Wall clock time and date at job start Tue Mar 31 2020 22:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.47278 * 2 1 4 4 O 1.21283 * 119.99869 * 359.97438 * 3 2 1 5 5 N 1.34778 * 120.00019 * 179.97438 * 3 2 1 6 6 C 1.46931 * 120.62926 * 4.51014 * 5 3 2 7 7 C 1.53192 * 108.77066 * 126.41070 * 6 5 3 8 8 C 1.53042 * 109.31279 * 54.63747 * 7 6 5 9 9 C 1.53070 * 109.65735 * 298.69263 * 8 7 6 10 10 C 1.46916 * 120.62747 * 184.53098 * 5 3 2 11 11 H 1.08999 * 109.58954 * 113.65959 * 10 5 3 12 12 C 1.50695 * 109.59324 * 353.37292 * 10 5 3 13 13 O 1.21294 * 120.00337 * 293.48784 * 12 10 5 14 14 N 1.34775 * 120.00014 * 113.47993 * 12 10 5 15 15 C 1.37092 * 120.00072 * 4.41348 * 14 12 10 16 16 H 1.08001 * 120.00261 * 322.28555 * 15 14 12 17 17 C 1.38958 * 120.00215 * 142.28080 * 15 14 12 18 18 N 1.31404 * 120.00297 * 163.00623 * 17 15 14 19 19 Si 1.86805 * 119.99622 * 343.00650 * 17 15 14 20 20 H 1.48499 * 109.47205 * 91.14458 * 19 17 15 21 21 H 1.48499 * 109.46671 * 211.15022 * 19 17 15 22 22 H 1.48502 * 109.46913 * 331.14487 * 19 17 15 23 23 C 1.46505 * 120.00162 * 184.41535 * 14 12 10 24 24 C 1.53002 * 109.47026 * 86.56111 * 23 14 12 25 25 C 1.50697 * 109.46922 * 180.02562 * 24 23 14 26 26 O 1.20819 * 120.00287 * 0.02562 * 25 24 23 27 27 O 1.34238 * 119.99870 * 179.72566 * 25 24 23 28 28 C 1.45198 * 116.99975 * 180.27884 * 27 25 24 29 29 H 1.08997 * 109.47107 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47209 * 300.00277 * 1 2 3 31 31 H 1.09001 * 109.46693 * 59.99749 * 1 2 3 32 32 H 1.08999 * 109.47338 * 240.00220 * 2 1 3 33 33 H 1.09002 * 109.47266 * 119.99752 * 2 1 3 34 34 H 1.09000 * 109.58251 * 246.19832 * 6 5 3 35 35 H 1.08997 * 109.58733 * 6.48355 * 6 5 3 36 36 H 1.09007 * 109.49132 * 174.58730 * 7 6 5 37 37 H 1.08999 * 109.50299 * 294.64564 * 7 6 5 38 38 H 1.08999 * 109.46128 * 58.65400 * 8 7 6 39 39 H 1.08999 * 109.45620 * 178.62248 * 8 7 6 40 40 H 1.09001 * 109.39317 * 301.28205 * 9 8 7 41 41 H 1.08999 * 109.62597 * 181.17005 * 9 8 7 42 42 H 0.97002 * 120.00125 * 180.02562 * 18 17 15 43 43 H 1.08994 * 109.46850 * 326.56668 * 23 14 12 44 44 H 1.08998 * 109.47236 * 206.56175 * 23 14 12 45 45 H 1.08998 * 109.47122 * 60.00134 * 24 23 14 46 46 H 1.08998 * 109.47165 * 300.00108 * 24 23 14 47 47 H 1.09004 * 109.46654 * 299.99664 * 28 27 25 48 48 H 1.08995 * 109.47461 * 59.99681 * 28 27 25 49 49 H 1.08996 * 109.47153 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3575 1.6671 0.0005 6 6 4.3238 0.5647 -0.0983 7 6 5.2802 0.8502 -1.2605 8 6 5.9166 2.2283 -1.0655 9 6 4.8266 3.3030 -1.0620 10 6 3.8631 3.0429 0.1004 11 1 4.3889 3.1713 1.0465 12 6 2.7107 4.0113 0.0275 13 8 2.0710 4.1168 -0.9976 14 7 2.3908 4.7600 1.1015 15 6 3.1679 4.7077 2.2297 16 1 3.5968 3.7686 2.5470 17 6 3.4038 5.8629 2.9651 18 7 3.8505 5.7772 4.1980 19 14 3.0859 7.5376 2.2011 20 1 1.6935 7.9605 2.4970 21 1 4.0354 8.5286 2.7682 22 1 3.2763 7.4550 0.7306 23 6 1.2125 5.6299 1.0634 24 6 -0.0248 4.8310 1.4777 25 6 -1.2368 5.7256 1.4379 26 8 -1.1229 6.8831 1.1112 27 8 -2.4441 5.2347 1.7596 28 6 -3.5677 6.1520 1.6931 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.8893 0.4902 0.8305 35 1 3.7940 -0.3705 -0.2796 36 1 6.0603 0.0892 -1.2849 37 1 4.7268 0.8340 -2.1995 38 1 6.4493 2.2510 -0.1148 39 1 6.6160 2.4235 -1.8783 40 1 4.2789 3.2661 -2.0036 41 1 5.2822 4.2861 -0.9438 42 1 4.0148 6.5836 4.7114 43 1 1.0760 6.0124 0.0520 44 1 1.3539 6.4635 1.7512 45 1 0.1117 4.4483 2.4892 46 1 -0.1662 3.9973 0.7899 47 1 -3.3982 6.9842 2.3764 48 1 -3.6673 6.5315 0.6762 49 1 -4.4809 5.6292 1.9773 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871341783.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:28 Heat of formation + Delta-G solvation = -158.475441 kcal Electronic energy + Delta-G solvation = -32664.921082 eV Core-core repulsion = 28399.253718 eV Total energy + Delta-G solvation = -4265.667364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.93654 -41.55963 -39.76601 -38.27831 -37.73269 -36.80774 -34.25132 -34.09241 -33.40057 -32.79981 -31.72383 -28.85661 -27.26283 -26.77181 -25.78682 -24.98104 -23.94032 -22.04114 -21.59559 -21.03792 -19.96034 -18.97549 -18.75583 -18.26361 -17.90279 -17.65304 -17.35990 -17.08696 -16.50648 -16.40266 -15.80055 -15.51113 -15.34219 -15.14949 -14.98416 -14.59304 -14.57274 -14.47728 -14.34846 -14.14388 -13.82638 -13.79615 -13.49367 -13.30962 -13.05820 -12.96376 -12.92706 -12.74857 -12.52598 -12.33522 -12.10230 -11.98640 -11.92089 -11.88678 -11.76368 -11.67932 -11.63673 -11.52197 -11.12061 -10.37373 -10.21832 -9.69732 -9.46835 -8.52766 -6.14461 0.99123 1.14942 1.24893 1.34778 1.51411 1.78380 1.88049 2.12955 2.40326 2.67873 2.96712 3.66983 3.72007 3.84248 3.90991 4.01113 4.05365 4.07773 4.19314 4.23849 4.24510 4.25454 4.31561 4.33374 4.36953 4.41753 4.60478 4.62837 4.68832 4.72692 4.80604 4.83700 4.95244 4.96308 5.00498 5.11175 5.13945 5.17053 5.18998 5.22952 5.39992 5.42090 5.50171 5.64946 6.01786 6.28243 6.56137 6.59001 6.96827 7.40579 7.48508 7.93107 8.60740 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009739 B = 0.005454 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.460099 B = 5132.308713 C = 7058.099375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.126 4.126 3 C 0.480 3.520 4 O -0.546 6.546 5 N -0.604 5.604 6 C 0.102 3.898 7 C -0.128 4.128 8 C -0.112 4.112 9 C -0.116 4.116 10 C 0.134 3.866 11 H 0.094 0.906 12 C 0.516 3.484 13 O -0.601 6.601 14 N -0.482 5.482 15 C -0.329 4.329 16 H 0.092 0.908 17 C 0.040 3.960 18 N -0.893 5.893 19 Si 0.913 3.087 20 H -0.276 1.276 21 H -0.278 1.278 22 H -0.276 1.276 23 C 0.126 3.874 24 C -0.110 4.110 25 C 0.474 3.526 26 O -0.541 6.541 27 O -0.360 6.360 28 C 0.025 3.975 29 H 0.090 0.910 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.279 0.721 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.108 0.892 46 H 0.115 0.885 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.294 -14.227 -6.010 15.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 C 0.269 3.731 4 O -0.423 6.423 5 N -0.340 5.340 6 C -0.019 4.019 7 C -0.166 4.166 8 C -0.149 4.149 9 C -0.154 4.154 10 C 0.027 3.973 11 H 0.111 0.889 12 C 0.308 3.692 13 O -0.485 6.485 14 N -0.205 5.205 15 C -0.457 4.457 16 H 0.109 0.891 17 C -0.164 4.164 18 N -0.530 5.530 19 Si 0.741 3.259 20 H -0.204 1.204 21 H -0.204 1.204 22 H -0.201 1.201 23 C 0.002 3.998 24 C -0.149 4.149 25 C 0.318 3.682 26 O -0.431 6.431 27 O -0.276 6.276 28 C -0.068 4.068 29 H 0.109 0.891 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.098 0.902 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.126 0.874 46 H 0.133 0.867 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.969 -13.253 -6.430 14.861 hybrid contribution -0.322 1.845 0.029 1.873 sum -2.292 -11.408 -6.401 13.280 Atomic orbital electron populations 1.21497 0.93721 1.02436 1.01340 1.21665 0.97872 0.90909 1.06118 1.21877 0.81931 0.93634 0.75609 1.90731 1.55358 1.46570 1.49639 1.48230 1.06300 1.06041 1.73467 1.22125 0.90979 0.88915 0.99903 1.21918 0.99304 0.97413 0.97962 1.21517 0.96299 0.93821 1.03303 1.21759 0.96703 1.00475 0.96510 1.21062 0.93255 0.81923 1.01054 0.88875 1.20294 0.84635 0.82196 0.82118 1.90494 1.55102 1.70590 1.32312 1.43595 1.22163 1.41551 1.13208 1.18915 1.29085 0.95935 1.01749 0.89052 1.25621 0.95644 1.00017 0.95157 1.69728 1.44587 1.30777 1.07923 0.86418 0.77367 0.82391 0.79675 1.20354 1.20397 1.20082 1.21144 0.85799 0.92772 1.00099 1.21579 0.88601 0.98862 1.05855 1.23847 0.85293 0.87136 0.71878 1.90607 1.86766 1.20169 1.45563 1.86519 1.16903 1.44739 1.79480 1.23629 0.86372 0.93957 1.02819 0.89118 0.94135 0.94273 0.86463 0.86589 0.90159 0.86500 0.87112 0.92133 0.90900 0.89847 0.92846 0.92010 0.91093 0.92818 0.92296 0.87381 0.86664 0.91979 0.91961 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.20 71.98 0.66 -2.40 16 2 C -0.13 -2.69 4.81 29.85 0.14 -2.55 16 3 C 0.48 16.41 7.57 87.66 0.66 17.08 16 4 O -0.55 -24.36 9.86 20.65 0.20 -24.15 16 5 N -0.60 -19.02 2.97 -799.18 -2.38 -21.40 16 6 C 0.10 1.92 6.33 86.36 0.55 2.47 16 7 C -0.13 -2.15 6.08 30.67 0.19 -1.97 16 8 C -0.11 -2.45 5.88 30.63 0.18 -2.27 16 9 C -0.12 -3.83 5.30 30.69 0.16 -3.66 16 10 C 0.13 5.23 2.97 44.23 0.13 5.36 16 11 H 0.09 3.87 5.74 -2.39 -0.01 3.86 16 12 C 0.52 25.42 4.15 87.66 0.36 25.78 16 13 O -0.60 -32.71 14.16 20.61 0.29 -32.41 16 14 N -0.48 -24.92 2.21 -635.53 -1.40 -26.32 16 15 C -0.33 -17.61 8.88 84.04 0.75 -16.86 16 16 H 0.09 5.03 6.70 -2.91 -0.02 5.01 16 17 C 0.04 2.18 5.37 84.93 0.46 2.64 16 18 N -0.89 -49.82 13.96 21.66 0.30 -49.52 16 19 Si 0.91 45.99 24.84 68.60 1.70 47.69 16 20 H -0.28 -14.17 6.56 99.48 0.65 -13.51 16 21 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 22 H -0.28 -14.38 7.11 99.48 0.71 -13.67 16 23 C 0.13 6.46 3.33 86.38 0.29 6.75 16 24 C -0.11 -5.01 6.12 29.85 0.18 -4.83 16 25 C 0.47 20.04 7.96 71.23 0.57 20.61 16 26 O -0.54 -25.28 15.73 21.99 0.35 -24.93 16 27 O -0.36 -12.55 10.57 -51.49 -0.54 -13.09 16 28 C 0.02 0.63 10.56 113.37 1.20 1.82 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.04 1.10 8.10 -2.39 -0.02 1.08 16 31 H 0.04 1.06 8.10 -2.39 -0.02 1.04 16 32 H 0.12 1.78 7.51 -2.39 -0.02 1.77 16 33 H 0.12 1.88 8.09 -2.39 -0.02 1.86 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.12 1.42 5.96 -2.39 -0.01 1.41 16 36 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.05 1.94 7.85 -2.39 -0.02 1.92 16 41 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.28 14.66 8.31 -92.71 -0.77 13.89 16 43 H 0.05 2.92 7.43 -2.39 -0.02 2.90 16 44 H 0.06 3.15 2.89 -2.39 -0.01 3.14 16 45 H 0.11 4.81 8.14 -2.39 -0.02 4.79 16 46 H 0.12 5.44 6.40 -2.39 -0.02 5.43 16 47 H 0.06 1.55 8.13 -2.38 -0.02 1.53 16 48 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 49 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -78.25 382.18 5.90 -72.35 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.90 Total: 23.83 kcal Atomic # 6 Polarization: 41.48 SS G_CDS: 6.48 Total: 47.96 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -3.48 Total: -97.24 kcal Atomic # 8 Polarization: -94.89 SS G_CDS: 0.30 Total: -94.60 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.70 Total: 47.69 kcal Total: -78.25 5.90 -72.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341783.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.124 kcal (2) G-P(sol) polarization free energy of solvation -78.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds