Wall clock time and date at job start Tue Mar 31 2020 22:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.46952 * 2 1 4 4 O 1.21283 * 120.00243 * 359.97438 * 3 2 1 5 5 N 1.34780 * 120.00105 * 180.02562 * 3 2 1 6 6 C 1.46926 * 120.62616 * 355.30632 * 5 3 2 7 7 C 1.53191 * 108.77274 * 126.37248 * 6 5 3 8 8 C 1.53048 * 109.31604 * 54.63272 * 7 6 5 9 9 C 1.53072 * 109.65439 * 298.70224 * 8 7 6 10 10 H 1.08997 * 109.39299 * 301.27184 * 9 8 7 11 11 C 1.50699 * 109.62034 * 181.16790 * 9 8 7 12 12 O 1.21300 * 119.99801 * 339.71190 * 11 9 8 13 13 N 1.34773 * 120.00476 * 159.71093 * 11 9 8 14 14 C 1.37099 * 119.99527 * 6.28577 * 13 11 9 15 15 H 1.07994 * 120.00513 * 312.93731 * 14 13 11 16 16 C 1.38956 * 119.99968 * 132.93907 * 14 13 11 17 17 N 1.31408 * 120.00053 * 168.25839 * 16 14 13 18 18 Si 1.86803 * 119.99944 * 348.25037 * 16 14 13 19 19 H 1.48501 * 109.46758 * 90.58232 * 18 16 14 20 20 H 1.48494 * 109.47127 * 210.58290 * 18 16 14 21 21 H 1.48500 * 109.47165 * 330.58238 * 18 16 14 22 22 C 1.46499 * 120.00300 * 186.28679 * 13 11 9 23 23 C 1.53006 * 109.47162 * 90.00332 * 22 13 11 24 24 C 1.50700 * 109.46974 * 180.02562 * 23 22 13 25 25 O 1.20829 * 120.00233 * 359.97438 * 24 23 22 26 26 O 1.34225 * 119.99806 * 179.97438 * 24 23 22 27 27 C 1.45200 * 116.99999 * 179.97438 * 26 24 23 28 28 C 1.46926 * 120.63161 * 175.28627 * 5 3 2 29 29 H 1.08995 * 109.47011 * 299.99716 * 1 2 3 30 30 H 1.08994 * 109.47263 * 60.00151 * 1 2 3 31 31 H 1.08998 * 109.47118 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47011 * 240.00284 * 2 1 3 33 33 H 1.08994 * 109.47263 * 119.99849 * 2 1 3 34 34 H 1.09000 * 109.58524 * 246.15762 * 6 5 3 35 35 H 1.08994 * 109.58950 * 6.44299 * 6 5 3 36 36 H 1.08996 * 109.49959 * 174.58282 * 7 6 5 37 37 H 1.09000 * 109.49829 * 294.65049 * 7 6 5 38 38 H 1.08994 * 109.45597 * 58.65303 * 8 7 6 39 39 H 1.08990 * 109.46100 * 178.62800 * 8 7 6 40 40 H 0.97005 * 119.99803 * 185.00434 * 17 16 14 41 41 H 1.09007 * 109.46662 * 209.99656 * 22 13 11 42 42 H 1.08994 * 109.47238 * 329.99475 * 22 13 11 43 43 H 1.09002 * 109.46541 * 299.99639 * 23 22 13 44 44 H 1.08993 * 109.47103 * 59.99852 * 23 22 13 45 45 H 1.09004 * 109.47180 * 300.00138 * 27 26 24 46 46 H 1.08996 * 109.46871 * 60.00182 * 27 26 24 47 47 H 1.09004 * 109.47406 * 180.02562 * 27 26 24 48 48 H 1.09003 * 109.58523 * 353.41766 * 28 5 3 49 49 H 1.09007 * 109.58587 * 113.70059 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.3236 0.5651 0.1024 7 6 5.3127 0.6662 -1.0631 8 6 5.9464 2.0593 -1.0699 9 6 4.8590 3.1186 -1.2659 10 1 4.3377 2.9328 -2.2049 11 6 5.4872 4.4880 -1.3011 12 8 6.5907 4.6614 -0.8284 13 7 4.8229 5.5201 -1.8578 14 6 3.5274 5.3560 -2.2755 15 1 3.2557 4.4942 -2.8668 16 6 2.5639 6.2986 -1.9379 17 7 1.3861 6.2718 -2.5201 18 14 2.9428 7.6038 -0.6563 19 1 3.5081 8.8037 -1.3240 20 1 1.6939 7.9758 0.0557 21 1 3.9277 7.0694 0.3182 22 6 5.4850 6.8172 -2.0167 23 6 6.1863 6.8687 -3.3756 24 6 6.8680 8.2028 -3.5387 25 8 6.7995 9.0279 -2.6587 26 8 7.5512 8.4745 -4.6617 27 6 8.1818 9.7794 -4.7503 28 6 3.8631 3.0427 -0.1044 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 4.8629 0.6390 1.0467 35 1 3.7971 -0.3881 0.0559 36 1 6.0916 -0.0872 -0.9457 37 1 4.7857 0.5012 -2.0029 38 1 6.4524 2.2325 -0.1202 39 1 6.6686 2.1257 -1.8835 40 1 0.7394 6.9718 -2.3387 41 1 4.7426 7.6134 -1.9606 42 1 6.2202 6.9495 -1.2230 43 1 6.9287 6.0726 -3.4316 44 1 5.4510 6.7365 -4.1692 45 1 7.4211 10.5564 -4.6751 46 1 8.8984 9.8925 -3.9369 47 1 8.6990 9.8690 -5.7057 48 1 3.0328 3.7242 -0.2898 49 1 4.3626 3.3195 0.8241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871340861.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:02 Heat of formation + Delta-G solvation = -178.105006 kcal Electronic energy + Delta-G solvation = -31428.316036 eV Core-core repulsion = 27161.797470 eV Total energy + Delta-G solvation = -4266.518566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.77322 -41.42190 -40.52000 -38.26519 -37.69170 -36.96368 -34.41839 -34.13620 -33.31718 -32.90184 -31.70356 -28.79252 -27.05958 -26.85454 -26.26422 -24.70685 -23.93963 -22.20456 -21.76241 -20.82175 -19.77077 -19.11873 -18.58683 -18.23371 -17.96030 -17.80732 -17.56065 -16.86647 -16.81694 -16.60378 -15.96119 -15.83386 -15.33704 -15.17479 -14.97848 -14.69829 -14.55635 -14.52623 -14.21354 -14.06926 -13.96953 -13.66895 -13.63418 -13.46400 -13.10415 -13.03026 -12.90489 -12.78567 -12.60870 -12.33847 -12.14698 -11.97964 -11.92243 -11.85181 -11.80334 -11.77635 -11.70210 -11.46292 -11.19007 -10.81109 -10.48234 -9.79058 -9.56808 -8.51639 -6.30053 1.03666 1.11146 1.21368 1.28920 1.51339 1.65762 1.81962 2.07887 2.14350 2.59482 2.89300 3.63547 3.66698 3.78087 3.89366 3.94361 4.00286 4.06584 4.16732 4.24537 4.26520 4.27553 4.28578 4.31804 4.35173 4.41144 4.60342 4.64419 4.65924 4.70544 4.80842 4.82264 4.86534 4.94133 5.00315 5.03928 5.10531 5.15331 5.23964 5.27594 5.39289 5.40168 5.50573 5.57946 6.04928 6.14065 6.54129 6.59937 6.90311 7.28891 7.30591 7.64542 8.59621 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014212 B = 0.003625 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.663779 B = 7722.433290 C = 9012.475945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.494 3.506 4 O -0.592 6.592 5 N -0.611 5.611 6 C 0.099 3.901 7 C -0.125 4.125 8 C -0.097 4.097 9 C -0.091 4.091 10 H 0.085 0.915 11 C 0.494 3.506 12 O -0.602 6.602 13 N -0.476 5.476 14 C -0.327 4.327 15 H 0.087 0.913 16 C 0.044 3.956 17 N -0.894 5.894 18 Si 0.911 3.089 19 H -0.263 1.263 20 H -0.288 1.288 21 H -0.271 1.271 22 C 0.109 3.891 23 C -0.113 4.113 24 C 0.474 3.526 25 O -0.541 6.541 26 O -0.359 6.359 27 C 0.026 3.974 28 C 0.134 3.866 29 H 0.041 0.959 30 H 0.035 0.965 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.081 0.919 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.277 0.723 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.139 0.861 48 H 0.066 0.934 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.633 -12.521 -0.795 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.284 3.716 4 O -0.472 6.472 5 N -0.344 5.344 6 C -0.022 4.022 7 C -0.163 4.163 8 C -0.135 4.135 9 C -0.112 4.112 10 H 0.103 0.897 11 C 0.284 3.716 12 O -0.486 6.486 13 N -0.198 5.198 14 C -0.455 4.455 15 H 0.105 0.895 16 C -0.161 4.161 17 N -0.530 5.530 18 Si 0.739 3.261 19 H -0.189 1.189 20 H -0.215 1.215 21 H -0.196 1.196 22 C -0.014 4.014 23 C -0.152 4.152 24 C 0.318 3.682 25 O -0.431 6.431 26 O -0.275 6.275 27 C -0.067 4.067 28 C 0.009 3.991 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.113 0.887 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.099 0.901 35 H 0.143 0.857 36 H 0.131 0.869 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.157 0.843 48 H 0.084 0.916 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.539 -11.629 -0.294 14.430 hybrid contribution -0.314 1.945 0.502 2.033 sum 8.226 -9.684 0.208 12.708 Atomic orbital electron populations 1.21554 0.93936 1.02705 1.01379 1.21727 0.97754 0.90554 1.06826 1.21893 0.81453 0.93510 0.74701 1.90757 1.56227 1.48851 1.51389 1.48287 1.06291 1.07318 1.72514 1.22169 0.90734 0.89740 0.99539 1.21933 0.99353 0.96039 0.98961 1.21388 0.95775 0.93571 1.02772 1.21310 0.97579 0.91998 1.00358 0.89719 1.21033 0.85548 0.87752 0.77228 1.90537 1.22848 1.85750 1.49504 1.43771 1.12245 1.09063 1.54673 1.18698 0.81780 1.12026 1.33023 0.89529 1.25760 0.94455 0.99303 0.96630 1.69663 1.07030 1.34101 1.42244 0.86379 0.77310 0.80946 0.81502 1.18932 1.21514 1.19569 1.21356 0.96541 0.87188 0.96309 1.21606 1.01015 0.92157 1.00383 1.23786 0.75486 0.89549 0.79387 1.90642 1.59613 1.49967 1.42895 1.86506 1.62394 1.39085 1.39508 1.23612 0.97429 0.80432 1.05250 1.21045 0.96962 0.84750 0.96312 0.93967 0.94541 0.88712 0.86082 0.85561 0.90089 0.85748 0.86883 0.91253 0.91689 0.91509 0.91251 0.92311 0.91386 0.86253 0.86014 0.92188 0.91850 0.84345 0.91561 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.20 71.98 0.66 -2.35 16 2 C -0.13 -2.49 4.77 29.85 0.14 -2.34 16 3 C 0.49 16.19 7.69 87.66 0.67 16.87 16 4 O -0.59 -27.29 15.41 -3.04 -0.05 -27.34 16 5 N -0.61 -18.39 2.97 -818.91 -2.44 -20.82 16 6 C 0.10 1.77 6.35 86.36 0.55 2.32 16 7 C -0.12 -2.26 6.08 30.67 0.19 -2.07 16 8 C -0.10 -2.69 4.62 30.63 0.14 -2.55 16 9 C -0.09 -3.38 1.96 -11.45 -0.02 -3.40 16 10 H 0.08 3.34 6.91 -2.39 -0.02 3.33 16 11 C 0.49 22.03 6.80 87.66 0.60 22.62 16 12 O -0.60 -28.29 15.63 -3.09 -0.05 -28.34 16 13 N -0.48 -22.60 2.04 -635.53 -1.30 -23.90 16 14 C -0.33 -17.12 7.86 84.04 0.66 -16.46 16 15 H 0.09 4.82 7.03 -2.91 -0.02 4.80 16 16 C 0.04 2.43 5.41 84.93 0.46 2.89 16 17 N -0.89 -52.21 13.95 21.66 0.30 -51.91 16 18 Si 0.91 46.23 24.96 68.60 1.71 47.95 16 19 H -0.26 -12.98 6.65 99.48 0.66 -12.31 16 20 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 21 H -0.27 -14.05 7.11 99.48 0.71 -13.34 16 22 C 0.11 4.95 3.46 86.38 0.30 5.25 16 23 C -0.11 -4.16 6.14 29.85 0.18 -3.98 16 24 C 0.47 16.95 7.96 71.24 0.57 17.51 16 25 O -0.54 -22.44 15.73 21.96 0.35 -22.10 16 26 O -0.36 -10.49 10.56 -51.37 -0.54 -11.03 16 27 C 0.03 0.54 10.56 113.37 1.20 1.74 16 28 C 0.13 5.24 5.56 86.36 0.48 5.72 16 29 H 0.04 1.06 8.10 -2.39 -0.02 1.04 16 30 H 0.04 0.98 8.10 -2.39 -0.02 0.96 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.12 1.66 7.89 -2.39 -0.02 1.64 16 33 H 0.13 1.51 7.75 -2.39 -0.02 1.49 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.12 1.23 5.92 -2.39 -0.01 1.22 16 36 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.06 1.89 7.94 -2.39 -0.02 1.87 16 39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.28 15.41 8.32 -92.70 -0.77 14.63 16 41 H 0.06 2.86 3.61 -2.38 -0.01 2.85 16 42 H 0.07 3.20 7.30 -2.39 -0.02 3.19 16 43 H 0.12 4.02 8.14 -2.39 -0.02 4.00 16 44 H 0.12 4.33 8.14 -2.39 -0.02 4.31 16 45 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 46 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 47 H 0.14 1.80 8.14 -2.38 -0.02 1.78 16 48 H 0.07 3.29 6.00 -2.39 -0.01 3.28 16 49 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -78.88 390.98 5.67 -73.21 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.90 Total: 22.52 kcal Atomic # 6 Polarization: 34.99 SS G_CDS: 6.78 Total: 41.76 kcal Atomic # 7 Polarization: -93.20 SS G_CDS: -3.43 Total: -96.63 kcal Atomic # 8 Polarization: -88.51 SS G_CDS: -0.29 Total: -88.81 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.71 Total: 47.95 kcal Total: -78.88 5.67 -73.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871340861.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.895 kcal (2) G-P(sol) polarization free energy of solvation -78.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds