Wall clock time and date at job start Wed Apr 1 2020 00:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47290 * 2 1 4 4 C 1.46504 * 119.99678 * 270.00152 * 3 2 1 5 5 C 1.50703 * 109.47300 * 269.99852 * 4 3 2 6 6 H 1.07995 * 119.99828 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00046 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99989 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00081 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47391 * 89.99583 * 9 7 5 11 11 H 1.48505 * 109.47154 * 209.99956 * 9 7 5 12 12 H 1.48500 * 109.47074 * 329.99630 * 9 7 5 13 13 C 1.34771 * 120.00220 * 90.00200 * 3 2 1 14 14 O 1.21283 * 120.00171 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99744 * 0.02562 * 13 3 2 16 16 O 1.45198 * 109.47053 * 180.02562 * 15 13 3 17 17 C 1.34228 * 117.00239 * 179.97438 * 16 15 13 18 18 O 1.20824 * 119.99829 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00168 * 179.97438 * 17 16 15 20 20 H 1.09008 * 110.21252 * 58.07581 * 19 17 16 21 21 C 1.54473 * 110.32561 * 296.09398 * 19 17 16 22 22 C 1.54628 * 101.76771 * 215.54350 * 21 19 17 23 23 C 1.51282 * 104.25605 * 24.58056 * 22 21 19 24 24 O 1.21283 * 124.94813 * 164.00886 * 23 22 21 25 25 N 1.34424 * 110.11177 * 344.14192 * 23 22 21 26 26 C 1.46500 * 124.34682 * 179.43991 * 25 23 22 27 27 C 1.52997 * 109.47473 * 59.70181 * 26 25 23 28 28 C 1.53006 * 109.47249 * 299.69883 * 26 25 23 29 29 H 1.09000 * 109.47514 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46729 * 299.99870 * 1 2 3 31 31 H 1.08992 * 109.47529 * 59.99716 * 1 2 3 32 32 H 1.09003 * 109.47138 * 240.00069 * 2 1 3 33 33 H 1.08999 * 109.47559 * 120.00682 * 2 1 3 34 34 H 1.08995 * 109.47190 * 30.00312 * 4 3 2 35 35 H 1.09002 * 109.46554 * 150.00194 * 4 3 2 36 36 H 0.96993 * 120.00318 * 180.02562 * 8 7 5 37 37 H 1.08994 * 109.47258 * 59.99750 * 15 13 3 38 38 H 1.09000 * 109.47132 * 299.99850 * 15 13 3 39 39 H 1.09002 * 110.96571 * 333.66506 * 21 19 17 40 40 H 1.09005 * 110.97453 * 97.38563 * 21 19 17 41 41 H 1.09005 * 110.48362 * 143.47232 * 22 21 19 42 42 H 1.09001 * 110.48601 * 265.98253 * 22 21 19 43 43 H 1.08998 * 109.46845 * 179.70731 * 26 25 23 44 44 H 1.09002 * 109.47153 * 59.99757 * 27 26 25 45 45 H 1.09001 * 109.46832 * 299.99948 * 27 26 25 46 46 H 1.09004 * 109.47261 * 179.97438 * 27 26 25 47 47 H 1.08993 * 109.46955 * 180.02562 * 28 26 25 48 48 H 1.09000 * 109.47050 * 300.00351 * 28 26 25 49 49 H 1.09001 * 109.47002 * 60.00085 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7039 6 1 4.3426 1.2302 -1.0964 7 6 4.1493 2.3904 -2.8776 8 7 3.3492 3.1264 -3.6178 9 14 5.9132 2.0963 -3.4173 10 1 5.9759 0.8757 -4.2608 11 1 6.3927 3.2639 -4.1997 12 1 6.7735 1.9155 -2.2204 13 6 2.2430 2.0165 1.1671 14 8 2.6478 3.1598 1.1671 15 6 1.9924 1.3059 2.4723 16 8 2.3063 2.1957 3.5759 17 6 2.1352 1.7121 4.8163 18 8 1.7368 0.5825 4.9746 19 6 2.4411 2.5776 6.0113 20 1 1.8420 3.4878 5.9804 21 6 3.9450 2.9285 6.0488 22 6 4.2304 2.9310 7.5685 23 6 3.1636 2.0294 8.1495 24 8 3.1926 1.5458 9.2613 25 7 2.1801 1.8399 7.2529 26 6 0.9968 1.0087 7.4874 27 6 0.2230 1.5507 8.6909 28 6 1.4322 -0.4312 7.7674 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.5816 1.6877 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 3.6752 3.5169 -4.4437 37 1 2.6229 0.4187 2.5298 38 1 0.9446 1.0114 2.5302 39 1 4.5362 2.1658 5.5421 40 1 4.1271 3.9120 5.6155 41 1 5.2239 2.5305 7.7707 42 1 4.1370 3.9391 7.9726 43 1 0.3574 1.0297 6.6049 44 1 -0.0872 2.5764 8.4914 45 1 0.8625 1.5296 9.5733 46 1 -0.6577 0.9324 8.8650 47 1 0.5517 -1.0496 7.9414 48 1 1.9834 -0.8173 6.9099 49 1 2.0717 -0.4523 8.6498 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873433465.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:00 Heat of formation + Delta-G solvation = -147.702255 kcal Electronic energy + Delta-G solvation = -30671.004997 eV Core-core repulsion = 26405.804794 eV Total energy + Delta-G solvation = -4265.200204 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.54657 -40.16393 -38.98998 -36.97808 -36.26529 -35.41655 -35.25964 -32.89870 -30.41095 -30.27913 -29.86841 -28.45039 -27.34446 -26.50687 -23.48669 -23.13840 -22.72392 -22.60894 -21.31418 -19.19871 -18.69913 -18.21614 -17.34454 -16.94853 -16.67223 -16.40847 -16.29940 -15.79698 -15.50075 -15.00381 -14.77546 -14.33467 -14.31367 -14.12247 -13.88441 -13.58235 -13.44634 -13.33927 -13.14674 -12.97945 -12.65560 -12.36074 -12.24559 -12.16421 -12.12465 -12.09337 -11.71319 -11.49343 -11.47752 -11.34288 -11.27218 -11.00666 -10.94305 -10.72352 -10.68376 -10.58892 -10.20014 -9.86096 -9.72081 -9.17005 -9.05934 -8.49874 -7.83090 -6.11006 -4.16159 1.85523 1.97120 2.34430 2.68323 3.15661 3.26229 3.33363 3.37571 3.69667 3.86580 4.02915 4.35866 4.40940 4.49082 4.64201 4.73908 4.76480 4.83608 5.02221 5.03678 5.08018 5.10522 5.23785 5.27834 5.31024 5.40346 5.47138 5.49013 5.51081 5.52151 5.59333 5.65404 5.75256 5.91749 5.92160 6.06683 6.12391 6.20428 6.33191 6.37625 6.76852 6.92238 7.32674 7.38590 7.47048 7.84646 7.85724 8.14325 8.21661 8.76930 8.92159 9.49138 10.97181 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017217 B = 0.002520 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.953910 B =11109.282285 C =12086.544524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.518 6.518 15 C 0.050 3.950 16 O -0.323 6.323 17 C 0.453 3.547 18 O -0.496 6.496 19 C 0.142 3.858 20 H 0.123 0.877 21 C -0.119 4.119 22 C -0.156 4.156 23 C 0.524 3.476 24 O -0.522 6.522 25 N -0.599 5.599 26 C 0.156 3.844 27 C -0.169 4.169 28 C -0.160 4.160 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.093 0.907 44 H 0.055 0.945 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.387 -3.879 20.039 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.394 6.394 15 C -0.027 4.027 16 O -0.237 6.237 17 C 0.294 3.706 18 O -0.383 6.383 19 C 0.036 3.964 20 H 0.141 0.859 21 C -0.157 4.157 22 C -0.196 4.196 23 C 0.312 3.688 24 O -0.398 6.398 25 N -0.335 5.335 26 C 0.055 3.945 27 C -0.227 4.227 28 C -0.218 4.218 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.111 0.889 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.355 -3.808 20.455 21.484 hybrid contribution 0.752 -0.444 -0.693 1.115 sum -4.603 -4.252 19.762 20.731 Atomic orbital electron populations 1.22231 0.96491 1.01727 1.02409 1.21513 0.93773 0.83936 1.03047 1.48219 1.63706 1.13397 1.07150 1.19343 0.96518 0.93708 0.77502 1.21411 0.96822 1.32132 1.06434 0.92400 1.24931 0.97943 0.94812 0.96345 1.69925 1.35752 1.33265 1.14316 0.86483 0.84524 0.77718 0.78623 1.20626 1.21036 1.19857 1.19671 0.79822 0.87163 0.84240 1.90721 1.44498 1.17460 1.86706 1.23016 1.02766 0.92619 0.84299 1.86549 1.78226 1.44913 1.13978 1.23756 0.74796 0.87093 0.84931 1.90677 1.41708 1.19508 1.86410 1.21192 1.00238 0.93865 0.81092 0.85926 1.22629 0.91274 1.05456 0.96293 1.22436 1.00024 1.01777 0.95395 1.20803 0.82750 0.80739 0.84536 1.90709 1.77801 1.51927 1.19351 1.48310 1.22702 1.48736 1.13743 1.21014 0.84792 0.90032 0.98700 1.22229 1.00396 1.01064 0.98971 1.22094 1.02136 0.94764 1.02813 0.91875 0.93184 0.91736 0.89369 0.91799 0.94619 0.93664 0.92624 0.88596 0.88678 0.89135 0.87003 0.87371 0.87129 0.88944 0.92596 0.91034 0.91362 0.91820 0.91493 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.10 1.51 5.93 -4.04 -0.02 1.48 16 3 N -0.59 -11.76 2.46 -175.06 -0.43 -12.19 16 4 C 0.25 6.18 5.16 -5.19 -0.03 6.15 16 5 C -0.53 -14.47 9.39 -34.44 -0.32 -14.80 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 9 Si 0.90 21.30 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 13 C 0.51 10.02 7.75 -10.99 -0.09 9.94 16 14 O -0.52 -12.56 16.08 -14.10 -0.23 -12.78 16 15 C 0.05 0.74 4.50 36.01 0.16 0.90 16 16 O -0.32 -4.61 9.75 -45.90 -0.45 -5.06 16 17 C 0.45 5.39 6.93 36.00 0.25 5.64 16 18 O -0.50 -6.56 12.70 -18.75 -0.24 -6.79 16 19 C 0.14 1.27 3.80 -68.17 -0.26 1.01 16 20 H 0.12 0.84 8.14 -51.92 -0.42 0.42 16 21 C -0.12 -0.86 6.68 -25.10 -0.17 -1.03 16 22 C -0.16 -1.09 6.86 -26.74 -0.18 -1.28 16 23 C 0.52 5.58 7.41 -10.86 -0.08 5.50 16 24 O -0.52 -7.22 15.12 5.56 0.08 -7.14 16 25 N -0.60 -6.01 2.58 -158.68 -0.41 -6.42 16 26 C 0.16 1.58 2.38 -67.93 -0.16 1.42 16 27 C -0.17 -1.50 9.19 37.16 0.34 -1.16 16 28 C -0.16 -1.71 9.04 37.16 0.34 -1.38 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.59 7.22 -51.92 -0.38 0.21 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 33 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 34 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 35 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.10 1.28 7.39 -51.93 -0.38 0.89 16 38 H 0.10 1.20 7.18 -51.93 -0.37 0.83 16 39 H 0.09 0.73 7.91 -51.93 -0.41 0.32 16 40 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.95 6.56 -51.93 -0.34 0.61 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.76 6.75 -51.93 -0.35 0.41 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.07 0.81 7.05 -51.93 -0.37 0.44 16 49 H 0.06 0.78 6.82 -51.93 -0.35 0.42 16 LS Contribution 399.85 15.07 6.03 6.03 Total: -1.00 -34.68 399.85 -7.73 -42.41 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -7.86 Total: -1.49 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 0.06 Total: 12.28 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: -0.10 Total: -43.72 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -0.83 Total: -31.78 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.68 -7.73 -42.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873433465.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.290 kcal (2) G-P(sol) polarization free energy of solvation -34.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds