Wall clock time and date at job start Tue Mar 31 2020 23:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.62965 * 2 1 4 4 C 1.53242 * 109.62838 * 239.61530 * 2 1 3 5 5 N 1.46893 * 109.33745 * 294.11462 * 4 2 1 6 6 C 1.46902 * 111.00067 * 172.74477 * 5 4 2 7 7 C 1.52996 * 109.47245 * 283.78706 * 6 5 4 8 8 H 1.08996 * 109.47285 * 56.92502 * 7 6 5 9 9 O 1.42896 * 109.47079 * 296.92076 * 7 6 5 10 10 C 1.50703 * 109.47351 * 176.92197 * 7 6 5 11 11 C 1.38234 * 119.98903 * 94.99706 * 10 7 6 12 12 C 1.38181 * 120.05191 * 180.02562 * 11 10 7 13 13 C 1.38495 * 120.02196 * 359.97438 * 12 11 10 14 14 F 1.35102 * 120.00834 * 179.97438 * 13 12 11 15 15 C 1.38395 * 119.97948 * 0.02562 * 13 12 11 16 16 C 1.38440 * 119.94828 * 359.77185 * 15 13 12 17 17 F 1.35093 * 120.01390 * 180.23068 * 16 15 13 18 18 C 1.46891 * 111.27460 * 296.89917 * 5 4 2 19 19 C 1.53235 * 109.34273 * 63.10077 * 18 5 4 20 20 H 1.09007 * 109.62661 * 66.07642 * 19 18 5 21 21 C 1.52996 * 109.63339 * 186.45983 * 19 18 5 22 22 N 1.47077 * 108.52274 * 306.17569 * 19 18 5 23 23 C 1.36933 * 120.88182 * 231.16086 * 22 19 18 24 24 H 1.08007 * 119.99997 * 26.19613 * 23 22 19 25 25 C 1.38815 * 120.00317 * 206.20259 * 23 22 19 26 26 N 1.31620 * 119.99949 * 15.28544 * 25 23 22 27 27 Si 1.86800 * 120.00239 * 195.29188 * 25 23 22 28 28 H 1.48498 * 109.47417 * 89.99455 * 27 25 23 29 29 H 1.48494 * 109.47067 * 209.99852 * 27 25 23 30 30 H 1.48501 * 109.46765 * 329.99493 * 27 25 23 31 31 H 1.08997 * 109.47085 * 180.38707 * 1 2 3 32 32 H 1.09000 * 109.47446 * 60.38540 * 1 2 3 33 33 H 1.09000 * 109.47023 * 300.38534 * 1 2 3 34 34 H 1.08993 * 109.49398 * 54.08085 * 4 2 1 35 35 H 1.09004 * 109.49073 * 174.12999 * 4 2 1 36 36 H 1.09009 * 109.46495 * 43.78444 * 6 5 4 37 37 H 1.09001 * 109.47521 * 163.78078 * 6 5 4 38 38 H 0.96696 * 114.00357 * 299.99653 * 9 7 6 39 39 H 1.07995 * 119.96942 * 359.97438 * 11 10 7 40 40 H 1.07997 * 119.98722 * 179.97438 * 12 11 10 41 41 H 1.08001 * 120.02697 * 180.02562 * 15 13 12 42 42 H 1.08997 * 109.49516 * 183.06769 * 18 5 4 43 43 H 1.09004 * 109.49222 * 303.14217 * 18 5 4 44 44 H 1.09000 * 109.46826 * 61.09160 * 21 19 18 45 45 H 1.08998 * 109.47591 * 181.09320 * 21 19 18 46 46 H 1.08997 * 109.47367 * 301.09676 * 21 19 18 47 47 H 0.96998 * 120.00280 * 184.97920 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0447 -0.7301 -1.2451 5 7 1.6747 -2.1493 -1.1646 6 6 1.9978 -2.8494 -2.4150 7 6 0.9584 -2.4960 -3.4806 8 1 0.9288 -1.4147 -3.6148 9 8 -0.3274 -2.9598 -3.0641 10 6 1.3317 -3.1538 -4.7841 11 6 0.7811 -4.3753 -5.1241 12 6 1.1228 -4.9799 -6.3188 13 6 2.0171 -4.3621 -7.1771 14 9 2.3513 -4.9537 -8.3448 15 6 2.5689 -3.1392 -6.8378 16 6 2.2226 -2.5324 -5.6426 17 9 2.7570 -1.3365 -5.3122 18 6 2.3147 -2.8025 -0.0150 19 6 1.8111 -2.1574 1.2805 20 1 0.7488 -2.3677 1.4053 21 6 2.5897 -2.7199 2.4713 22 7 2.0241 -0.7048 1.1926 23 6 2.6650 -0.0265 2.1947 24 1 3.3731 -0.5407 2.8277 25 6 2.4047 1.3219 2.3970 26 7 1.3462 1.8776 1.8464 27 14 3.5565 2.3478 3.4507 28 1 4.6182 2.9359 2.5951 29 1 2.7892 3.4369 4.1065 30 1 4.1777 1.4858 4.4882 31 1 -0.3633 -1.0276 0.0069 32 1 -0.3634 0.5078 -0.8934 33 1 -0.3633 0.5198 0.8865 34 1 1.5992 -0.2880 -2.1362 35 1 3.1297 -0.6390 -1.2976 36 1 2.9869 -2.5445 -2.7569 37 1 1.9891 -3.9256 -2.2417 38 1 -0.3749 -3.9155 -2.9252 39 1 0.0840 -4.8579 -4.4551 40 1 0.6923 -5.9344 -6.5832 41 1 3.2660 -2.6566 -7.5068 42 1 2.0650 -3.8635 -0.0140 43 1 3.3960 -2.6831 -0.0843 44 1 3.6480 -2.4854 2.3569 45 1 2.2163 -2.2738 3.3931 46 1 2.4596 -3.8013 2.5124 47 1 1.2028 2.8335 1.9273 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878775457.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:41 Heat of formation + Delta-G solvation = -76.234373 kcal Electronic energy + Delta-G solvation = -30820.846426 eV Core-core repulsion = 26447.657786 eV Total energy + Delta-G solvation = -4373.188639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.35749 -49.26584 -39.82043 -38.50742 -36.85860 -34.47274 -32.55282 -31.75328 -31.25468 -30.99161 -28.34423 -27.35074 -25.94047 -24.77966 -23.63901 -23.39006 -22.02783 -21.42597 -20.41572 -18.67727 -18.53312 -17.61081 -17.31672 -16.31226 -16.17436 -16.09341 -15.63335 -15.61595 -15.31917 -14.87795 -14.70863 -14.52333 -14.41398 -14.09667 -13.77767 -13.47935 -13.16028 -12.95500 -12.85032 -12.75524 -12.30105 -11.89682 -11.80226 -11.67804 -11.50928 -11.37601 -11.08263 -10.96249 -10.84763 -10.59559 -10.48541 -10.40092 -10.18307 -9.95961 -9.83747 -9.47621 -9.39613 -9.18377 -8.90857 -8.40446 -7.72702 -6.59890 -5.67554 -3.13250 0.54499 0.61961 2.94759 3.41052 3.48220 3.49186 3.49695 3.98298 4.05457 4.17047 4.31019 4.48074 4.54096 4.70767 4.81486 4.97240 5.18866 5.33342 5.37642 5.41634 5.45064 5.53948 5.56773 5.66631 5.68929 5.84290 5.91727 6.02783 6.13082 6.13631 6.27517 6.33889 6.36392 6.38221 6.46832 6.68054 6.93406 6.98794 7.10329 7.21584 7.30935 7.52074 7.59616 7.67285 7.78759 7.92507 8.03483 8.51146 9.30421 9.92503 10.49960 11.36945 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.021021 B = 0.002737 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.657159 B =10226.159588 C =10608.978956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.198 3.802 3 H 0.097 0.903 4 C 0.041 3.959 5 N -0.517 5.517 6 C 0.029 3.971 7 C 0.158 3.842 8 H 0.113 0.887 9 O -0.531 6.531 10 C -0.155 4.155 11 C -0.054 4.054 12 C -0.160 4.160 13 C 0.124 3.876 14 F -0.133 7.133 15 C -0.191 4.191 16 C 0.139 3.861 17 F -0.124 7.124 18 C 0.050 3.950 19 C 0.172 3.828 20 H 0.034 0.966 21 C -0.138 4.138 22 N -0.585 5.585 23 C -0.245 4.245 24 H 0.071 0.929 25 C -0.001 4.001 26 N -0.898 5.898 27 Si 0.897 3.103 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.281 1.281 31 H 0.035 0.965 32 H 0.019 0.981 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.022 0.978 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.367 0.633 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.149 0.851 42 H 0.058 0.942 43 H 0.026 0.974 44 H 0.051 0.949 45 H 0.062 0.938 46 H 0.038 0.962 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.034 -14.300 -16.127 21.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.091 3.909 3 H 0.115 0.885 4 C -0.088 4.088 5 N -0.241 5.241 6 C -0.100 4.100 7 C 0.097 3.903 8 H 0.131 0.869 9 O -0.335 6.335 10 C -0.157 4.157 11 C -0.072 4.072 12 C -0.179 4.179 13 C 0.105 3.895 14 F -0.111 7.111 15 C -0.210 4.210 16 C 0.120 3.880 17 F -0.102 7.102 18 C -0.079 4.079 19 C 0.066 3.934 20 H 0.052 0.948 21 C -0.196 4.196 22 N -0.308 5.308 23 C -0.374 4.374 24 H 0.088 0.912 25 C -0.199 4.199 26 N -0.543 5.543 27 Si 0.727 3.273 28 H -0.218 1.218 29 H -0.219 1.219 30 H -0.207 1.207 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.041 0.959 36 H 0.056 0.944 37 H 0.089 0.911 38 H 0.214 0.786 39 H 0.163 0.837 40 H 0.161 0.839 41 H 0.167 0.833 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.057 0.943 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.724 -13.497 -16.015 20.957 hybrid contribution 1.927 0.207 -0.006 1.938 sum 1.203 -13.290 -16.022 20.851 Atomic orbital electron populations 1.21909 0.97737 0.99288 1.00139 1.20424 0.92725 0.95877 0.81855 0.88538 1.22926 0.97261 0.87571 1.01077 1.61829 1.58719 1.02853 1.00690 1.22738 0.96339 0.99073 0.91890 1.20703 0.83993 0.98968 0.86597 0.86895 1.86739 1.29773 1.27301 1.89653 1.20925 0.98862 0.96970 0.98967 1.20657 0.97757 0.93035 0.95793 1.21179 0.99719 1.02064 0.94936 1.17302 0.97259 0.91943 0.83006 1.91534 1.91112 1.83207 1.45282 1.21038 1.05122 0.96536 0.98320 1.17093 0.95086 0.82339 0.93513 1.91570 1.84144 1.42188 1.92320 1.22683 0.95953 0.96847 0.92409 1.20442 0.96503 0.85880 0.90624 0.94823 1.21809 1.00550 0.97877 0.99351 1.44279 1.66902 1.01056 1.18613 1.19244 1.15834 0.92791 1.09557 0.91168 1.24972 0.96585 0.98721 0.99582 1.70044 1.25082 1.10414 1.48757 0.86370 0.80423 0.80330 0.80144 1.21771 1.21894 1.20673 0.94605 0.96173 0.91174 0.92308 0.95943 0.94381 0.91060 0.78621 0.83718 0.83861 0.83334 0.92350 0.95607 0.92954 0.91907 0.94295 0.93898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.97 37.16 0.33 -2.72 16 2 C 0.20 4.64 2.34 -67.49 -0.16 4.48 16 3 H 0.10 2.58 6.03 -51.92 -0.31 2.27 16 4 C 0.04 0.80 4.83 -3.70 -0.02 0.78 16 5 N -0.52 -8.88 3.97 -234.33 -0.93 -9.81 16 6 C 0.03 0.39 4.64 -3.82 -0.02 0.37 16 7 C 0.16 1.96 3.07 -27.88 -0.09 1.87 16 8 H 0.11 1.64 6.40 -51.93 -0.33 1.31 16 9 O -0.53 -6.64 12.91 -35.23 -0.45 -7.10 16 10 C -0.16 -1.60 5.07 -104.54 -0.53 -2.13 16 11 C -0.05 -0.43 9.30 -39.60 -0.37 -0.79 16 12 C -0.16 -1.20 10.02 -39.51 -0.40 -1.60 16 13 C 0.12 1.11 7.30 -39.43 -0.29 0.82 16 14 F -0.13 -1.24 17.27 2.25 0.04 -1.20 16 15 C -0.19 -1.79 10.01 -39.45 -0.39 -2.18 16 16 C 0.14 1.52 7.24 -39.43 -0.29 1.23 16 17 F -0.12 -1.55 16.56 2.25 0.04 -1.52 16 18 C 0.05 0.89 4.88 -3.71 -0.02 0.87 16 19 C 0.17 3.55 3.25 -67.50 -0.22 3.33 16 20 H 0.03 0.75 7.62 -51.93 -0.40 0.35 16 21 C -0.14 -2.55 7.93 37.16 0.29 -2.25 16 22 N -0.59 -14.21 2.74 -157.01 -0.43 -14.64 16 23 C -0.24 -6.48 8.76 -15.06 -0.13 -6.61 16 24 H 0.07 1.83 6.13 -52.48 -0.32 1.50 16 25 C 0.00 -0.02 4.99 -17.43 -0.09 -0.10 16 26 N -0.90 -25.26 9.67 55.49 0.54 -24.72 16 27 Si 0.90 21.56 29.58 -169.99 -5.03 16.53 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 30 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 31 H 0.03 0.81 7.07 -51.93 -0.37 0.44 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 1.83 6.94 -51.93 -0.36 1.47 16 34 H 0.06 1.09 6.67 -51.93 -0.35 0.75 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.04 0.54 7.99 -51.92 -0.42 0.13 16 37 H 0.07 0.83 7.76 -51.93 -0.40 0.42 16 38 H 0.37 3.08 7.32 45.56 0.33 3.41 16 39 H 0.15 0.77 6.40 -52.49 -0.34 0.43 16 40 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.06 0.88 7.89 -51.93 -0.41 0.47 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.99 7.48 -51.93 -0.39 0.60 16 45 H 0.06 1.25 7.63 -51.93 -0.40 0.85 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.25 6.92 8.32 -40.82 -0.34 6.58 16 LS Contribution 372.96 15.07 5.62 5.62 Total: -1.00 -29.67 372.96 -9.11 -38.77 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.12 Total: 2.69 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -2.37 Total: -4.64 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.82 Total: -49.17 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.45 Total: -7.10 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.08 Total: -2.72 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.67 -9.11 -38.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878775457.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.459 kcal (2) G-P(sol) polarization free energy of solvation -29.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds