Wall clock time and date at job start Tue Mar 31 2020 23:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46798 * 2 1 4 4 C 1.53000 * 109.47158 * 120.00128 * 2 1 3 5 5 C 1.53001 * 109.46852 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47376 * 300.00201 * 5 4 2 7 7 C 1.53001 * 109.46999 * 59.99606 * 6 5 4 8 8 C 1.52993 * 109.47303 * 300.00134 * 7 6 5 9 9 H 1.08993 * 109.47621 * 299.99621 * 8 7 6 10 10 N 1.46508 * 109.46793 * 179.97438 * 8 7 6 11 11 C 1.34780 * 119.99598 * 85.00383 * 10 8 7 12 12 O 1.21535 * 120.00390 * 359.97438 * 11 10 8 13 13 N 1.34774 * 119.99575 * 180.02562 * 11 10 8 14 14 C 1.34776 * 119.99883 * 180.02562 * 13 11 10 15 15 O 1.21233 * 120.00019 * 359.97438 * 14 13 11 16 16 C 1.50701 * 119.99910 * 179.97438 * 14 13 11 17 17 O 1.45208 * 109.46716 * 179.97438 * 16 14 13 18 18 C 1.34232 * 116.99618 * 179.97438 * 17 16 14 19 19 O 1.20826 * 120.00236 * 359.97438 * 18 17 16 20 20 C 1.50697 * 120.00079 * 180.02562 * 18 17 16 21 21 C 1.52997 * 109.47466 * 179.97438 * 20 18 17 22 22 C 1.50701 * 109.47212 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00129 * 0.02562 * 22 21 20 24 24 C 1.37880 * 119.99861 * 179.97438 * 22 21 20 25 25 N 1.31510 * 119.99913 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99734 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47432 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.46890 * 120.00210 * 26 24 22 29 29 H 1.48501 * 109.47062 * 240.00257 * 26 24 22 30 30 H 1.09004 * 109.46981 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47187 * 299.99791 * 1 2 3 32 32 H 1.09002 * 109.47296 * 59.99780 * 1 2 3 33 33 H 1.08998 * 109.46799 * 300.00235 * 4 2 1 34 34 H 1.09006 * 109.46869 * 60.00168 * 4 2 1 35 35 H 1.08995 * 109.46781 * 60.00069 * 5 4 2 36 36 H 1.08997 * 109.46661 * 179.97438 * 5 4 2 37 37 H 1.08994 * 109.46828 * 180.02562 * 6 5 4 38 38 H 1.09001 * 109.46570 * 300.00212 * 6 5 4 39 39 H 1.09005 * 109.46843 * 179.97438 * 7 6 5 40 40 H 1.09002 * 109.46468 * 60.00680 * 7 6 5 41 41 H 0.96994 * 119.99851 * 264.99788 * 10 8 7 42 42 H 0.97002 * 120.00479 * 359.97438 * 13 11 10 43 43 H 1.08998 * 109.47164 * 59.99663 * 16 14 13 44 44 H 1.08996 * 109.47040 * 299.98875 * 16 14 13 45 45 H 1.09002 * 109.47120 * 59.99588 * 20 18 17 46 46 H 1.08998 * 109.46862 * 300.00390 * 20 18 17 47 47 H 1.09002 * 109.47153 * 59.99773 * 21 20 18 48 48 H 1.09001 * 109.46832 * 299.99964 * 21 20 18 49 49 H 0.97002 * 119.99768 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7218 1.2488 6 6 4.0795 -1.4433 -0.0005 7 6 3.5694 -0.7220 -1.2496 8 6 2.0395 -0.7216 -1.2493 9 1 1.6758 -1.7491 -1.2491 10 7 1.5511 -0.0304 -2.4452 11 6 1.4219 -0.7024 -3.6063 12 8 1.7109 -1.8816 -3.6614 13 7 0.9731 -0.0664 -4.7065 14 6 0.8434 -0.7385 -5.8676 15 8 1.1308 -1.9150 -5.9223 16 6 0.3410 -0.0275 -7.0977 17 8 0.2916 -0.9603 -8.2095 18 6 -0.1381 -0.4817 -9.3877 19 8 -0.4626 0.6779 -9.4866 20 6 -0.2169 -1.3911 -10.5868 21 6 -0.7338 -0.6027 -11.7918 22 6 -0.8120 -1.5120 -12.9910 23 1 -0.5223 -2.5486 -12.9025 24 6 -1.2543 -1.0206 -14.2010 25 7 -1.6074 0.2416 -14.3086 26 14 -1.3518 -2.1479 -15.6873 27 1 -0.9019 -3.5107 -15.3054 28 1 -2.7543 -2.2078 -16.1718 29 1 -0.4774 -1.6216 -16.7660 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6767 -0.2075 2.1392 34 1 1.6767 -1.7490 1.2491 35 1 3.9336 0.3057 1.2486 36 1 3.9333 -1.2352 2.1390 37 1 5.1695 -1.4440 -0.0004 38 1 3.7158 -2.4708 -0.0002 39 1 3.9328 -1.2359 -2.1397 40 1 3.9332 0.3055 -1.2498 41 1 1.3207 0.9108 -2.4012 42 1 0.7428 0.8748 -4.6627 43 1 1.0141 0.7941 -7.3428 44 1 -0.6578 0.3652 -6.9079 45 1 -0.8972 -2.2155 -10.3734 46 1 0.7744 -1.7863 -10.8087 47 1 -0.0538 0.2220 -12.0052 48 1 -1.7252 -0.2079 -11.5694 49 1 -1.9183 0.5873 -15.1600 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812615969.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:18 Heat of formation + Delta-G solvation = -203.058800 kcal Electronic energy + Delta-G solvation = -28831.773879 eV Core-core repulsion = 24564.173235 eV Total energy + Delta-G solvation = -4267.600644 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.47606 -41.54941 -40.40051 -38.97078 -37.55247 -35.94141 -35.64372 -35.15738 -33.41175 -33.18462 -30.95469 -30.04795 -27.88672 -27.18763 -24.83919 -23.95964 -22.73761 -22.15348 -21.80328 -21.52699 -21.07072 -19.83966 -19.20319 -18.37540 -18.12363 -18.05142 -17.14600 -17.06820 -16.81124 -16.46491 -16.06879 -15.87109 -15.43312 -15.36025 -15.15296 -14.92092 -14.79478 -14.28495 -14.28408 -13.95666 -13.83726 -13.77436 -13.34725 -13.17874 -12.85881 -12.85747 -12.52085 -12.49337 -12.25655 -12.15491 -12.02048 -11.89696 -11.81657 -11.76148 -11.51789 -11.45593 -11.41216 -11.37763 -11.26959 -11.16685 -10.86576 -10.57132 -10.12843 -8.19663 -6.32343 0.80205 0.81184 1.17219 1.44390 1.44453 1.58198 1.81633 2.08390 2.43655 2.76971 3.14545 3.41561 3.59640 3.75684 3.88972 3.92832 3.98821 4.04603 4.15456 4.22030 4.40166 4.44912 4.45380 4.47032 4.51319 4.54792 4.75394 4.81381 4.87122 4.87461 5.00036 5.05830 5.08104 5.15969 5.19790 5.24007 5.28207 5.34075 5.38892 5.40797 5.46085 5.48736 5.57427 5.59653 5.81776 6.14764 6.41953 6.72251 6.85784 6.93440 7.27098 7.37588 8.92893 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.039031 B = 0.001490 C = 0.001464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.205260 B =18792.199339 C =19115.854601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 H 0.098 0.902 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.118 4.118 7 C -0.128 4.128 8 C 0.166 3.834 9 H 0.060 0.940 10 N -0.708 5.708 11 C 0.693 3.307 12 O -0.585 6.585 13 N -0.666 5.666 14 C 0.527 3.473 15 O -0.503 6.503 16 C 0.045 3.955 17 O -0.350 6.350 18 C 0.474 3.526 19 O -0.529 6.529 20 C -0.097 4.097 21 C 0.039 3.961 22 C -0.546 4.546 23 H 0.073 0.927 24 C 0.000 4.000 25 N -0.932 5.932 26 Si 0.971 3.029 27 H -0.258 1.258 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.037 0.963 40 H 0.081 0.919 41 H 0.419 0.581 42 H 0.438 0.562 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.113 0.887 46 H 0.113 0.887 47 H -0.004 1.004 48 H -0.004 1.004 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.116 5.517 36.570 37.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 H 0.116 0.884 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.156 4.156 7 C -0.166 4.166 8 C 0.061 3.939 9 H 0.078 0.922 10 N -0.365 5.365 11 C 0.393 3.607 12 O -0.460 6.460 13 N -0.336 5.336 14 C 0.313 3.687 15 O -0.372 6.372 16 C -0.032 4.032 17 O -0.266 6.266 18 C 0.319 3.681 19 O -0.418 6.418 20 C -0.135 4.135 21 C 0.002 3.998 22 C -0.583 4.583 23 H 0.091 0.909 24 C -0.198 4.198 25 N -0.572 5.572 26 Si 0.795 3.205 27 H -0.181 1.181 28 H -0.205 1.205 29 H -0.205 1.205 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.100 0.900 41 H 0.257 0.743 42 H 0.278 0.722 43 H 0.152 0.848 44 H 0.152 0.848 45 H 0.131 0.869 46 H 0.131 0.869 47 H 0.014 0.986 48 H 0.014 0.986 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.390 4.205 36.373 37.564 hybrid contribution -0.393 0.581 -1.036 1.251 sum 7.997 4.786 35.336 36.545 Atomic orbital electron populations 1.21855 0.94410 1.01619 1.02734 1.21376 0.96120 1.00619 0.92491 0.88363 1.21587 0.95606 1.00611 0.97192 1.21554 0.95409 1.01341 0.97151 1.21500 1.00799 0.99065 0.94241 1.21906 0.94902 1.01808 0.98026 1.21013 0.93611 0.96381 0.82907 0.92197 1.45145 1.69472 1.14571 1.07294 1.16295 0.78331 0.84869 0.81178 1.91066 1.54405 1.16156 1.84355 1.43627 1.64532 1.16946 1.08477 1.20588 0.77008 0.86866 0.84259 1.90877 1.44604 1.17377 1.84370 1.22888 1.06376 0.91560 0.82382 1.86600 1.78159 1.43033 1.18845 1.24408 0.71835 0.88201 0.83629 1.90634 1.46267 1.20023 1.84854 1.21546 1.05455 0.98051 0.88404 1.18815 0.95150 0.94677 0.91175 1.21673 1.44240 0.97340 0.95081 0.90858 1.26014 0.94681 0.96632 1.02500 1.70141 1.45070 1.15630 1.26389 0.85312 0.77749 0.79138 0.78294 1.18136 1.20538 1.20528 0.94073 0.90989 0.92073 0.89767 0.92655 0.90678 0.91140 0.91274 0.93062 0.94453 0.90002 0.74308 0.72215 0.84837 0.84816 0.86912 0.86913 0.98570 0.98564 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.03 71.98 0.65 -0.31 16 2 C -0.09 -0.53 2.30 -10.79 -0.02 -0.56 16 3 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 4 C -0.11 -0.69 5.20 30.59 0.16 -0.53 16 5 C -0.12 -0.75 5.92 30.59 0.18 -0.57 16 6 C -0.12 -1.27 5.92 30.59 0.18 -1.08 16 7 C -0.13 -1.65 5.49 30.59 0.17 -1.48 16 8 C 0.17 2.06 1.90 44.99 0.09 2.14 16 9 H 0.06 1.16 7.58 -2.39 -0.02 1.15 16 10 N -0.71 -7.82 4.39 -457.87 -2.01 -9.83 16 11 C 0.69 14.47 8.47 179.05 1.52 15.98 16 12 O -0.58 -19.84 14.41 18.94 0.27 -19.56 16 13 N -0.67 -10.29 5.24 -440.53 -2.31 -12.60 16 14 C 0.53 13.07 7.85 87.66 0.69 13.75 16 15 O -0.50 -18.97 14.90 26.72 0.40 -18.57 16 16 C 0.04 0.98 5.94 71.24 0.42 1.41 16 17 O -0.35 -11.43 9.76 -45.08 -0.44 -11.87 16 18 C 0.47 17.88 7.96 71.23 0.57 18.45 16 19 O -0.53 -22.24 15.73 21.97 0.35 -21.89 16 20 C -0.10 -3.94 5.75 29.85 0.17 -3.77 16 21 C 0.04 2.08 4.26 29.85 0.13 2.21 16 22 C -0.55 -30.51 9.11 25.60 0.23 -30.28 16 23 H 0.07 3.82 7.74 -2.91 -0.02 3.79 16 24 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 25 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 26 Si 0.97 43.90 29.54 68.60 2.03 45.92 16 27 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 29 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 30 H 0.04 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.07 0.30 8.14 -2.38 -0.02 0.28 16 32 H 0.06 0.33 7.44 -2.39 -0.02 0.31 16 33 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 35 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.42 1.08 8.40 -92.71 -0.78 0.30 16 42 H 0.44 1.64 8.71 -92.71 -0.81 0.83 16 43 H 0.13 2.23 8.13 -2.39 -0.02 2.21 16 44 H 0.13 2.23 8.13 -2.39 -0.02 2.21 16 45 H 0.11 4.19 8.14 -2.39 -0.02 4.17 16 46 H 0.11 4.19 8.14 -2.39 -0.02 4.17 16 47 H 0.00 -0.24 8.10 -2.39 -0.02 -0.26 16 48 H 0.00 -0.24 8.10 -2.39 -0.02 -0.26 16 49 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -88.45 405.64 3.54 -84.91 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -0.62 Total: 4.51 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 5.59 Total: 15.82 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -4.03 Total: -79.27 kcal Atomic # 8 Polarization: -72.47 SS G_CDS: 0.58 Total: -71.90 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -88.45 3.54 -84.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615969.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.147 kcal (2) G-P(sol) polarization free energy of solvation -88.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds