Wall clock time and date at job start Tue Mar 31 2020 23:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.78916 * 2 1 4 4 C 1.52787 * 109.55635 * 239.76999 * 2 1 3 5 5 N 1.46897 * 109.42118 * 186.61087 * 4 2 1 6 6 C 1.46907 * 111.00054 * 187.11244 * 5 4 2 7 7 C 1.53000 * 109.47155 * 311.99486 * 6 5 4 8 8 H 1.09005 * 109.47184 * 55.39234 * 7 6 5 9 9 O 1.42895 * 109.46900 * 295.39554 * 7 6 5 10 10 C 1.50697 * 109.46875 * 175.39459 * 7 6 5 11 11 C 1.38224 * 119.98853 * 95.00407 * 10 7 6 12 12 C 1.38184 * 120.05534 * 179.97438 * 11 10 7 13 13 C 1.38502 * 120.02408 * 359.97438 * 12 11 10 14 14 F 1.35095 * 120.01656 * 179.97438 * 13 12 11 15 15 C 1.38401 * 119.96950 * 359.97438 * 13 12 11 16 16 C 1.38440 * 119.95404 * 359.77016 * 15 13 12 17 17 F 1.35097 * 120.01809 * 180.22509 * 16 15 13 18 18 C 1.46896 * 111.27037 * 62.96807 * 5 4 2 19 19 C 1.53239 * 109.33814 * 296.89428 * 18 5 4 20 20 H 1.09002 * 109.78932 * 294.02511 * 19 18 5 21 21 C 1.53001 * 109.62904 * 173.54000 * 19 18 5 22 22 N 1.47077 * 108.52369 * 53.82951 * 19 18 5 23 23 C 1.36929 * 120.88261 * 128.81658 * 22 19 18 24 24 H 1.08001 * 120.00356 * 232.95041 * 23 22 19 25 25 C 1.38813 * 120.00105 * 52.95566 * 23 22 19 26 26 N 1.31619 * 120.00220 * 200.39998 * 25 23 22 27 27 Si 1.86799 * 119.99922 * 20.39809 * 25 23 22 28 28 H 1.48498 * 109.47489 * 266.16507 * 27 25 23 29 29 H 1.48507 * 109.47215 * 26.16675 * 27 25 23 30 30 H 1.48501 * 109.47108 * 146.16231 * 27 25 23 31 31 H 1.08997 * 109.47464 * 303.64410 * 1 2 3 32 32 H 1.09005 * 109.46783 * 63.63896 * 1 2 3 33 33 H 1.09001 * 109.47381 * 183.63681 * 1 2 3 34 34 H 1.09001 * 109.56743 * 66.56197 * 4 2 1 35 35 H 1.08996 * 109.35879 * 306.53776 * 4 2 1 36 36 H 1.09004 * 109.46866 * 71.99314 * 6 5 4 37 37 H 1.09000 * 109.47315 * 191.99130 * 6 5 4 38 38 H 0.96707 * 113.99936 * 299.99739 * 9 7 6 39 39 H 1.08000 * 119.97422 * 359.96891 * 11 10 7 40 40 H 1.07999 * 119.99552 * 179.97438 * 12 11 10 41 41 H 1.08004 * 120.02062 * 179.97438 * 15 13 12 42 42 H 1.09007 * 109.49545 * 176.93558 * 18 5 4 43 43 H 1.09000 * 109.49481 * 56.85440 * 18 5 4 44 44 H 1.08994 * 109.47386 * 293.57343 * 21 19 18 45 45 H 1.09000 * 109.47162 * 53.57332 * 21 19 18 46 46 H 1.08999 * 109.47135 * 173.57123 * 21 19 18 47 47 H 0.96999 * 120.00181 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0414 -0.7249 -1.2439 5 7 3.5017 -0.8625 -1.1633 6 6 4.0495 -1.4024 -2.4149 7 6 3.2354 -2.6253 -2.8423 8 1 2.1825 -2.3529 -2.9169 9 8 3.3912 -3.6637 -1.8731 10 6 3.7247 -3.1112 -4.1823 11 6 4.6632 -4.1238 -4.2493 12 6 5.1125 -4.5707 -5.4773 13 6 4.6224 -4.0047 -6.6425 14 9 5.0622 -4.4414 -7.8429 15 6 3.6820 -2.9915 -6.5765 16 6 3.2287 -2.5481 -5.3459 17 9 2.3073 -1.5623 -5.2801 18 6 3.8964 -1.6902 -0.0157 19 6 3.4619 -0.9995 1.2814 20 1 4.0199 -0.0721 1.4104 21 6 3.7239 -1.9265 2.4700 22 7 2.0240 -0.7029 1.1938 23 6 1.1671 -1.0762 2.1945 24 1 0.2841 -1.6529 1.9622 25 6 1.4334 -0.7132 3.5076 26 7 0.8753 -1.3746 4.4993 27 14 2.5838 0.7139 3.8672 28 1 3.9606 0.1991 4.0778 29 1 2.5778 1.6560 2.7192 30 1 2.1274 1.4215 5.0905 31 1 -0.3634 0.5693 0.8555 32 1 -0.3633 0.4563 -0.9209 33 1 -0.3634 -1.0256 0.0652 34 1 1.7786 -0.1527 -2.1337 35 1 1.5854 -1.7133 -1.2992 36 1 3.9969 -0.6408 -3.1929 37 1 5.0886 -1.6934 -2.2611 38 1 4.3050 -3.9567 -1.7541 39 1 5.0457 -4.5660 -3.3413 40 1 5.8460 -5.3617 -5.5285 41 1 3.2996 -2.5492 -7.4846 42 1 4.9789 -1.8181 -0.0147 43 1 3.4145 -2.6652 -0.0876 44 1 3.0720 -2.7974 2.4022 45 1 4.7648 -2.2499 2.4560 46 1 3.5218 -1.3927 3.3986 47 1 1.0617 -1.1212 5.4169 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878775458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:43 Heat of formation + Delta-G solvation = -69.825340 kcal Electronic energy + Delta-G solvation = -31170.963576 eV Core-core repulsion = 26798.052853 eV Total energy + Delta-G solvation = -4372.910723 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.39673 -49.33497 -40.11540 -38.73005 -36.95749 -34.59309 -32.86266 -32.02151 -31.42488 -31.18896 -28.49449 -27.40712 -26.12234 -25.19727 -23.75188 -23.43037 -22.08629 -20.96437 -20.42854 -19.19674 -18.73677 -17.66768 -17.42623 -16.55614 -16.34812 -16.15195 -15.70168 -15.65274 -15.37362 -15.20957 -14.79842 -14.72915 -14.56355 -14.27385 -14.21506 -13.55140 -13.30796 -12.92874 -12.65669 -12.61040 -12.35603 -12.26813 -11.97326 -11.94182 -11.74102 -11.61078 -11.35208 -11.11337 -11.04112 -10.69316 -10.64223 -10.41352 -10.11144 -10.01877 -9.89824 -9.59755 -9.50985 -9.33403 -9.06792 -8.37009 -7.75882 -6.38426 -5.95901 -3.51584 0.49748 0.56886 2.90031 3.37679 3.44590 3.50858 3.62107 3.93763 4.06357 4.08997 4.20256 4.37078 4.42473 4.57745 4.71791 4.88098 4.98058 5.03308 5.28321 5.31815 5.36113 5.46656 5.48345 5.61170 5.68823 5.78355 5.82109 5.85058 6.00906 6.13235 6.17579 6.24962 6.31293 6.37769 6.40449 6.49810 6.51022 6.64860 6.76251 7.04923 7.10287 7.21586 7.35557 7.40218 7.51296 7.58409 8.17265 8.58772 9.10335 9.75691 10.33035 11.17367 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.024652 B = 0.002916 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.550846 B = 9601.120215 C =10101.296256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.170 3.830 3 H 0.031 0.969 4 C 0.042 3.958 5 N -0.526 5.526 6 C 0.032 3.968 7 C 0.111 3.889 8 H 0.119 0.881 9 O -0.537 6.537 10 C -0.152 4.152 11 C -0.056 4.056 12 C -0.158 4.158 13 C 0.124 3.876 14 F -0.132 7.132 15 C -0.189 4.189 16 C 0.138 3.862 17 F -0.125 7.125 18 C 0.036 3.964 19 C 0.170 3.830 20 H 0.026 0.974 21 C -0.143 4.143 22 N -0.597 5.597 23 C -0.265 4.265 24 H 0.070 0.930 25 C 0.054 3.946 26 N -0.898 5.898 27 Si 0.873 3.127 28 H -0.280 1.280 29 H -0.269 1.269 30 H -0.304 1.304 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.370 0.630 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.149 0.851 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.032 0.968 46 H 0.068 0.932 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.339 -4.853 -20.653 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.064 3.936 3 H 0.049 0.951 4 C -0.087 4.087 5 N -0.247 5.247 6 C -0.097 4.097 7 C 0.050 3.950 8 H 0.136 0.864 9 O -0.343 6.343 10 C -0.155 4.155 11 C -0.074 4.074 12 C -0.177 4.177 13 C 0.105 3.895 14 F -0.111 7.111 15 C -0.209 4.209 16 C 0.118 3.882 17 F -0.103 7.103 18 C -0.093 4.093 19 C 0.064 3.936 20 H 0.043 0.957 21 C -0.201 4.201 22 N -0.324 5.324 23 C -0.394 4.394 24 H 0.088 0.912 25 C -0.148 4.148 26 N -0.538 5.538 27 Si 0.702 3.298 28 H -0.207 1.207 29 H -0.193 1.193 30 H -0.232 1.232 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.218 0.782 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.167 0.833 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.051 0.949 46 H 0.086 0.914 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.818 -4.295 -20.357 22.597 hybrid contribution 0.891 0.077 -0.291 0.941 sum 9.710 -4.218 -20.648 23.204 Atomic orbital electron populations 1.21703 0.95219 1.02062 0.99897 1.20524 0.93092 0.93807 0.86197 0.95125 1.22666 0.86708 0.99845 0.99501 1.62202 1.11952 1.49066 1.01513 1.22920 0.98334 0.94418 0.94045 1.21741 1.02327 0.88264 0.82701 0.86362 1.86780 1.32458 1.55354 1.59671 1.20862 0.99591 0.98951 0.96057 1.20637 0.94458 0.94448 0.97892 1.21184 1.02960 1.02600 0.90968 1.17298 0.95990 0.95338 0.80919 1.91534 1.88004 1.88366 1.43186 1.21035 1.01082 1.00337 0.98427 1.17055 0.89795 0.88459 0.92868 1.91558 1.63059 1.58621 1.97073 1.22925 0.98435 0.96730 0.91236 1.20682 0.86072 0.94880 0.91994 0.95657 1.22040 0.98215 1.00922 0.98928 1.44445 1.02731 1.65769 1.19413 1.18426 1.06384 1.29477 0.85091 0.91220 1.25852 0.96223 0.96554 0.96129 1.69879 1.45489 1.39398 0.99002 0.87165 0.80694 0.84889 0.77042 1.20727 1.19343 1.23151 0.91769 0.94434 0.92528 0.92086 0.94023 0.90184 0.90667 0.78185 0.83882 0.83842 0.83310 0.92703 0.91701 0.91295 0.94939 0.91383 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.19 37.16 0.30 -2.22 16 2 C 0.17 3.49 3.64 -67.73 -0.25 3.24 16 3 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 4 C 0.04 0.72 3.83 -3.94 -0.02 0.71 16 5 N -0.53 -8.49 4.83 -234.61 -1.13 -9.62 16 6 C 0.03 0.39 5.26 -3.82 -0.02 0.37 16 7 C 0.11 1.28 2.42 -27.88 -0.07 1.21 16 8 H 0.12 1.61 5.82 -51.93 -0.30 1.31 16 9 O -0.54 -6.56 10.18 -35.23 -0.36 -6.92 16 10 C -0.15 -1.48 5.07 -104.55 -0.53 -2.01 16 11 C -0.06 -0.43 9.30 -39.61 -0.37 -0.80 16 12 C -0.16 -1.16 10.03 -39.50 -0.40 -1.55 16 13 C 0.12 1.06 7.30 -39.42 -0.29 0.77 16 14 F -0.13 -1.20 17.27 2.25 0.04 -1.16 16 15 C -0.19 -1.66 10.01 -39.45 -0.39 -2.06 16 16 C 0.14 1.39 7.24 -39.43 -0.29 1.10 16 17 F -0.12 -1.41 16.56 2.25 0.04 -1.37 16 18 C 0.04 0.62 4.38 -3.70 -0.02 0.60 16 19 C 0.17 3.64 2.45 -67.49 -0.17 3.48 16 20 H 0.03 0.58 7.34 -51.93 -0.38 0.20 16 21 C -0.14 -3.13 7.80 37.16 0.29 -2.84 16 22 N -0.60 -14.03 2.28 -157.27 -0.36 -14.39 16 23 C -0.27 -7.14 7.31 -15.06 -0.11 -7.25 16 24 H 0.07 2.07 7.20 -52.49 -0.38 1.69 16 25 C 0.05 1.51 4.00 -17.43 -0.07 1.44 16 26 N -0.90 -26.57 13.97 55.49 0.78 -25.80 16 27 Si 0.87 22.27 24.51 -169.99 -4.17 18.10 16 28 H -0.28 -6.90 6.34 56.52 0.36 -6.54 16 29 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 30 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 31 H 0.06 1.34 7.83 -51.93 -0.41 0.93 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 1.14 7.37 -51.93 -0.38 0.76 16 34 H 0.06 0.94 8.11 -51.93 -0.42 0.52 16 35 H 0.04 0.76 6.58 -51.93 -0.34 0.42 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.80 7.84 -51.93 -0.41 0.39 16 38 H 0.37 3.10 7.32 45.56 0.33 3.44 16 39 H 0.14 0.77 6.40 -52.49 -0.34 0.43 16 40 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.05 0.83 7.93 -51.93 -0.41 0.42 16 43 H 0.06 1.18 5.82 -51.93 -0.30 0.87 16 44 H 0.07 1.61 7.71 -51.93 -0.40 1.21 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 1.66 3.13 -51.93 -0.16 1.50 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -30.72 361.79 -8.11 -38.83 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.02 Total: 2.69 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.38 Total: -5.81 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.72 Total: -49.81 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.36 Total: -6.92 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.08 Total: -2.53 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.17 Total: 18.10 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.72 -8.11 -38.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878775458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.998 kcal (2) G-P(sol) polarization free energy of solvation -30.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds