27.89 -0.12 0.75 16 22 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 23 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 24 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 25 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 26 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 30 H 0.06 0.23 7.45 -51.93 -0.39 -0.16 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.06 0.15 6.50 -51.93 -0.34 -0.19 16 35 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.06 0.32 7.61 -51.93 -0.39 -0.07 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.40 1.29 6.67 -40.82 -0.27 1.02 16 42 H 0.41 1.43 8.71 -40.82 -0.36 1.07 16 43 H 0.10 1.03 8.13 -51.93 -0.42 0.60 16 44 H 0.10 1.03 8.13 -51.93 -0.42 0.60 16 45 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 46 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 47 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 48 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 49 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 401.22 15.07 6.05 6.05 Total: -1.00 -38.42 401.22 -9.59 -48.01 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -8.02 Total: -4.66 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -1.65 Total: 5.23 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.45 Total: -36.69 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -1.39 Total: -34.40 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -38.42 -9.59 -48.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615968.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.407 kcal (2) G-P(sol) polarization free energy of solvation -38.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds