Wall clock time and date at job start Tue Mar 31 2020 23:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.62473 * 2 1 4 4 C 1.53245 * 109.62849 * 239.61554 * 2 1 3 5 5 N 1.46897 * 109.33558 * 294.12186 * 4 2 1 6 6 C 1.46908 * 110.99836 * 172.74717 * 5 4 2 7 7 C 1.53002 * 109.46937 * 76.39924 * 6 5 4 8 8 H 1.09000 * 109.46771 * 55.70705 * 7 6 5 9 9 O 1.42898 * 109.47345 * 295.70542 * 7 6 5 10 10 C 1.50699 * 109.46973 * 175.70366 * 7 6 5 11 11 C 1.38260 * 119.96470 * 265.00158 * 10 7 6 12 12 C 1.38215 * 120.06727 * 180.02562 * 11 10 7 13 13 C 1.38409 * 120.00184 * 359.97391 * 12 11 10 14 14 F 1.35097 * 120.03215 * 179.97438 * 13 12 11 15 15 C 1.38646 * 119.93036 * 0.02562 * 13 12 11 16 16 F 1.35106 * 120.03620 * 180.02562 * 15 13 12 17 17 C 1.38217 * 119.96360 * 84.72786 * 10 7 6 18 18 C 1.46900 * 111.27141 * 296.89175 * 5 4 2 19 19 C 1.53239 * 109.33685 * 63.10937 * 18 5 4 20 20 H 1.08998 * 109.62711 * 65.87919 * 19 18 5 21 21 C 1.52998 * 109.62965 * 186.45966 * 19 18 5 22 22 N 1.47081 * 109.62673 * 120.58413 * 2 1 3 23 23 C 1.36931 * 120.88436 * 248.54675 * 22 2 1 24 24 H 1.07995 * 120.00348 * 208.50626 * 23 22 2 25 25 C 1.38815 * 119.99979 * 28.50487 * 23 22 2 26 26 N 1.31624 * 119.99731 * 11.65114 * 25 23 22 27 27 Si 1.86798 * 120.00203 * 191.65548 * 25 23 22 28 28 H 1.48501 * 109.47017 * 359.97438 * 27 25 23 29 29 H 1.48494 * 109.47215 * 119.99998 * 27 25 23 30 30 H 1.48503 * 109.46800 * 240.00176 * 27 25 23 31 31 H 1.08995 * 109.47339 * 180.38306 * 1 2 3 32 32 H 1.09008 * 109.47104 * 60.38274 * 1 2 3 33 33 H 1.09002 * 109.47343 * 300.38915 * 1 2 3 34 34 H 1.09000 * 109.49090 * 54.07962 * 4 2 1 35 35 H 1.08999 * 109.49015 * 174.13945 * 4 2 1 36 36 H 1.08994 * 109.46911 * 196.40147 * 6 5 4 37 37 H 1.08997 * 109.46964 * 316.40398 * 6 5 4 38 38 H 0.96700 * 114.00218 * 299.99990 * 9 7 6 39 39 H 1.07997 * 119.96605 * 359.97438 * 11 10 7 40 40 H 1.08003 * 119.99426 * 179.97438 * 12 11 10 41 41 H 1.08004 * 119.99908 * 0.02562 * 17 10 7 42 42 H 1.09000 * 109.49475 * 183.06625 * 18 5 4 43 43 H 1.09000 * 109.49394 * 303.15300 * 18 5 4 44 44 H 1.09004 * 109.47138 * 57.74310 * 21 19 18 45 45 H 1.08994 * 109.47359 * 177.74694 * 21 19 18 46 46 H 1.09001 * 109.46977 * 297.74863 * 21 19 18 47 47 H 0.96997 * 119.99843 * 184.95077 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7301 -1.2451 5 7 1.6746 -2.1494 -1.1646 6 6 1.9978 -2.8494 -2.4151 7 6 3.5044 -3.1075 -2.4804 8 1 3.8177 -3.6570 -1.5926 9 8 4.1993 -1.8602 -2.5384 10 6 3.8225 -3.9174 -3.7107 11 6 3.9242 -5.2936 -3.6244 12 6 4.2163 -6.0385 -4.7514 13 6 4.4069 -5.4069 -5.9681 14 9 4.6929 -6.1344 -7.0700 15 6 4.3048 -4.0269 -6.0548 16 9 4.4899 -3.4083 -7.2415 17 6 4.0066 -3.2843 -4.9255 18 6 2.3147 -2.8027 -0.0151 19 6 1.8109 -2.1575 1.2804 20 1 0.7480 -2.3649 1.4035 21 6 2.5896 -2.7201 2.4713 22 7 2.0240 -0.7049 1.1926 23 6 2.6649 -0.0267 2.1948 24 1 3.4006 -0.5312 2.8036 25 6 2.3691 1.3093 2.4282 26 7 1.3231 1.8622 1.8515 27 14 3.4557 2.3226 3.5605 28 1 4.5580 1.4734 4.0792 29 1 4.0254 3.4676 2.8059 30 1 2.6471 2.8320 4.6971 31 1 -0.3634 -1.0276 0.0069 32 1 -0.3634 0.5079 -0.8935 33 1 -0.3634 0.5199 0.8865 34 1 1.5992 -0.2879 -2.1362 35 1 3.1297 -0.6391 -1.2975 36 1 1.4646 -3.7995 -2.4477 37 1 1.6973 -2.2348 -3.2636 38 1 3.9694 -1.3171 -3.3048 39 1 3.7761 -5.7869 -2.6751 40 1 4.2959 -7.1133 -4.6824 41 1 3.9229 -2.2095 -4.9924 42 1 2.0648 -3.8636 -0.0141 43 1 3.3959 -2.6832 -0.0844 44 1 3.6546 -2.5377 2.3279 45 1 2.2572 -2.2307 3.3867 46 1 2.4117 -3.7928 2.5476 47 1 1.1569 2.8120 1.9567 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878775362.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:30 Heat of formation + Delta-G solvation = -74.249458 kcal Electronic energy + Delta-G solvation = -30822.589696 eV Core-core repulsion = 26449.487129 eV Total energy + Delta-G solvation = -4373.102567 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.76963 -48.84636 -40.20227 -38.61500 -36.78434 -34.35928 -32.51082 -31.90486 -31.26314 -30.93059 -28.24209 -27.25566 -26.15593 -24.74035 -23.82184 -23.41712 -22.27786 -21.06440 -20.67390 -18.58076 -18.47484 -17.64235 -17.45732 -16.66705 -16.57154 -16.11552 -15.31114 -15.26878 -15.25007 -15.13671 -14.81786 -14.48200 -14.27644 -14.07065 -13.77584 -13.55520 -13.21613 -13.12470 -12.90009 -12.61864 -12.35409 -11.88469 -11.77063 -11.65283 -11.48136 -11.36292 -11.13621 -10.89869 -10.83310 -10.65401 -10.55999 -10.45468 -10.40925 -9.94986 -9.79817 -9.46469 -9.41463 -9.16653 -9.01499 -8.40579 -7.59492 -6.54547 -5.67282 -3.15673 0.51547 0.60468 2.94214 3.40096 3.40841 3.48546 3.49479 3.95366 4.09460 4.17963 4.25108 4.46716 4.55298 4.59841 4.70609 4.96432 5.07689 5.32135 5.34612 5.38710 5.44764 5.46524 5.54666 5.63406 5.79353 5.87841 5.92940 6.02707 6.12349 6.19898 6.32862 6.34393 6.37202 6.45381 6.56130 6.68098 6.90955 6.99902 7.07894 7.15648 7.30193 7.42817 7.56686 7.61889 7.79701 7.91898 8.02943 8.53138 9.31543 9.92610 10.50806 11.36912 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.020916 B = 0.002674 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.355267 B =10467.984060 C =10747.203507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.197 3.803 3 H 0.096 0.904 4 C 0.028 3.972 5 N -0.518 5.518 6 C 0.029 3.971 7 C 0.108 3.892 8 H 0.118 0.882 9 O -0.540 6.540 10 C -0.086 4.086 11 C -0.092 4.092 12 C -0.121 4.121 13 C 0.060 3.940 14 F -0.131 7.131 15 C 0.073 3.927 16 F -0.129 7.129 17 C -0.121 4.121 18 C 0.043 3.957 19 C 0.172 3.828 20 H 0.031 0.969 21 C -0.138 4.138 22 N -0.584 5.584 23 C -0.241 4.241 24 H 0.069 0.931 25 C 0.000 4.000 26 N -0.900 5.900 27 Si 0.898 3.102 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.292 1.292 31 H 0.030 0.970 32 H 0.018 0.982 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.371 0.629 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.056 0.944 43 H 0.038 0.962 44 H 0.051 0.949 45 H 0.063 0.937 46 H 0.038 0.962 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.669 -14.186 -13.385 19.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.091 3.909 3 H 0.114 0.886 4 C -0.101 4.101 5 N -0.240 5.240 6 C -0.101 4.101 7 C 0.047 3.953 8 H 0.136 0.864 9 O -0.345 6.345 10 C -0.088 4.088 11 C -0.110 4.110 12 C -0.140 4.140 13 C 0.040 3.960 14 F -0.109 7.109 15 C 0.053 3.947 16 F -0.107 7.107 17 C -0.139 4.139 18 C -0.087 4.087 19 C 0.065 3.935 20 H 0.049 0.951 21 C -0.196 4.196 22 N -0.307 5.307 23 C -0.371 4.371 24 H 0.087 0.913 25 C -0.198 4.198 26 N -0.546 5.546 27 Si 0.728 3.272 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.219 1.219 31 H 0.050 0.950 32 H 0.037 0.963 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.219 0.781 39 H 0.161 0.839 40 H 0.165 0.835 41 H 0.162 0.838 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.057 0.943 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.347 -14.260 -12.742 19.414 hybrid contribution 1.205 0.739 -0.740 1.595 sum 4.551 -13.521 -13.482 19.629 Atomic orbital electron populations 1.21968 0.98330 0.98878 1.00199 1.20423 0.92293 0.96029 0.82201 0.88598 1.23115 0.99751 0.86895 1.00296 1.62251 1.57606 1.03429 1.00757 1.22976 0.91751 1.00416 0.94948 1.21893 0.94509 0.84542 0.94318 0.86432 1.86759 1.67943 1.29794 1.50008 1.20709 0.97618 0.94790 0.95664 1.20973 0.98416 0.92884 0.98765 1.21094 1.00982 1.01491 0.90400 1.17700 1.05942 0.87779 0.84595 1.91527 1.91138 1.76963 1.51289 1.17617 1.05399 0.89184 0.82541 1.91542 1.92831 1.82589 1.43754 1.20810 1.01484 1.01082 0.90566 1.22741 0.96769 0.96714 0.92458 1.20445 0.96298 0.86016 0.90755 0.95122 1.21811 1.00383 0.97940 0.99490 1.44224 1.66876 1.00976 1.18613 1.19245 1.14215 0.93873 1.09766 0.91322 1.25037 0.96562 0.98956 0.99246 1.70013 1.26048 1.10820 1.47717 0.86291 0.79979 0.80407 0.80479 1.20505 1.21832 1.21931 0.95048 0.96310 0.91031 0.93017 0.92740 0.90214 0.90856 0.78124 0.83940 0.83517 0.83817 0.92578 0.94368 0.93036 0.91764 0.94346 0.93990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.95 37.16 0.33 -2.68 16 2 C 0.20 4.47 2.34 -67.49 -0.16 4.31 16 3 H 0.10 2.51 6.09 -51.93 -0.32 2.19 16 4 C 0.03 0.51 4.48 -3.70 -0.02 0.49 16 5 N -0.52 -8.29 4.33 -234.31 -1.02 -9.31 16 6 C 0.03 0.34 5.26 -3.82 -0.02 0.32 16 7 C 0.11 1.17 2.63 -27.88 -0.07 1.10 16 8 H 0.12 1.36 6.11 -51.93 -0.32 1.04 16 9 O -0.54 -6.81 10.31 -35.23 -0.36 -7.17 16 10 C -0.09 -0.79 5.00 -104.62 -0.52 -1.32 16 11 C -0.09 -0.73 9.68 -39.58 -0.38 -1.11 16 12 C -0.12 -0.95 10.02 -39.53 -0.40 -1.35 16 13 C 0.06 0.60 7.31 -39.37 -0.29 0.31 16 14 F -0.13 -1.43 17.18 2.25 0.04 -1.39 16 15 C 0.07 0.76 7.31 -39.37 -0.29 0.47 16 16 F -0.13 -1.48 17.18 2.25 0.04 -1.44 16 17 C -0.12 -1.12 9.30 -39.52 -0.37 -1.49 16 18 C 0.04 0.70 3.85 -3.70 -0.01 0.69 16 19 C 0.17 3.45 3.25 -67.49 -0.22 3.23 16 20 H 0.03 0.67 7.60 -51.93 -0.39 0.27 16 21 C -0.14 -2.51 7.95 37.16 0.30 -2.21 16 22 N -0.58 -13.85 2.73 -157.00 -0.43 -14.27 16 23 C -0.24 -6.31 8.67 -15.06 -0.13 -6.44 16 24 H 0.07 1.78 6.22 -52.49 -0.33 1.45 16 25 C 0.00 -0.01 5.06 -17.43 -0.09 -0.09 16 26 N -0.90 -24.98 9.55 55.49 0.53 -24.45 16 27 Si 0.90 21.40 29.57 -169.99 -5.03 16.37 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 31 H 0.03 0.68 7.06 -51.93 -0.37 0.31 16 32 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.07 1.83 6.86 -51.93 -0.36 1.47 16 34 H 0.05 0.87 7.92 -51.93 -0.41 0.46 16 35 H 0.05 1.04 5.81 -51.93 -0.30 0.74 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.82 7.84 -51.93 -0.41 0.41 16 38 H 0.37 3.55 7.39 45.56 0.34 3.89 16 39 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.14 1.11 6.62 -52.48 -0.35 0.76 16 42 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 43 H 0.04 0.67 6.60 -51.93 -0.34 0.33 16 44 H 0.05 0.95 7.66 -51.93 -0.40 0.55 16 45 H 0.06 1.27 7.46 -51.93 -0.39 0.88 16 46 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.25 6.80 8.32 -40.82 -0.34 6.46 16 LS Contribution 367.47 15.07 5.54 5.54 Total: -1.00 -29.41 367.47 -9.03 -38.44 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.01 Total: 3.45 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.34 Total: -5.76 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.91 Total: -48.03 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.36 Total: -7.17 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.08 Total: -2.84 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.41 -9.03 -38.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878775362.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.808 kcal (2) G-P(sol) polarization free energy of solvation -29.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds