Wall clock time and date at job start Tue Mar 31 2020 22:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50701 * 109.46834 * 2 1 4 4 O 1.21285 * 120.00124 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99760 * 180.02562 * 3 2 1 6 6 C 1.46922 * 120.63232 * 5.18965 * 5 3 2 7 7 C 1.53192 * 108.77889 * 233.59248 * 6 5 3 8 8 C 1.53046 * 109.30894 * 305.36664 * 7 6 5 9 9 C 1.53039 * 109.54025 * 61.36529 * 8 7 6 10 10 C 1.46928 * 120.62874 * 185.17510 * 5 3 2 11 11 H 1.09004 * 109.58427 * 246.34128 * 10 5 3 12 12 C 1.50703 * 109.58686 * 6.62219 * 10 5 3 13 13 O 1.21294 * 119.99990 * 59.26107 * 12 10 5 14 14 N 1.34783 * 119.99862 * 239.26287 * 12 10 5 15 15 C 1.37102 * 119.99984 * 355.90117 * 14 12 10 16 16 H 1.07999 * 119.99900 * 43.91600 * 15 14 12 17 17 C 1.38944 * 119.99700 * 223.91635 * 15 14 12 18 18 N 1.31412 * 120.00267 * 207.21867 * 17 15 14 19 19 Si 1.86806 * 120.00039 * 27.22400 * 17 15 14 20 20 H 1.48506 * 109.46986 * 94.31029 * 19 17 15 21 21 H 1.48500 * 109.46953 * 214.30942 * 19 17 15 22 22 H 1.48493 * 109.47149 * 334.30938 * 19 17 15 23 23 C 1.46497 * 119.99550 * 175.89778 * 14 12 10 24 24 C 1.53002 * 109.47435 * 274.94560 * 23 14 12 25 25 C 1.50693 * 109.46971 * 176.97522 * 24 23 14 26 26 O 1.20818 * 120.00321 * 0.02562 * 25 24 23 27 27 O 1.34233 * 119.99692 * 179.72832 * 25 24 23 28 28 C 1.45199 * 117.00002 * 180.27648 * 27 25 24 29 29 H 1.09002 * 109.46820 * 299.99555 * 1 2 3 30 30 H 1.08999 * 109.47091 * 60.00055 * 1 2 3 31 31 H 1.08997 * 109.46791 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46820 * 240.00445 * 2 1 3 33 33 H 1.08999 * 109.47091 * 119.99945 * 2 1 3 34 34 H 1.08998 * 109.58683 * 353.37869 * 6 5 3 35 35 H 1.08999 * 109.58407 * 113.65860 * 6 5 3 36 36 H 1.08996 * 109.50102 * 65.31564 * 7 6 5 37 37 H 1.08995 * 109.49734 * 185.38736 * 7 6 5 38 38 H 1.08998 * 109.45925 * 181.38932 * 8 7 6 39 39 H 1.09007 * 109.46050 * 301.35686 * 8 7 6 40 40 H 1.08998 * 109.49681 * 178.68690 * 9 8 7 41 41 H 1.08996 * 109.49846 * 58.58484 * 9 8 7 42 42 H 0.96997 * 120.00264 * 180.02562 * 18 17 15 43 43 H 1.09008 * 109.46566 * 154.94674 * 23 14 12 44 44 H 1.08993 * 109.47314 * 34.95174 * 23 14 12 45 45 H 1.09000 * 109.46721 * 56.97607 * 24 23 14 46 46 H 1.09000 * 109.46871 * 296.97674 * 24 23 14 47 47 H 1.09009 * 109.47215 * 179.97438 * 28 27 25 48 48 H 1.08999 * 109.47122 * 300.00038 * 28 27 25 49 49 H 1.09004 * 109.47071 * 60.00063 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.3234 0.5661 -0.1154 7 6 5.3159 0.6574 1.0479 8 6 5.9495 2.0505 1.0645 9 6 4.8609 3.1055 1.2743 10 6 3.8633 3.0418 0.1135 11 1 4.3601 3.3265 -0.8141 12 6 2.7162 3.9818 0.3812 13 8 2.0258 3.8307 1.3670 14 7 2.4574 4.9902 -0.4748 15 6 3.2873 5.2125 -1.5432 16 1 3.6393 4.3809 -2.1356 17 6 3.6753 6.5075 -1.8638 18 7 3.9889 6.8118 -3.1031 19 14 3.7515 7.8162 -0.5329 20 1 5.1342 7.8977 0.0026 21 1 3.3650 9.1298 -1.1078 22 1 2.8158 7.4615 0.5642 23 6 1.2893 5.8487 -0.2635 24 6 0.0562 5.1960 -0.8916 25 6 -1.1584 6.0423 -0.6101 26 8 -1.0491 7.0630 0.0270 27 8 -2.3609 5.6652 -1.0724 28 6 -3.4854 6.5320 -0.7685 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 3.7973 -0.3875 -0.0729 35 1 4.8581 0.6465 -1.0619 36 1 4.7916 0.4851 1.9878 37 1 6.0942 -0.0952 0.9221 38 1 6.6743 2.1101 1.8764 39 1 6.4526 2.2319 0.1146 40 1 5.3157 4.0954 1.3093 41 1 4.3409 2.9101 2.2121 42 1 4.2602 7.7158 -3.3268 43 1 1.4630 6.8193 -0.7281 44 1 1.1249 5.9819 0.8057 45 1 -0.0861 4.2030 -0.4652 46 1 0.1988 5.1118 -1.9689 47 1 -4.3945 6.1125 -1.1996 48 1 -3.5996 6.6135 0.3125 49 1 -3.3064 7.5209 -1.1906 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871341782.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:26 Heat of formation + Delta-G solvation = -142.008432 kcal Electronic energy + Delta-G solvation = -32580.316275 eV Core-core repulsion = 28315.362974 eV Total energy + Delta-G solvation = -4264.953301 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.39449 -39.97547 -38.02650 -37.01646 -36.13260 -34.80157 -32.89543 -32.31887 -32.13192 -31.22641 -30.26011 -27.52399 -25.93262 -24.76154 -24.19290 -23.91354 -22.53974 -20.52377 -20.26976 -19.31603 -18.48011 -17.34439 -17.21841 -16.30186 -16.24304 -16.08464 -15.87707 -15.49695 -15.19946 -14.63162 -14.32883 -14.12061 -13.76829 -13.71519 -13.66215 -13.36099 -13.19545 -12.95885 -12.71422 -12.48270 -12.33264 -12.30101 -11.92469 -11.84573 -11.70287 -11.53654 -11.47787 -11.18876 -10.99498 -10.91096 -10.81098 -10.69634 -10.57535 -10.51436 -10.41082 -10.11246 -10.00011 -9.76061 -9.14306 -8.86350 -8.39957 -8.11656 -7.55824 -6.48473 -4.07448 2.70051 3.04203 3.15990 3.16805 3.25266 3.31608 3.42264 4.10393 4.23076 4.42088 4.82188 4.85878 4.93334 5.00187 5.14162 5.20522 5.24975 5.26870 5.33347 5.34226 5.43669 5.50313 5.56223 5.66732 5.70258 5.82689 5.86802 5.87827 5.93920 5.97553 6.00053 6.08969 6.12190 6.23600 6.25984 6.31170 6.37017 6.40541 6.64614 6.67683 6.73070 6.88967 6.97081 7.47038 7.83106 8.15342 8.19958 8.31288 8.73142 9.06491 9.47359 9.88097 10.61679 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009224 B = 0.005600 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.961322 B = 4998.957451 C = 7207.776783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 C 0.501 3.499 4 O -0.493 6.493 5 N -0.606 5.606 6 C 0.111 3.889 7 C -0.134 4.134 8 C -0.117 4.117 9 C -0.119 4.119 10 C 0.132 3.868 11 H 0.107 0.893 12 C 0.517 3.483 13 O -0.575 6.575 14 N -0.466 5.466 15 C -0.354 4.354 16 H 0.097 0.903 17 C 0.078 3.922 18 N -0.852 5.852 19 Si 0.852 3.148 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.251 1.251 23 C 0.142 3.858 24 C -0.125 4.125 25 C 0.468 3.532 26 O -0.516 6.516 27 O -0.363 6.363 28 C 0.035 3.965 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.274 0.726 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.121 0.879 46 H 0.106 0.894 47 H 0.096 0.904 48 H 0.059 0.941 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.632 -12.496 3.437 13.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.178 4.178 3 C 0.288 3.712 4 O -0.366 6.366 5 N -0.342 5.342 6 C -0.012 4.012 7 C -0.173 4.173 8 C -0.155 4.155 9 C -0.158 4.158 10 C 0.027 3.973 11 H 0.125 0.875 12 C 0.307 3.693 13 O -0.457 6.457 14 N -0.188 5.188 15 C -0.481 4.481 16 H 0.114 0.886 17 C -0.131 4.131 18 N -0.485 5.485 19 Si 0.677 3.323 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.174 1.174 23 C 0.018 3.982 24 C -0.164 4.164 25 C 0.312 3.688 26 O -0.404 6.404 27 O -0.280 6.280 28 C -0.059 4.059 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.139 0.861 46 H 0.124 0.876 47 H 0.114 0.886 48 H 0.078 0.922 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.376 -11.585 3.957 12.470 hybrid contribution 0.211 0.941 0.397 1.043 sum -2.165 -10.644 4.353 11.702 Atomic orbital electron populations 1.21511 0.93301 1.00877 1.03549 1.21603 0.98375 0.94555 1.03274 1.20664 0.81967 0.91643 0.76882 1.90743 1.54227 1.44815 1.46779 1.47985 1.05416 1.06610 1.74236 1.21674 0.91098 0.89762 0.98644 1.21919 0.98527 0.97809 0.99013 1.21504 0.97575 0.94185 1.02206 1.21754 0.95927 0.99669 0.98442 1.21217 0.94677 0.80791 1.00660 0.87493 1.19706 0.84305 0.82719 0.82610 1.90537 1.51028 1.74235 1.29881 1.43374 1.21500 1.29293 1.24653 1.18845 1.28241 0.94484 1.06487 0.88608 1.25374 0.94672 0.97643 0.95363 1.69864 1.41073 1.20933 1.16672 0.87281 0.79382 0.81358 0.84315 1.20288 1.20793 1.17418 1.21209 0.84053 0.92933 0.99977 1.21916 0.88852 1.00743 1.04883 1.24232 0.84438 0.84897 0.75245 1.90615 1.86116 1.25790 1.37871 1.86557 1.17443 1.52005 1.71995 1.23169 0.86802 0.94437 1.01533 0.91948 0.91957 0.92705 0.89608 0.89658 0.90015 0.91308 0.91604 0.91044 0.91808 0.91444 0.90588 0.91170 0.91589 0.91341 0.91212 0.86124 0.87614 0.88601 0.92246 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.20 37.16 0.34 -1.34 16 2 C -0.14 -1.69 4.77 -27.88 -0.13 -1.82 16 3 C 0.50 8.78 7.39 -10.98 -0.08 8.70 16 4 O -0.49 -10.73 10.02 -19.39 -0.19 -10.93 16 5 N -0.61 -9.89 2.97 -166.53 -0.49 -10.38 16 6 C 0.11 1.26 6.35 -3.71 -0.02 1.23 16 7 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 8 C -0.12 -1.43 5.88 -26.69 -0.16 -1.58 16 9 C -0.12 -1.97 5.32 -26.61 -0.14 -2.11 16 10 C 0.13 2.55 3.00 -68.75 -0.21 2.34 16 11 H 0.11 2.18 5.78 -51.93 -0.30 1.88 16 12 C 0.52 12.18 4.26 -10.98 -0.05 12.13 16 13 O -0.57 -14.83 14.07 -19.40 -0.27 -15.11 16 14 N -0.47 -11.48 2.03 -114.81 -0.23 -11.71 16 15 C -0.35 -9.11 8.57 -14.93 -0.13 -9.23 16 16 H 0.10 2.57 6.89 -52.49 -0.36 2.21 16 17 C 0.08 2.06 5.11 -17.47 -0.09 1.97 16 18 N -0.85 -23.26 13.96 55.50 0.77 -22.48 16 19 Si 0.85 20.69 26.40 -169.99 -4.49 16.21 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.25 -6.24 5.67 56.52 0.32 -5.92 16 23 C 0.14 3.46 2.80 -4.04 -0.01 3.45 16 24 C -0.13 -2.72 6.10 -27.89 -0.17 -2.89 16 25 C 0.47 9.61 7.96 36.00 0.29 9.90 16 26 O -0.52 -11.62 15.71 -18.74 -0.29 -11.92 16 27 O -0.36 -6.41 10.57 -39.27 -0.41 -6.82 16 28 C 0.03 0.46 10.56 101.05 1.07 1.53 16 29 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 30 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.85 7.73 -51.93 -0.40 0.45 16 33 H 0.09 0.89 7.90 -51.93 -0.41 0.48 16 34 H 0.08 0.71 5.93 -51.93 -0.31 0.41 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.07 1.24 7.97 -51.93 -0.41 0.83 16 42 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.07 1.72 4.94 -51.92 -0.26 1.46 16 44 H 0.07 1.79 7.35 -51.93 -0.38 1.41 16 45 H 0.12 2.73 6.49 -51.93 -0.34 2.40 16 46 H 0.11 2.25 8.14 -51.93 -0.42 1.83 16 47 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 48 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 49 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 LS Contribution 383.96 15.07 5.79 5.79 Total: -1.00 -33.33 383.96 -7.36 -40.69 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -7.88 Total: 5.93 kcal Atomic # 6 Polarization: 20.39 SS G_CDS: 0.35 Total: 20.73 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.05 Total: -44.58 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -1.18 Total: -44.78 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.49 Total: 16.21 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.33 -7.36 -40.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341782.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.315 kcal (2) G-P(sol) polarization free energy of solvation -33.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds