Wall clock time and date at job start Tue Mar 31 2020 23:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.78600 * 2 1 4 4 C 1.53234 * 109.63224 * 239.51575 * 2 1 3 5 5 N 1.46901 * 109.34378 * 186.46112 * 4 2 1 6 6 C 1.46898 * 111.00303 * 187.25354 * 5 4 2 7 7 C 1.53004 * 109.46877 * 310.81624 * 6 5 4 8 8 H 1.08994 * 109.47613 * 54.24164 * 7 6 5 9 9 O 1.42898 * 109.47029 * 294.23748 * 7 6 5 10 10 C 1.50706 * 109.47058 * 174.24081 * 7 6 5 11 11 C 1.38259 * 119.96240 * 84.72248 * 10 7 6 12 12 C 1.38217 * 120.06453 * 179.72472 * 11 10 7 13 13 C 1.38405 * 120.00520 * 0.55090 * 12 11 10 14 14 F 1.35089 * 120.03742 * 179.74547 * 13 12 11 15 15 C 1.38653 * 119.92269 * 359.72639 * 13 12 11 16 16 F 1.35102 * 120.03227 * 180.02562 * 15 13 12 17 17 C 1.38207 * 119.96444 * 264.99884 * 10 7 6 18 18 C 1.46897 * 111.26717 * 63.10005 * 5 4 2 19 19 C 1.53233 * 109.34562 * 296.89984 * 18 5 4 20 20 H 1.09008 * 109.62707 * 293.92581 * 19 18 5 21 21 C 1.52990 * 109.63349 * 173.54011 * 19 18 5 22 22 N 1.47079 * 109.62889 * 120.48336 * 2 1 3 23 23 C 1.36943 * 120.88038 * 350.87724 * 22 2 1 24 24 H 1.07992 * 119.99880 * 127.57028 * 23 22 2 25 25 C 1.38809 * 119.99667 * 307.57040 * 23 22 2 26 26 N 1.31622 * 120.00180 * 342.98277 * 25 23 22 27 27 Si 1.86806 * 119.99815 * 162.98786 * 25 23 22 28 28 H 1.48499 * 109.47102 * 59.99654 * 27 25 23 29 29 H 1.48500 * 109.46920 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.46870 * 299.99467 * 27 25 23 31 31 H 1.08997 * 109.47132 * 187.81812 * 1 2 3 32 32 H 1.09002 * 109.47308 * 307.82170 * 1 2 3 33 33 H 1.09007 * 109.46798 * 67.82066 * 1 2 3 34 34 H 1.09003 * 109.49662 * 66.49693 * 4 2 1 35 35 H 1.09007 * 109.51448 * 306.43704 * 4 2 1 36 36 H 1.09002 * 109.47468 * 70.81018 * 6 5 4 37 37 H 1.08995 * 109.47583 * 190.81593 * 6 5 4 38 38 H 0.96704 * 114.00125 * 300.00293 * 9 7 6 39 39 H 1.08001 * 119.96232 * 0.02562 * 11 10 7 40 40 H 1.08001 * 119.99374 * 180.28154 * 12 11 10 41 41 H 1.08004 * 119.99810 * 0.02562 * 17 10 7 42 42 H 1.09006 * 109.49109 * 176.93664 * 18 5 4 43 43 H 1.09005 * 109.48794 * 56.86075 * 18 5 4 44 44 H 1.09004 * 109.47181 * 59.99632 * 21 19 18 45 45 H 1.09000 * 109.47420 * 299.99927 * 21 19 18 46 46 H 1.09006 * 109.47705 * 179.97438 * 21 19 18 47 47 H 0.97003 * 119.99820 * 185.05805 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0448 -0.7322 -1.2438 5 7 3.5055 -0.8643 -1.1608 6 6 4.0569 -1.4061 -2.4099 7 6 3.2661 -2.6503 -2.8191 8 1 2.2051 -2.4061 -2.8701 9 8 3.4712 -3.6838 -1.8538 10 6 3.7380 -3.1237 -4.1699 11 6 4.8426 -3.9498 -4.2649 12 6 5.2737 -4.3898 -5.5022 13 6 4.6065 -3.9944 -6.6485 14 9 5.0305 -4.4200 -7.8585 15 6 3.5022 -3.1614 -6.5535 16 9 2.8490 -2.7744 -7.6710 17 6 3.0695 -2.7270 -5.3126 18 6 3.9016 -1.6870 -0.0100 19 6 3.4629 -0.9940 1.2843 20 1 4.0201 -0.0655 1.4096 21 6 3.7266 -1.9163 2.4761 22 7 2.0240 -0.7028 1.1938 23 6 1.1671 -1.0757 2.1948 24 1 1.1552 -2.0982 2.5423 25 6 0.3140 -0.1396 2.7627 26 7 0.5431 1.1459 2.5966 27 14 -1.1592 -0.7041 3.7630 28 1 -0.6928 -1.5121 4.9184 29 1 -1.9061 0.4809 4.2562 30 1 -2.0502 -1.5299 2.9090 31 1 -0.3633 -1.0181 0.1398 32 1 -0.3634 0.6302 0.8118 33 1 -0.3633 0.3880 -0.9517 34 1 1.7811 -0.1638 -2.1357 35 1 1.5924 -1.7225 -1.2967 36 1 3.9834 -0.6543 -3.1958 37 1 5.1028 -1.6735 -2.2596 38 1 4.3950 -3.9524 -1.7554 39 1 5.3660 -4.2554 -3.3710 40 1 6.1340 -5.0388 -5.5747 41 1 2.2097 -2.0778 -5.2373 42 1 4.9845 -1.8111 -0.0072 43 1 3.4233 -2.6640 -0.0797 44 1 4.7912 -2.1444 2.5305 45 1 3.1630 -2.8410 2.3517 46 1 3.4141 -1.4208 3.3953 47 1 -0.0090 1.7999 3.0531 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878775363.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:33 Heat of formation + Delta-G solvation = -74.789250 kcal Electronic energy + Delta-G solvation = -30757.157442 eV Core-core repulsion = 26384.031468 eV Total energy + Delta-G solvation = -4373.125974 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.76689 -48.84311 -40.21013 -38.56687 -36.76597 -34.48853 -32.80630 -31.94173 -31.25346 -30.88585 -28.26289 -27.23520 -25.81945 -25.12522 -23.77575 -23.67147 -22.02323 -20.94793 -20.19531 -19.03198 -18.52731 -17.56669 -17.50982 -16.66344 -16.57422 -16.18113 -15.49001 -15.25672 -15.12284 -14.89305 -14.81641 -14.51294 -14.42434 -14.27153 -14.05571 -13.55221 -13.33560 -12.96822 -12.81814 -12.58135 -12.26484 -12.06045 -11.83134 -11.65513 -11.54280 -11.28532 -11.22190 -11.07407 -10.81215 -10.60761 -10.55622 -10.46138 -10.32258 -10.10336 -9.77248 -9.62645 -9.46828 -9.35929 -9.02601 -8.09698 -7.64803 -6.23249 -5.72392 -3.45565 0.51025 0.60627 2.93825 3.34779 3.40858 3.41179 3.43554 3.93777 4.07229 4.16557 4.26612 4.43317 4.49749 4.60302 4.72653 4.88828 5.08720 5.30116 5.32450 5.35530 5.40370 5.42601 5.54325 5.63105 5.79753 5.90993 5.97134 6.00081 6.13687 6.28347 6.34075 6.34982 6.43418 6.49273 6.56868 6.66130 6.78348 6.90142 6.99939 7.19925 7.26745 7.39969 7.58137 7.59868 7.71630 7.80430 7.96332 8.67221 9.27347 9.80853 10.59397 11.24087 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.021632 B = 0.002675 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.071977 B =10463.829564 C =11055.451733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.203 3.797 3 H 0.034 0.966 4 C 0.036 3.964 5 N -0.523 5.523 6 C 0.030 3.970 7 C 0.107 3.893 8 H 0.118 0.882 9 O -0.539 6.539 10 C -0.086 4.086 11 C -0.095 4.095 12 C -0.120 4.120 13 C 0.060 3.940 14 F -0.130 7.130 15 C 0.072 3.928 16 F -0.128 7.128 17 C -0.118 4.118 18 C 0.036 3.964 19 C 0.172 3.828 20 H 0.027 0.973 21 C -0.129 4.129 22 N -0.578 5.578 23 C -0.258 4.258 24 H 0.051 0.949 25 C 0.034 3.966 26 N -0.880 5.880 27 Si 0.885 3.115 28 H -0.280 1.280 29 H -0.290 1.290 30 H -0.279 1.279 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.019 0.981 34 H 0.055 0.945 35 H 0.036 0.964 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.369 0.631 39 H 0.139 0.861 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.051 0.949 43 H 0.059 0.941 44 H 0.033 0.967 45 H 0.049 0.951 46 H 0.063 0.937 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.530 -8.829 -14.842 19.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.096 3.904 3 H 0.051 0.949 4 C -0.093 4.093 5 N -0.245 5.245 6 C -0.099 4.099 7 C 0.046 3.954 8 H 0.136 0.864 9 O -0.344 6.344 10 C -0.088 4.088 11 C -0.113 4.113 12 C -0.139 4.139 13 C 0.040 3.960 14 F -0.109 7.109 15 C 0.052 3.948 16 F -0.107 7.107 17 C -0.137 4.137 18 C -0.093 4.093 19 C 0.066 3.934 20 H 0.044 0.956 21 C -0.187 4.187 22 N -0.302 5.302 23 C -0.388 4.388 24 H 0.068 0.932 25 C -0.167 4.167 26 N -0.521 5.521 27 Si 0.714 3.286 28 H -0.206 1.206 29 H -0.216 1.216 30 H -0.205 1.205 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.217 0.783 39 H 0.157 0.843 40 H 0.165 0.835 41 H 0.166 0.834 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.052 0.948 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.940 -8.118 -14.746 19.060 hybrid contribution -0.546 -1.003 -0.327 1.188 sum 8.394 -9.121 -15.074 19.516 Atomic orbital electron populations 1.22041 0.95833 1.02258 1.00238 1.20239 0.92738 0.93688 0.83725 0.94852 1.22961 0.86290 0.99617 1.00476 1.62208 1.12088 1.48958 1.01249 1.22960 0.98438 0.94101 0.94436 1.21890 1.02371 0.88400 0.82695 0.86415 1.86766 1.31683 1.56177 1.59808 1.20676 0.95005 0.96624 0.96446 1.20828 0.96034 0.97098 0.97358 1.21045 1.00916 1.01346 0.90561 1.17696 0.96232 1.00293 0.81779 1.91525 1.89199 1.88300 1.41880 1.17661 0.93462 0.99925 0.83743 1.91541 1.79791 1.89422 1.49924 1.20957 1.01675 1.01468 0.89574 1.22930 0.98113 0.96504 0.91741 1.20525 0.87291 0.94857 0.90770 0.95579 1.21685 0.97844 0.99695 0.99478 1.43991 1.00598 1.68171 1.17476 1.18631 1.14489 0.92389 1.13319 0.93190 1.25565 0.99700 0.95254 0.96227 1.70014 1.39104 0.99837 1.43127 0.86682 0.83599 0.77867 0.80485 1.20563 1.21569 1.20527 0.93595 0.88864 0.96228 0.92669 0.94588 0.90146 0.90798 0.78294 0.84338 0.83548 0.83398 0.93016 0.92308 0.94795 0.93203 0.91806 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 7.94 37.16 0.30 -2.99 16 2 C 0.20 4.57 3.11 -67.50 -0.21 4.36 16 3 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 4 C 0.04 0.65 3.91 -3.70 -0.01 0.63 16 5 N -0.52 -8.56 4.83 -234.32 -1.13 -9.69 16 6 C 0.03 0.36 5.24 -3.82 -0.02 0.34 16 7 C 0.11 1.18 2.71 -27.88 -0.08 1.11 16 8 H 0.12 1.49 6.02 -51.93 -0.31 1.18 16 9 O -0.54 -6.37 10.32 -35.23 -0.36 -6.73 16 10 C -0.09 -0.80 5.00 -104.62 -0.52 -1.32 16 11 C -0.09 -0.72 9.32 -39.58 -0.37 -1.09 16 12 C -0.12 -0.93 10.02 -39.53 -0.40 -1.33 16 13 C 0.06 0.60 7.31 -39.37 -0.29 0.31 16 14 F -0.13 -1.43 17.18 2.25 0.04 -1.39 16 15 C 0.07 0.76 7.31 -39.37 -0.29 0.48 16 16 F -0.13 -1.50 17.18 2.25 0.04 -1.46 16 17 C -0.12 -1.14 9.66 -39.53 -0.38 -1.52 16 18 C 0.04 0.61 4.34 -3.71 -0.02 0.60 16 19 C 0.17 3.61 3.66 -67.50 -0.25 3.36 16 20 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 21 C -0.13 -2.48 8.18 37.15 0.30 -2.18 16 22 N -0.58 -13.89 2.82 -157.02 -0.44 -14.34 16 23 C -0.26 -6.73 6.80 -15.06 -0.10 -6.83 16 24 H 0.05 1.33 7.11 -52.49 -0.37 0.96 16 25 C 0.03 0.90 3.46 -17.43 -0.06 0.84 16 26 N -0.88 -24.53 11.49 55.49 0.64 -23.89 16 27 Si 0.89 20.80 29.59 -169.99 -5.03 15.77 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 31 H 0.04 1.06 7.67 -51.93 -0.40 0.66 16 32 H 0.09 2.37 4.85 -51.93 -0.25 2.11 16 33 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 34 H 0.05 0.90 8.11 -51.93 -0.42 0.48 16 35 H 0.04 0.68 6.55 -51.93 -0.34 0.34 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.77 7.87 -51.93 -0.41 0.36 16 38 H 0.37 2.97 7.39 45.56 0.34 3.31 16 39 H 0.14 0.72 6.62 -52.49 -0.35 0.37 16 40 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 42 H 0.05 0.76 7.94 -51.93 -0.41 0.35 16 43 H 0.06 1.04 5.84 -51.93 -0.30 0.74 16 44 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.97 7.56 -51.93 -0.39 0.57 16 46 H 0.06 1.36 7.69 -51.93 -0.40 0.96 16 47 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 LS Contribution 369.06 15.07 5.56 5.56 Total: -1.00 -29.58 369.06 -9.20 -38.79 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.12 Total: 2.62 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -2.39 Total: -5.23 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.94 Total: -47.92 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.36 Total: -6.73 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.08 Total: -2.85 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.58 -9.20 -38.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878775363.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.002 kcal (2) G-P(sol) polarization free energy of solvation -29.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds