Wall clock time and date at job start Tue Mar 31 2020 22:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50701 * 109.46834 * 2 1 4 4 O 1.21285 * 120.00124 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99760 * 180.02562 * 3 2 1 6 6 C 1.46922 * 120.63232 * 5.18965 * 5 3 2 7 7 C 1.53192 * 108.77889 * 233.59248 * 6 5 3 8 8 C 1.53046 * 109.30894 * 305.36664 * 7 6 5 9 9 C 1.53039 * 109.54025 * 61.36529 * 8 7 6 10 10 C 1.46928 * 120.62874 * 185.17510 * 5 3 2 11 11 H 1.09004 * 109.58427 * 246.34128 * 10 5 3 12 12 C 1.50703 * 109.58686 * 6.62219 * 10 5 3 13 13 O 1.21294 * 119.99990 * 59.26107 * 12 10 5 14 14 N 1.34783 * 119.99862 * 239.26287 * 12 10 5 15 15 C 1.37102 * 119.99984 * 355.90117 * 14 12 10 16 16 H 1.07999 * 119.99900 * 43.91600 * 15 14 12 17 17 C 1.38944 * 119.99700 * 223.91635 * 15 14 12 18 18 N 1.31412 * 120.00267 * 207.21867 * 17 15 14 19 19 Si 1.86806 * 120.00039 * 27.22400 * 17 15 14 20 20 H 1.48506 * 109.46986 * 94.31029 * 19 17 15 21 21 H 1.48500 * 109.46953 * 214.30942 * 19 17 15 22 22 H 1.48493 * 109.47149 * 334.30938 * 19 17 15 23 23 C 1.46497 * 119.99550 * 175.89778 * 14 12 10 24 24 C 1.53002 * 109.47435 * 274.94560 * 23 14 12 25 25 C 1.50693 * 109.46971 * 176.97522 * 24 23 14 26 26 O 1.20818 * 120.00321 * 0.02562 * 25 24 23 27 27 O 1.34233 * 119.99692 * 179.72832 * 25 24 23 28 28 C 1.45199 * 117.00002 * 180.27648 * 27 25 24 29 29 H 1.09002 * 109.46820 * 299.99555 * 1 2 3 30 30 H 1.08999 * 109.47091 * 60.00055 * 1 2 3 31 31 H 1.08997 * 109.46791 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46820 * 240.00445 * 2 1 3 33 33 H 1.08999 * 109.47091 * 119.99945 * 2 1 3 34 34 H 1.08998 * 109.58683 * 353.37869 * 6 5 3 35 35 H 1.08999 * 109.58407 * 113.65860 * 6 5 3 36 36 H 1.08996 * 109.50102 * 65.31564 * 7 6 5 37 37 H 1.08995 * 109.49734 * 185.38736 * 7 6 5 38 38 H 1.08998 * 109.45925 * 181.38932 * 8 7 6 39 39 H 1.09007 * 109.46050 * 301.35686 * 8 7 6 40 40 H 1.08998 * 109.49681 * 178.68690 * 9 8 7 41 41 H 1.08996 * 109.49846 * 58.58484 * 9 8 7 42 42 H 0.96997 * 120.00264 * 180.02562 * 18 17 15 43 43 H 1.09008 * 109.46566 * 154.94674 * 23 14 12 44 44 H 1.08993 * 109.47314 * 34.95174 * 23 14 12 45 45 H 1.09000 * 109.46721 * 56.97607 * 24 23 14 46 46 H 1.09000 * 109.46871 * 296.97674 * 24 23 14 47 47 H 1.09009 * 109.47215 * 179.97438 * 28 27 25 48 48 H 1.08999 * 109.47122 * 300.00038 * 28 27 25 49 49 H 1.09004 * 109.47071 * 60.00063 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.3234 0.5661 -0.1154 7 6 5.3159 0.6574 1.0479 8 6 5.9495 2.0505 1.0645 9 6 4.8609 3.1055 1.2743 10 6 3.8633 3.0418 0.1135 11 1 4.3601 3.3265 -0.8141 12 6 2.7162 3.9818 0.3812 13 8 2.0258 3.8307 1.3670 14 7 2.4574 4.9902 -0.4748 15 6 3.2873 5.2125 -1.5432 16 1 3.6393 4.3809 -2.1356 17 6 3.6753 6.5075 -1.8638 18 7 3.9889 6.8118 -3.1031 19 14 3.7515 7.8162 -0.5329 20 1 5.1342 7.8977 0.0026 21 1 3.3650 9.1298 -1.1078 22 1 2.8158 7.4615 0.5642 23 6 1.2893 5.8487 -0.2635 24 6 0.0562 5.1960 -0.8916 25 6 -1.1584 6.0423 -0.6101 26 8 -1.0491 7.0630 0.0270 27 8 -2.3609 5.6652 -1.0724 28 6 -3.4854 6.5320 -0.7685 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 3.7973 -0.3875 -0.0729 35 1 4.8581 0.6465 -1.0619 36 1 4.7916 0.4851 1.9878 37 1 6.0942 -0.0952 0.9221 38 1 6.6743 2.1101 1.8764 39 1 6.4526 2.2319 0.1146 40 1 5.3157 4.0954 1.3093 41 1 4.3409 2.9101 2.2121 42 1 4.2602 7.7158 -3.3268 43 1 1.4630 6.8193 -0.7281 44 1 1.1249 5.9819 0.8057 45 1 -0.0861 4.2030 -0.4652 46 1 0.1988 5.1118 -1.9689 47 1 -4.3945 6.1125 -1.1996 48 1 -3.5996 6.6135 0.3125 49 1 -3.3064 7.5209 -1.1906 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871341782.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:25 Heat of formation + Delta-G solvation = -162.160679 kcal Electronic energy + Delta-G solvation = -32581.190142 eV Core-core repulsion = 28315.362974 eV Total energy + Delta-G solvation = -4265.827168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.90191 -41.53075 -39.71906 -38.26219 -37.69839 -36.73445 -34.25878 -34.08181 -33.37093 -32.79529 -31.69474 -28.81835 -27.22426 -26.73649 -25.69842 -24.97230 -23.90034 -21.98857 -21.57106 -21.03974 -19.95968 -18.94052 -18.74939 -18.07540 -17.83069 -17.63671 -17.36545 -17.04931 -16.42911 -16.31854 -15.82082 -15.46904 -15.30292 -15.13167 -14.97271 -14.59145 -14.56382 -14.46929 -14.37321 -14.06356 -13.85564 -13.75705 -13.47178 -13.16729 -13.01639 -12.92745 -12.89086 -12.68351 -12.53055 -12.30641 -12.09795 -11.96813 -11.92924 -11.88317 -11.78346 -11.67210 -11.66497 -11.51854 -11.09327 -10.36782 -10.21259 -9.56321 -9.44798 -8.56262 -6.15164 1.02865 1.19997 1.29577 1.42011 1.55261 1.85859 1.87536 2.21077 2.37054 2.72380 2.95051 3.71127 3.76730 3.91300 3.94252 4.02439 4.08127 4.12658 4.21231 4.24833 4.25658 4.26345 4.31551 4.38697 4.42442 4.46782 4.62138 4.64193 4.71384 4.77256 4.81704 4.90951 4.95632 4.97500 4.99880 5.10838 5.14032 5.17252 5.22539 5.23244 5.39382 5.46512 5.50633 5.66286 6.08111 6.30376 6.59628 6.61010 7.00742 7.43073 7.52409 7.96503 8.57345 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009224 B = 0.005600 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.961322 B = 4998.957451 C = 7207.776783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.126 4.126 3 C 0.481 3.519 4 O -0.547 6.547 5 N -0.607 5.607 6 C 0.102 3.898 7 C -0.128 4.128 8 C -0.112 4.112 9 C -0.115 4.115 10 C 0.134 3.866 11 H 0.092 0.908 12 C 0.515 3.485 13 O -0.602 6.602 14 N -0.477 5.477 15 C -0.343 4.343 16 H 0.081 0.919 17 C 0.052 3.948 18 N -0.880 5.880 19 Si 0.893 3.107 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.267 1.267 23 C 0.146 3.854 24 C -0.113 4.113 25 C 0.476 3.524 26 O -0.539 6.539 27 O -0.362 6.362 28 C 0.025 3.975 29 H 0.035 0.965 30 H 0.041 0.959 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.279 0.721 43 H 0.057 0.943 44 H 0.048 0.952 45 H 0.111 0.889 46 H 0.107 0.893 47 H 0.139 0.861 48 H 0.061 0.939 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.101 -15.206 3.507 15.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.165 4.165 3 C 0.271 3.729 4 O -0.424 6.424 5 N -0.343 5.343 6 C -0.019 4.019 7 C -0.166 4.166 8 C -0.150 4.150 9 C -0.154 4.154 10 C 0.028 3.972 11 H 0.110 0.890 12 C 0.306 3.694 13 O -0.485 6.485 14 N -0.200 5.200 15 C -0.470 4.470 16 H 0.099 0.901 17 C -0.155 4.155 18 N -0.515 5.515 19 Si 0.717 3.283 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.192 1.192 23 C 0.022 3.978 24 C -0.152 4.152 25 C 0.320 3.680 26 O -0.430 6.430 27 O -0.278 6.278 28 C -0.067 4.067 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.129 0.871 46 H 0.125 0.875 47 H 0.157 0.843 48 H 0.080 0.920 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.816 -14.339 4.018 15.002 hybrid contribution -0.064 1.736 0.382 1.779 sum -1.880 -12.603 4.400 13.481 Atomic orbital electron populations 1.21492 0.93799 1.02389 1.01271 1.21653 0.97815 0.91014 1.06058 1.21806 0.81896 0.93545 0.75694 1.90712 1.55541 1.46806 1.49339 1.48214 1.06254 1.06339 1.73471 1.22111 0.90812 0.89289 0.99682 1.21921 0.99078 0.97260 0.98328 1.21516 0.96333 0.93906 1.03216 1.21744 0.96460 1.00856 0.96375 1.21020 0.93209 0.82055 1.00950 0.88990 1.20417 0.84826 0.82414 0.81735 1.90500 1.52285 1.74692 1.31059 1.43492 1.21693 1.29908 1.24943 1.18692 1.27981 0.94045 1.06281 0.90119 1.25704 0.94773 0.98775 0.96238 1.69888 1.42502 1.21667 1.17472 0.86651 0.79363 0.79983 0.82280 1.19098 1.20447 1.19161 1.21042 0.85359 0.92848 0.98594 1.21634 0.88952 1.00183 1.04448 1.23823 0.85189 0.84108 0.74876 1.90601 1.86671 1.26680 1.39022 1.86521 1.17296 1.52766 1.71246 1.23619 0.86338 0.94502 1.02281 0.94601 0.93967 0.89102 0.86294 0.86850 0.86522 0.90292 0.91950 0.87180 0.89828 0.90984 0.92030 0.92758 0.91082 0.92470 0.93372 0.87109 0.87490 0.84308 0.92042 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.20 71.98 0.66 -2.44 16 2 C -0.13 -2.72 4.77 29.85 0.14 -2.58 16 3 C 0.48 16.61 7.39 87.66 0.65 17.26 16 4 O -0.55 -24.67 10.02 20.80 0.21 -24.47 16 5 N -0.61 -19.20 2.97 -799.18 -2.38 -21.57 16 6 C 0.10 1.94 6.35 86.36 0.55 2.49 16 7 C -0.13 -2.14 6.08 30.67 0.19 -1.95 16 8 C -0.11 -2.47 5.88 30.62 0.18 -2.29 16 9 C -0.12 -3.82 5.32 30.67 0.16 -3.66 16 10 C 0.13 5.27 3.00 44.23 0.13 5.40 16 11 H 0.09 3.85 5.78 -2.39 -0.01 3.84 16 12 C 0.51 25.27 4.26 87.66 0.37 25.65 16 13 O -0.60 -32.55 14.07 20.78 0.29 -32.26 16 14 N -0.48 -24.59 2.03 -635.53 -1.29 -25.88 16 15 C -0.34 -18.28 8.57 84.04 0.72 -17.56 16 16 H 0.08 4.50 6.89 -2.91 -0.02 4.48 16 17 C 0.05 2.78 5.11 84.92 0.43 3.21 16 18 N -0.88 -48.78 13.96 21.66 0.30 -48.48 16 19 Si 0.89 43.68 26.40 68.60 1.81 45.49 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.27 -13.72 5.67 99.48 0.56 -13.16 16 23 C 0.15 7.46 2.80 86.38 0.24 7.70 16 24 C -0.11 -5.16 6.10 29.85 0.18 -4.98 16 25 C 0.48 20.03 7.96 71.23 0.57 20.59 16 26 O -0.54 -24.93 15.71 21.99 0.35 -24.59 16 27 O -0.36 -12.66 10.57 -51.45 -0.54 -13.20 16 28 C 0.03 0.64 10.56 113.37 1.20 1.83 16 29 H 0.03 1.01 8.10 -2.39 -0.02 0.99 16 30 H 0.04 1.14 8.10 -2.39 -0.02 1.12 16 31 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.12 1.82 7.73 -2.39 -0.02 1.80 16 33 H 0.11 1.86 7.90 -2.39 -0.02 1.84 16 34 H 0.12 1.43 5.93 -2.39 -0.01 1.41 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.05 1.94 7.97 -2.39 -0.02 1.93 16 42 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.06 3.00 4.94 -2.38 -0.01 2.99 16 44 H 0.05 2.63 7.35 -2.39 -0.02 2.61 16 45 H 0.11 5.32 6.49 -2.39 -0.02 5.30 16 46 H 0.11 4.77 8.14 -2.39 -0.02 4.75 16 47 H 0.14 2.29 8.14 -2.38 -0.02 2.27 16 48 H 0.06 1.53 8.13 -2.39 -0.02 1.52 16 49 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 Total: -1.00 -77.49 383.96 5.93 -71.56 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.81 Total: 24.72 kcal Atomic # 6 Polarization: 42.31 SS G_CDS: 6.38 Total: 48.68 kcal Atomic # 7 Polarization: -92.57 SS G_CDS: -3.36 Total: -95.93 kcal Atomic # 8 Polarization: -94.82 SS G_CDS: 0.30 Total: -94.52 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.81 Total: 45.49 kcal Total: -77.49 5.93 -71.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341782.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.603 kcal (2) G-P(sol) polarization free energy of solvation -77.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds