Wall clock time and date at job start Tue Mar 31 2020 22:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.47278 * 2 1 4 4 O 1.21283 * 119.99869 * 359.97438 * 3 2 1 5 5 N 1.34778 * 120.00019 * 179.97438 * 3 2 1 6 6 C 1.46931 * 120.62926 * 4.51014 * 5 3 2 7 7 C 1.53192 * 108.77066 * 126.41070 * 6 5 3 8 8 C 1.53042 * 109.31279 * 54.63747 * 7 6 5 9 9 C 1.53070 * 109.65735 * 298.69263 * 8 7 6 10 10 C 1.46916 * 120.62747 * 184.53098 * 5 3 2 11 11 H 1.08999 * 109.58954 * 113.65959 * 10 5 3 12 12 C 1.50695 * 109.59324 * 353.37292 * 10 5 3 13 13 O 1.21294 * 120.00337 * 293.48784 * 12 10 5 14 14 N 1.34775 * 120.00014 * 113.47993 * 12 10 5 15 15 C 1.37092 * 120.00072 * 4.41348 * 14 12 10 16 16 H 1.08001 * 120.00261 * 322.28555 * 15 14 12 17 17 C 1.38958 * 120.00215 * 142.28080 * 15 14 12 18 18 N 1.31404 * 120.00297 * 163.00623 * 17 15 14 19 19 Si 1.86805 * 119.99622 * 343.00650 * 17 15 14 20 20 H 1.48499 * 109.47205 * 91.14458 * 19 17 15 21 21 H 1.48499 * 109.46671 * 211.15022 * 19 17 15 22 22 H 1.48502 * 109.46913 * 331.14487 * 19 17 15 23 23 C 1.46505 * 120.00162 * 184.41535 * 14 12 10 24 24 C 1.53002 * 109.47026 * 86.56111 * 23 14 12 25 25 C 1.50697 * 109.46922 * 180.02562 * 24 23 14 26 26 O 1.20819 * 120.00287 * 0.02562 * 25 24 23 27 27 O 1.34238 * 119.99870 * 179.72566 * 25 24 23 28 28 C 1.45198 * 116.99975 * 180.27884 * 27 25 24 29 29 H 1.08997 * 109.47107 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47209 * 300.00277 * 1 2 3 31 31 H 1.09001 * 109.46693 * 59.99749 * 1 2 3 32 32 H 1.08999 * 109.47338 * 240.00220 * 2 1 3 33 33 H 1.09002 * 109.47266 * 119.99752 * 2 1 3 34 34 H 1.09000 * 109.58251 * 246.19832 * 6 5 3 35 35 H 1.08997 * 109.58733 * 6.48355 * 6 5 3 36 36 H 1.09007 * 109.49132 * 174.58730 * 7 6 5 37 37 H 1.08999 * 109.50299 * 294.64564 * 7 6 5 38 38 H 1.08999 * 109.46128 * 58.65400 * 8 7 6 39 39 H 1.08999 * 109.45620 * 178.62248 * 8 7 6 40 40 H 1.09001 * 109.39317 * 301.28205 * 9 8 7 41 41 H 1.08999 * 109.62597 * 181.17005 * 9 8 7 42 42 H 0.97002 * 120.00125 * 180.02562 * 18 17 15 43 43 H 1.08994 * 109.46850 * 326.56668 * 23 14 12 44 44 H 1.08998 * 109.47236 * 206.56175 * 23 14 12 45 45 H 1.08998 * 109.47122 * 60.00134 * 24 23 14 46 46 H 1.08998 * 109.47165 * 300.00108 * 24 23 14 47 47 H 1.09004 * 109.46654 * 299.99664 * 28 27 25 48 48 H 1.08995 * 109.47461 * 59.99681 * 28 27 25 49 49 H 1.08996 * 109.47153 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3575 1.6671 0.0005 6 6 4.3238 0.5647 -0.0983 7 6 5.2802 0.8502 -1.2605 8 6 5.9166 2.2283 -1.0655 9 6 4.8266 3.3030 -1.0620 10 6 3.8631 3.0429 0.1004 11 1 4.3889 3.1713 1.0465 12 6 2.7107 4.0113 0.0275 13 8 2.0710 4.1168 -0.9976 14 7 2.3908 4.7600 1.1015 15 6 3.1679 4.7077 2.2297 16 1 3.5968 3.7686 2.5470 17 6 3.4038 5.8629 2.9651 18 7 3.8505 5.7772 4.1980 19 14 3.0859 7.5376 2.2011 20 1 1.6935 7.9605 2.4970 21 1 4.0354 8.5286 2.7682 22 1 3.2763 7.4550 0.7306 23 6 1.2125 5.6299 1.0634 24 6 -0.0248 4.8310 1.4777 25 6 -1.2368 5.7256 1.4379 26 8 -1.1229 6.8831 1.1112 27 8 -2.4441 5.2347 1.7596 28 6 -3.5677 6.1520 1.6931 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.8893 0.4902 0.8305 35 1 3.7940 -0.3705 -0.2796 36 1 6.0603 0.0892 -1.2849 37 1 4.7268 0.8340 -2.1995 38 1 6.4493 2.2510 -0.1148 39 1 6.6160 2.4235 -1.8783 40 1 4.2789 3.2661 -2.0036 41 1 5.2822 4.2861 -0.9438 42 1 4.0148 6.5836 4.7114 43 1 1.0760 6.0124 0.0520 44 1 1.3539 6.4635 1.7512 45 1 0.1117 4.4483 2.4892 46 1 -0.1662 3.9973 0.7899 47 1 -3.3982 6.9842 2.3764 48 1 -3.6673 6.5315 0.6762 49 1 -4.4809 5.6292 1.9773 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871341783.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:29 Heat of formation + Delta-G solvation = -137.501929 kcal Electronic energy + Delta-G solvation = -32664.011602 eV Core-core repulsion = 28399.253718 eV Total energy + Delta-G solvation = -4264.757884 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.41702 -40.00423 -38.06871 -37.03018 -36.16242 -34.86615 -32.91306 -32.32790 -32.12129 -31.22084 -30.29543 -27.55706 -25.95800 -24.78729 -24.26606 -23.93124 -22.58879 -20.55694 -20.30583 -19.32952 -18.46081 -17.36824 -17.22480 -16.42507 -16.30570 -16.10178 -15.88007 -15.54093 -15.26882 -14.74749 -14.34582 -14.10104 -13.80204 -13.73437 -13.63977 -13.32846 -13.22067 -12.95865 -12.70840 -12.54275 -12.33945 -12.30440 -11.93501 -11.86877 -11.75499 -11.54063 -11.52788 -11.19675 -11.03653 -11.00825 -10.80982 -10.73010 -10.56684 -10.53359 -10.44984 -10.08476 -9.98066 -9.68784 -9.13808 -8.85460 -8.41079 -8.13871 -7.67906 -6.42416 -4.04959 2.66927 3.01275 3.11433 3.16120 3.23459 3.30881 3.39012 4.13244 4.19572 4.38059 4.82747 4.84925 4.95382 5.00923 5.13444 5.20323 5.24684 5.25363 5.31032 5.31847 5.42066 5.49775 5.54887 5.64347 5.70185 5.77808 5.81415 5.87505 5.90261 5.96502 5.97953 6.08174 6.10635 6.21624 6.25085 6.26977 6.30254 6.39042 6.57238 6.66151 6.67614 6.81749 6.93938 7.43895 7.80803 8.10839 8.16580 8.30391 8.70263 9.04228 9.45619 9.85441 10.67715 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009739 B = 0.005454 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.460099 B = 5132.308713 C = 7058.099375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 C 0.500 3.500 4 O -0.493 6.493 5 N -0.604 5.604 6 C 0.111 3.889 7 C -0.134 4.134 8 C -0.117 4.117 9 C -0.119 4.119 10 C 0.131 3.869 11 H 0.107 0.893 12 C 0.518 3.482 13 O -0.574 6.574 14 N -0.469 5.469 15 C -0.343 4.343 16 H 0.103 0.897 17 C 0.067 3.933 18 N -0.867 5.867 19 Si 0.875 3.125 20 H -0.269 1.269 21 H -0.291 1.291 22 H -0.262 1.262 23 C 0.125 3.875 24 C -0.122 4.122 25 C 0.467 3.533 26 O -0.515 6.515 27 O -0.362 6.362 28 C 0.035 3.965 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.274 0.726 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.107 0.893 46 H 0.122 0.878 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.696 -11.422 -5.704 12.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.179 4.179 3 C 0.287 3.713 4 O -0.366 6.366 5 N -0.340 5.340 6 C -0.012 4.012 7 C -0.172 4.172 8 C -0.155 4.155 9 C -0.158 4.158 10 C 0.026 3.974 11 H 0.125 0.875 12 C 0.308 3.692 13 O -0.456 6.456 14 N -0.192 5.192 15 C -0.470 4.470 16 H 0.120 0.880 17 C -0.140 4.140 18 N -0.502 5.502 19 Si 0.703 3.297 20 H -0.196 1.196 21 H -0.218 1.218 22 H -0.186 1.186 23 C 0.001 3.999 24 C -0.161 4.161 25 C 0.311 3.689 26 O -0.403 6.403 27 O -0.279 6.279 28 C -0.060 4.060 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.125 0.875 46 H 0.140 0.860 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.396 -10.403 -6.131 12.310 hybrid contribution -0.097 1.020 -0.015 1.025 sum -2.493 -9.383 -6.145 11.490 Atomic orbital electron populations 1.21514 0.93259 1.00945 1.03550 1.21617 0.98407 0.94464 1.03370 1.20739 0.82022 0.91730 0.76764 1.90763 1.54091 1.44612 1.47134 1.47997 1.05445 1.06357 1.74209 1.21685 0.91272 0.89472 0.98793 1.21911 0.98701 0.97815 0.98798 1.21507 0.97606 0.94234 1.02137 1.21770 0.96117 0.99096 0.98823 1.21259 0.94892 0.80689 1.00583 0.87496 1.19546 0.84128 0.82484 0.83072 1.90531 1.53826 1.69885 1.31327 1.43464 1.21875 1.40960 1.12912 1.19014 1.29681 0.96467 1.01805 0.88000 1.25317 0.95253 0.98510 0.94906 1.69705 1.43113 1.30067 1.07346 0.87014 0.77723 0.83843 0.81093 1.19560 1.21800 1.18574 1.21274 0.84390 0.92562 1.01660 1.21852 0.88642 0.99367 1.06209 1.24224 0.84478 0.87970 0.72262 1.90622 1.86185 1.19292 1.44220 1.86553 1.17113 1.43865 1.80404 1.23174 0.86794 0.93685 1.02305 0.92650 0.91840 0.92041 0.89703 0.89394 0.91282 0.89979 0.91002 0.91610 0.91485 0.91808 0.91021 0.90667 0.91556 0.90847 0.91131 0.87512 0.85970 0.92206 0.92208 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.20 37.16 0.34 -1.33 16 2 C -0.14 -1.68 4.81 -27.88 -0.13 -1.82 16 3 C 0.50 8.71 7.57 -10.98 -0.08 8.63 16 4 O -0.49 -10.67 9.86 -19.22 -0.19 -10.86 16 5 N -0.60 -9.84 2.97 -166.53 -0.50 -10.33 16 6 C 0.11 1.25 6.33 -3.71 -0.02 1.23 16 7 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 8 C -0.12 -1.42 5.88 -26.67 -0.16 -1.58 16 9 C -0.12 -1.97 5.30 -26.59 -0.14 -2.11 16 10 C 0.13 2.53 2.97 -68.75 -0.20 2.33 16 11 H 0.11 2.17 5.74 -51.93 -0.30 1.87 16 12 C 0.52 12.26 4.15 -10.99 -0.05 12.22 16 13 O -0.57 -14.89 14.16 -19.23 -0.27 -15.16 16 14 N -0.47 -11.66 2.21 -114.81 -0.25 -11.91 16 15 C -0.34 -8.89 8.88 -14.93 -0.13 -9.02 16 16 H 0.10 2.72 6.70 -52.49 -0.35 2.37 16 17 C 0.07 1.79 5.37 -17.47 -0.09 1.69 16 18 N -0.87 -23.91 13.96 55.50 0.77 -23.14 16 19 Si 0.87 21.75 24.84 -169.99 -4.22 17.53 16 20 H -0.27 -6.77 6.56 56.52 0.37 -6.40 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.26 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.12 3.06 3.33 -4.04 -0.01 3.05 16 24 C -0.12 -2.66 6.12 -27.88 -0.17 -2.83 16 25 C 0.47 9.67 7.96 36.00 0.29 9.95 16 26 O -0.52 -11.77 15.73 -18.74 -0.29 -12.06 16 27 O -0.36 -6.40 10.57 -39.28 -0.42 -6.82 16 28 C 0.03 0.46 10.56 101.05 1.07 1.53 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 32 H 0.08 0.84 7.51 -51.93 -0.39 0.45 16 33 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.72 5.96 -51.93 -0.31 0.41 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 1.28 7.85 -51.93 -0.41 0.87 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.07 1.88 7.43 -51.93 -0.39 1.50 16 44 H 0.07 1.81 2.89 -51.93 -0.15 1.66 16 45 H 0.11 2.29 8.14 -51.93 -0.42 1.86 16 46 H 0.12 2.74 6.40 -51.93 -0.33 2.41 16 47 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 48 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 49 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 382.18 15.07 5.76 5.76 Total: -1.00 -33.77 382.18 -6.98 -40.75 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -7.70 Total: 5.84 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: 0.33 Total: 20.40 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.03 Total: -45.38 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -1.17 Total: -44.90 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.22 Total: 17.53 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.77 -6.98 -40.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341783.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.755 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds