Wall clock time and date at job start Tue Mar 31 2020 22:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.46952 * 2 1 4 4 O 1.21283 * 120.00243 * 359.97438 * 3 2 1 5 5 N 1.34780 * 120.00105 * 180.02562 * 3 2 1 6 6 C 1.46926 * 120.62616 * 355.30632 * 5 3 2 7 7 C 1.53191 * 108.77274 * 126.37248 * 6 5 3 8 8 C 1.53048 * 109.31604 * 54.63272 * 7 6 5 9 9 C 1.53072 * 109.65439 * 298.70224 * 8 7 6 10 10 H 1.08997 * 109.39299 * 301.27184 * 9 8 7 11 11 C 1.50699 * 109.62034 * 181.16790 * 9 8 7 12 12 O 1.21300 * 119.99801 * 339.71190 * 11 9 8 13 13 N 1.34773 * 120.00476 * 159.71093 * 11 9 8 14 14 C 1.37099 * 119.99527 * 6.28577 * 13 11 9 15 15 H 1.07994 * 120.00513 * 312.93731 * 14 13 11 16 16 C 1.38956 * 119.99968 * 132.93907 * 14 13 11 17 17 N 1.31408 * 120.00053 * 168.25839 * 16 14 13 18 18 Si 1.86803 * 119.99944 * 348.25037 * 16 14 13 19 19 H 1.48501 * 109.46758 * 90.58232 * 18 16 14 20 20 H 1.48494 * 109.47127 * 210.58290 * 18 16 14 21 21 H 1.48500 * 109.47165 * 330.58238 * 18 16 14 22 22 C 1.46499 * 120.00300 * 186.28679 * 13 11 9 23 23 C 1.53006 * 109.47162 * 90.00332 * 22 13 11 24 24 C 1.50700 * 109.46974 * 180.02562 * 23 22 13 25 25 O 1.20829 * 120.00233 * 359.97438 * 24 23 22 26 26 O 1.34225 * 119.99806 * 179.97438 * 24 23 22 27 27 C 1.45200 * 116.99999 * 179.97438 * 26 24 23 28 28 C 1.46926 * 120.63161 * 175.28627 * 5 3 2 29 29 H 1.08995 * 109.47011 * 299.99716 * 1 2 3 30 30 H 1.08994 * 109.47263 * 60.00151 * 1 2 3 31 31 H 1.08998 * 109.47118 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47011 * 240.00284 * 2 1 3 33 33 H 1.08994 * 109.47263 * 119.99849 * 2 1 3 34 34 H 1.09000 * 109.58524 * 246.15762 * 6 5 3 35 35 H 1.08994 * 109.58950 * 6.44299 * 6 5 3 36 36 H 1.08996 * 109.49959 * 174.58282 * 7 6 5 37 37 H 1.09000 * 109.49829 * 294.65049 * 7 6 5 38 38 H 1.08994 * 109.45597 * 58.65303 * 8 7 6 39 39 H 1.08990 * 109.46100 * 178.62800 * 8 7 6 40 40 H 0.97005 * 119.99803 * 185.00434 * 17 16 14 41 41 H 1.09007 * 109.46662 * 209.99656 * 22 13 11 42 42 H 1.08994 * 109.47238 * 329.99475 * 22 13 11 43 43 H 1.09002 * 109.46541 * 299.99639 * 23 22 13 44 44 H 1.08993 * 109.47103 * 59.99852 * 23 22 13 45 45 H 1.09004 * 109.47180 * 300.00138 * 27 26 24 46 46 H 1.08996 * 109.46871 * 60.00182 * 27 26 24 47 47 H 1.09004 * 109.47406 * 180.02562 * 27 26 24 48 48 H 1.09003 * 109.58523 * 353.41766 * 28 5 3 49 49 H 1.09007 * 109.58587 * 113.70059 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.3236 0.5651 0.1024 7 6 5.3127 0.6662 -1.0631 8 6 5.9464 2.0593 -1.0699 9 6 4.8590 3.1186 -1.2659 10 1 4.3377 2.9328 -2.2049 11 6 5.4872 4.4880 -1.3011 12 8 6.5907 4.6614 -0.8284 13 7 4.8229 5.5201 -1.8578 14 6 3.5274 5.3560 -2.2755 15 1 3.2557 4.4942 -2.8668 16 6 2.5639 6.2986 -1.9379 17 7 1.3861 6.2718 -2.5201 18 14 2.9428 7.6038 -0.6563 19 1 3.5081 8.8037 -1.3240 20 1 1.6939 7.9758 0.0557 21 1 3.9277 7.0694 0.3182 22 6 5.4850 6.8172 -2.0167 23 6 6.1863 6.8687 -3.3756 24 6 6.8680 8.2028 -3.5387 25 8 6.7995 9.0279 -2.6587 26 8 7.5512 8.4745 -4.6617 27 6 8.1818 9.7794 -4.7503 28 6 3.8631 3.0427 -0.1044 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 4.8629 0.6390 1.0467 35 1 3.7971 -0.3881 0.0559 36 1 6.0916 -0.0872 -0.9457 37 1 4.7857 0.5012 -2.0029 38 1 6.4524 2.2325 -0.1202 39 1 6.6686 2.1257 -1.8835 40 1 0.7394 6.9718 -2.3387 41 1 4.7426 7.6134 -1.9606 42 1 6.2202 6.9495 -1.2230 43 1 6.9287 6.0726 -3.4316 44 1 5.4510 6.7365 -4.1692 45 1 7.4211 10.5564 -4.6751 46 1 8.8984 9.8925 -3.9369 47 1 8.6990 9.8690 -5.7057 48 1 3.0328 3.7242 -0.2898 49 1 4.3626 3.3195 0.8241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871340861.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:03 Heat of formation + Delta-G solvation = -156.321251 kcal Electronic energy + Delta-G solvation = -31427.371421 eV Core-core repulsion = 27161.797470 eV Total energy + Delta-G solvation = -4265.573951 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.29618 -40.04840 -38.91980 -36.90131 -36.30932 -35.12522 -33.05277 -32.33537 -32.16147 -31.36993 -30.32259 -27.64750 -25.73629 -25.05448 -24.79231 -23.43912 -22.71218 -20.90864 -20.31863 -18.98622 -18.56957 -17.56501 -17.17144 -16.58104 -16.45666 -16.38011 -16.04143 -15.52745 -15.46760 -15.03506 -14.52770 -14.19734 -13.90490 -13.81065 -13.61943 -13.50004 -13.20798 -12.85891 -12.68302 -12.63824 -12.44908 -12.33222 -12.25221 -12.05932 -11.90680 -11.66517 -11.62242 -11.15531 -11.11603 -11.04297 -10.88085 -10.73879 -10.67770 -10.56894 -10.26130 -10.17880 -9.99935 -9.90814 -9.45335 -9.19655 -8.69385 -8.29547 -7.80539 -6.40824 -4.21863 2.48307 2.87611 2.96006 3.12820 3.22742 3.28698 3.34492 3.66316 4.14211 4.27448 4.69352 4.87253 4.96621 5.04739 5.10303 5.12888 5.14762 5.16958 5.19418 5.21106 5.44887 5.46885 5.50745 5.52567 5.57701 5.68213 5.68660 5.79130 5.83635 5.95961 6.00848 6.01764 6.04017 6.12535 6.26825 6.31871 6.33041 6.35254 6.49600 6.62226 6.67930 6.72287 6.84966 7.36917 7.73815 7.98533 8.06317 8.20197 8.55203 8.91887 9.24816 9.56904 10.66450 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014212 B = 0.003625 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.663779 B = 7722.433290 C = 9012.475945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.141 4.141 3 C 0.507 3.493 4 O -0.524 6.524 5 N -0.613 5.613 6 C 0.107 3.893 7 C -0.134 4.134 8 C -0.102 4.102 9 C -0.097 4.097 10 H 0.096 0.904 11 C 0.497 3.503 12 O -0.590 6.590 13 N -0.465 5.465 14 C -0.355 4.355 15 H 0.105 0.895 16 C 0.078 3.922 17 N -0.856 5.856 18 Si 0.872 3.128 19 H -0.269 1.269 20 H -0.286 1.286 21 H -0.260 1.260 22 C 0.111 3.889 23 C -0.121 4.121 24 C 0.467 3.533 25 O -0.510 6.510 26 O -0.363 6.363 27 C 0.035 3.965 28 C 0.127 3.873 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.276 0.724 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.115 0.885 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.097 0.903 48 H 0.116 0.884 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.589 -9.575 -0.465 11.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.181 4.181 3 C 0.294 3.706 4 O -0.399 6.399 5 N -0.347 5.347 6 C -0.017 4.017 7 C -0.172 4.172 8 C -0.140 4.140 9 C -0.119 4.119 10 H 0.114 0.886 11 C 0.286 3.714 12 O -0.474 6.474 13 N -0.185 5.185 14 C -0.482 4.482 15 H 0.122 0.878 16 C -0.131 4.131 17 N -0.490 5.490 18 Si 0.699 3.301 19 H -0.196 1.196 20 H -0.213 1.213 21 H -0.184 1.184 22 C -0.013 4.013 23 C -0.160 4.160 24 C 0.310 3.690 25 O -0.398 6.398 26 O -0.279 6.279 27 C -0.059 4.059 28 C 0.004 3.996 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.122 0.878 44 H 0.134 0.866 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.116 0.884 48 H 0.135 0.865 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.438 -8.648 0.052 10.781 hybrid contribution 0.192 1.032 0.410 1.127 sum 6.630 -7.615 0.463 10.107 Atomic orbital electron populations 1.21535 0.93242 1.01092 1.03627 1.21638 0.98446 0.94411 1.03646 1.20727 0.81808 0.91695 0.76348 1.90781 1.54492 1.46329 1.48287 1.48144 1.05438 1.07775 1.73390 1.21731 0.91205 0.89885 0.98840 1.21931 0.98504 0.97961 0.98795 1.21373 0.97042 0.92501 1.03078 1.21311 0.96600 0.92812 1.01205 0.88610 1.20406 0.85855 0.86826 0.78345 1.90556 1.22331 1.85263 1.49210 1.43673 1.12729 1.08267 1.53863 1.18943 0.81048 1.13377 1.34795 0.87795 1.25375 0.94403 0.97744 0.95576 1.69610 1.06127 1.32952 1.40349 0.86991 0.78099 0.81957 0.83025 1.19591 1.21301 1.18390 1.21445 0.97189 0.88241 0.94385 1.21798 1.00638 0.90964 1.02594 1.24031 0.75671 0.90241 0.79089 1.90651 1.58308 1.49153 1.41671 1.86534 1.63011 1.37057 1.41338 1.23203 0.97437 0.82434 1.02857 1.21457 0.98834 0.82817 0.96462 0.92087 0.91724 0.92474 0.89170 0.89470 0.91506 0.90010 0.90845 0.91445 0.91141 0.91675 0.91324 0.90581 0.90260 0.87755 0.86646 0.92066 0.92110 0.88413 0.86544 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.20 37.16 0.34 -1.26 16 2 C -0.14 -1.60 4.77 -27.88 -0.13 -1.73 16 3 C 0.51 8.42 7.69 -10.99 -0.08 8.33 16 4 O -0.52 -11.45 15.41 5.56 0.09 -11.36 16 5 N -0.61 -9.57 2.97 -172.77 -0.51 -10.08 16 6 C 0.11 1.18 6.35 -3.71 -0.02 1.15 16 7 C -0.13 -1.49 6.08 -26.61 -0.16 -1.65 16 8 C -0.10 -1.52 4.62 -26.67 -0.12 -1.64 16 9 C -0.10 -1.80 1.96 -91.64 -0.18 -1.98 16 10 H 0.10 1.85 6.91 -51.93 -0.36 1.49 16 11 C 0.50 10.89 6.80 -10.99 -0.07 10.81 16 12 O -0.59 -13.83 15.63 5.54 0.09 -13.74 16 13 N -0.46 -10.72 2.04 -114.81 -0.23 -10.96 16 14 C -0.35 -8.90 7.86 -14.93 -0.12 -9.02 16 15 H 0.10 2.75 7.03 -52.49 -0.37 2.39 16 16 C 0.08 2.08 5.41 -17.47 -0.09 1.98 16 17 N -0.86 -23.97 13.95 55.50 0.77 -23.19 16 18 Si 0.87 21.52 24.96 -169.99 -4.24 17.27 16 19 H -0.27 -6.56 6.65 56.52 0.38 -6.18 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 21 H -0.26 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.11 2.46 3.46 -4.04 -0.01 2.44 16 23 C -0.12 -2.24 6.14 -27.88 -0.17 -2.41 16 24 C 0.47 8.47 7.96 36.01 0.29 8.76 16 25 O -0.51 -10.57 15.73 -18.75 -0.29 -10.87 16 26 O -0.36 -5.60 10.56 -39.25 -0.41 -6.01 16 27 C 0.03 0.40 10.56 101.05 1.07 1.47 16 28 C 0.13 2.41 5.56 -3.71 -0.02 2.39 16 29 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 30 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.85 7.89 -51.93 -0.41 0.44 16 33 H 0.09 0.76 7.75 -51.93 -0.40 0.36 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.67 5.92 -51.93 -0.31 0.36 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.10 7.94 -51.93 -0.41 0.68 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.28 7.35 8.32 -40.82 -0.34 7.01 16 41 H 0.08 1.80 3.61 -51.92 -0.19 1.62 16 42 H 0.08 1.82 7.30 -51.93 -0.38 1.44 16 43 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 44 H 0.12 2.06 8.14 -51.93 -0.42 1.64 16 45 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 46 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 47 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.12 2.70 6.00 -51.93 -0.31 2.39 16 49 H 0.06 1.13 8.14 -51.92 -0.42 0.70 16 LS Contribution 390.98 15.07 5.89 5.89 Total: -1.00 -33.15 390.98 -6.16 -39.30 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -7.79 Total: 6.09 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: 0.50 Total: 17.65 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.03 Total: -44.23 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -0.54 Total: -41.98 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.24 Total: 17.27 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.15 -6.16 -39.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871340861.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.019 kcal (2) G-P(sol) polarization free energy of solvation -33.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds