Wall clock time and date at job start Tue Mar 31 2020 23:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.78916 * 2 1 4 4 C 1.52787 * 109.55635 * 239.76999 * 2 1 3 5 5 N 1.46897 * 109.42118 * 186.61087 * 4 2 1 6 6 C 1.46907 * 111.00054 * 187.11244 * 5 4 2 7 7 C 1.53000 * 109.47155 * 311.99486 * 6 5 4 8 8 H 1.09005 * 109.47184 * 55.39234 * 7 6 5 9 9 O 1.42895 * 109.46900 * 295.39554 * 7 6 5 10 10 C 1.50697 * 109.46875 * 175.39459 * 7 6 5 11 11 C 1.38224 * 119.98853 * 95.00407 * 10 7 6 12 12 C 1.38184 * 120.05534 * 179.97438 * 11 10 7 13 13 C 1.38502 * 120.02408 * 359.97438 * 12 11 10 14 14 F 1.35095 * 120.01656 * 179.97438 * 13 12 11 15 15 C 1.38401 * 119.96950 * 359.97438 * 13 12 11 16 16 C 1.38440 * 119.95404 * 359.77016 * 15 13 12 17 17 F 1.35097 * 120.01809 * 180.22509 * 16 15 13 18 18 C 1.46896 * 111.27037 * 62.96807 * 5 4 2 19 19 C 1.53239 * 109.33814 * 296.89428 * 18 5 4 20 20 H 1.09002 * 109.78932 * 294.02511 * 19 18 5 21 21 C 1.53001 * 109.62904 * 173.54000 * 19 18 5 22 22 N 1.47077 * 108.52369 * 53.82951 * 19 18 5 23 23 C 1.36929 * 120.88261 * 128.81658 * 22 19 18 24 24 H 1.08001 * 120.00356 * 232.95041 * 23 22 19 25 25 C 1.38813 * 120.00105 * 52.95566 * 23 22 19 26 26 N 1.31619 * 120.00220 * 200.39998 * 25 23 22 27 27 Si 1.86799 * 119.99922 * 20.39809 * 25 23 22 28 28 H 1.48498 * 109.47489 * 266.16507 * 27 25 23 29 29 H 1.48507 * 109.47215 * 26.16675 * 27 25 23 30 30 H 1.48501 * 109.47108 * 146.16231 * 27 25 23 31 31 H 1.08997 * 109.47464 * 303.64410 * 1 2 3 32 32 H 1.09005 * 109.46783 * 63.63896 * 1 2 3 33 33 H 1.09001 * 109.47381 * 183.63681 * 1 2 3 34 34 H 1.09001 * 109.56743 * 66.56197 * 4 2 1 35 35 H 1.08996 * 109.35879 * 306.53776 * 4 2 1 36 36 H 1.09004 * 109.46866 * 71.99314 * 6 5 4 37 37 H 1.09000 * 109.47315 * 191.99130 * 6 5 4 38 38 H 0.96707 * 113.99936 * 299.99739 * 9 7 6 39 39 H 1.08000 * 119.97422 * 359.96891 * 11 10 7 40 40 H 1.07999 * 119.99552 * 179.97438 * 12 11 10 41 41 H 1.08004 * 120.02062 * 179.97438 * 15 13 12 42 42 H 1.09007 * 109.49545 * 176.93558 * 18 5 4 43 43 H 1.09000 * 109.49481 * 56.85440 * 18 5 4 44 44 H 1.08994 * 109.47386 * 293.57343 * 21 19 18 45 45 H 1.09000 * 109.47162 * 53.57332 * 21 19 18 46 46 H 1.08999 * 109.47135 * 173.57123 * 21 19 18 47 47 H 0.96999 * 120.00181 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0414 -0.7249 -1.2439 5 7 3.5017 -0.8625 -1.1633 6 6 4.0495 -1.4024 -2.4149 7 6 3.2354 -2.6253 -2.8423 8 1 2.1825 -2.3529 -2.9169 9 8 3.3912 -3.6637 -1.8731 10 6 3.7247 -3.1112 -4.1823 11 6 4.6632 -4.1238 -4.2493 12 6 5.1125 -4.5707 -5.4773 13 6 4.6224 -4.0047 -6.6425 14 9 5.0622 -4.4414 -7.8429 15 6 3.6820 -2.9915 -6.5765 16 6 3.2287 -2.5481 -5.3459 17 9 2.3073 -1.5623 -5.2801 18 6 3.8964 -1.6902 -0.0157 19 6 3.4619 -0.9995 1.2814 20 1 4.0199 -0.0721 1.4104 21 6 3.7239 -1.9265 2.4700 22 7 2.0240 -0.7029 1.1938 23 6 1.1671 -1.0762 2.1945 24 1 0.2841 -1.6529 1.9622 25 6 1.4334 -0.7132 3.5076 26 7 0.8753 -1.3746 4.4993 27 14 2.5838 0.7139 3.8672 28 1 3.9606 0.1991 4.0778 29 1 2.5778 1.6560 2.7192 30 1 2.1274 1.4215 5.0905 31 1 -0.3634 0.5693 0.8555 32 1 -0.3633 0.4563 -0.9209 33 1 -0.3634 -1.0256 0.0652 34 1 1.7786 -0.1527 -2.1337 35 1 1.5854 -1.7133 -1.2992 36 1 3.9969 -0.6408 -3.1929 37 1 5.0886 -1.6934 -2.2611 38 1 4.3050 -3.9567 -1.7541 39 1 5.0457 -4.5660 -3.3413 40 1 5.8460 -5.3617 -5.5285 41 1 3.2996 -2.5492 -7.4846 42 1 4.9789 -1.8181 -0.0147 43 1 3.4145 -2.6652 -0.0876 44 1 3.0720 -2.7974 2.4022 45 1 4.7648 -2.2499 2.4560 46 1 3.5218 -1.3927 3.3986 47 1 1.0617 -1.1212 5.4169 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878775458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:43 Heat of formation + Delta-G solvation = -91.023682 kcal Electronic energy + Delta-G solvation = -31171.882805 eV Core-core repulsion = 26798.052853 eV Total energy + Delta-G solvation = -4373.829952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.10519 -50.04860 -41.06884 -39.86550 -38.09341 -36.00788 -34.49088 -33.70881 -32.47456 -31.87060 -29.98626 -28.77998 -27.57908 -26.69333 -25.04675 -24.15373 -23.04119 -22.30898 -21.97342 -20.89663 -19.42774 -18.42351 -18.35846 -18.23901 -17.19493 -17.03325 -16.86552 -16.66800 -16.43217 -16.40714 -16.31817 -15.84146 -15.49616 -15.39749 -15.25408 -15.04772 -14.56003 -14.42411 -14.12287 -13.82219 -13.69935 -13.63018 -13.25113 -13.06655 -12.96629 -12.79699 -12.51823 -12.48486 -12.29532 -12.27012 -12.14506 -11.94484 -11.86687 -11.69013 -11.57939 -11.29360 -11.12406 -10.49268 -10.14325 -9.79054 -9.00102 -8.31303 -8.11769 -5.66181 -0.16798 -0.04691 1.32744 1.41690 1.54642 2.26475 2.46169 2.79296 2.95159 3.11088 3.27200 3.34223 3.39354 3.47504 3.57082 3.85048 3.96512 4.03703 4.14388 4.24429 4.29459 4.41759 4.55546 4.59075 4.60583 4.66004 4.75687 4.78718 4.79927 4.84479 4.85675 4.90846 4.91510 4.93875 5.01709 5.05817 5.17388 5.18809 5.38425 5.46357 5.54421 5.67002 5.68499 6.03679 6.18780 6.26156 6.38534 6.71381 7.16113 7.68926 8.28494 9.04027 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.024652 B = 0.002916 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.550846 B = 9601.120215 C =10101.296256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.160 3.840 3 H 0.023 0.977 4 C 0.057 3.943 5 N -0.535 5.535 6 C 0.037 3.963 7 C 0.121 3.879 8 H 0.094 0.906 9 O -0.555 6.555 10 C -0.159 4.159 11 C -0.051 4.051 12 C -0.149 4.149 13 C 0.116 3.884 14 F -0.136 7.136 15 C -0.192 4.192 16 C 0.120 3.880 17 F -0.138 7.138 18 C 0.049 3.951 19 C 0.161 3.839 20 H 0.017 0.983 21 C -0.137 4.137 22 N -0.611 5.611 23 C -0.245 4.245 24 H 0.032 0.968 25 C 0.014 3.986 26 N -0.942 5.942 27 Si 0.926 3.074 28 H -0.264 1.264 29 H -0.274 1.274 30 H -0.311 1.311 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.029 0.971 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.387 0.613 39 H 0.170 0.830 40 H 0.170 0.830 41 H 0.158 0.842 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.070 0.930 46 H 0.039 0.961 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.133 -5.239 -22.823 26.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.055 3.945 3 H 0.041 0.959 4 C -0.072 4.072 5 N -0.257 5.257 6 C -0.092 4.092 7 C 0.061 3.939 8 H 0.111 0.889 9 O -0.364 6.364 10 C -0.161 4.161 11 C -0.068 4.068 12 C -0.168 4.168 13 C 0.097 3.903 14 F -0.115 7.115 15 C -0.211 4.211 16 C 0.101 3.899 17 F -0.116 7.116 18 C -0.080 4.080 19 C 0.056 3.944 20 H 0.035 0.965 21 C -0.194 4.194 22 N -0.338 5.338 23 C -0.375 4.375 24 H 0.049 0.951 25 C -0.184 4.184 26 N -0.585 5.585 27 Si 0.755 3.245 28 H -0.190 1.190 29 H -0.199 1.199 30 H -0.239 1.239 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.047 0.953 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.238 0.762 39 H 0.187 0.813 40 H 0.187 0.813 41 H 0.176 0.824 42 H 0.106 0.894 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.058 0.942 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.650 -4.682 -22.568 25.826 hybrid contribution 0.017 0.132 0.270 0.301 sum 11.668 -4.551 -22.299 25.575 Atomic orbital electron populations 1.21614 0.94845 1.00874 1.00753 1.20714 0.93656 0.93563 0.86576 0.95882 1.22397 0.87739 0.98873 0.98179 1.62132 1.10911 1.49675 1.02963 1.22959 0.99359 0.94801 0.92038 1.21404 1.00864 0.88033 0.83642 0.88878 1.86752 1.34236 1.55456 1.59930 1.20733 1.00574 0.99990 0.94777 1.20928 0.93428 0.93382 0.99104 1.21481 1.02640 1.02468 0.90184 1.17478 0.96104 0.95457 0.81259 1.91528 1.88030 1.88386 1.43547 1.21142 1.01111 1.00451 0.98445 1.17240 0.90270 0.88859 0.93571 1.91523 1.63666 1.59252 1.97162 1.22697 1.00141 0.95626 0.89495 1.20820 0.84523 0.94815 0.94287 0.96509 1.21940 1.00059 0.99613 0.97828 1.44621 1.03379 1.66290 1.19466 1.18162 1.05563 1.27759 0.86017 0.95089 1.26263 0.97913 0.98281 0.95966 1.69978 1.47998 1.41165 0.99313 0.86308 0.80076 0.82062 0.76067 1.18981 1.19917 1.23939 0.94173 0.90708 0.94240 0.89968 0.95324 0.89615 0.88195 0.76213 0.81272 0.81294 0.82408 0.89441 0.92447 0.93714 0.91089 0.94181 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 8.19 71.98 0.59 -4.21 16 2 C 0.16 6.53 3.64 44.81 0.16 6.69 16 3 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 4 C 0.06 1.89 3.83 86.23 0.33 2.22 16 5 N -0.53 -15.85 4.83 -896.16 -4.33 -20.18 16 6 C 0.04 0.77 5.26 86.30 0.45 1.23 16 7 C 0.12 2.53 2.42 29.85 0.07 2.61 16 8 H 0.09 2.43 5.82 -2.38 -0.01 2.42 16 9 O -0.56 -12.13 10.18 -148.98 -1.52 -13.64 16 10 C -0.16 -2.68 5.07 -19.82 -0.10 -2.78 16 11 C -0.05 -0.59 9.30 22.25 0.21 -0.38 16 12 C -0.15 -1.64 10.03 22.32 0.22 -1.42 16 13 C 0.12 1.69 7.30 22.37 0.16 1.86 16 14 F -0.14 -2.16 17.27 44.97 0.78 -1.39 16 15 C -0.19 -3.03 10.01 22.36 0.22 -2.81 16 16 C 0.12 2.22 7.24 22.37 0.16 2.38 16 17 F -0.14 -2.98 16.56 44.97 0.74 -2.23 16 18 C 0.05 1.57 4.38 86.38 0.38 1.95 16 19 C 0.16 6.68 2.45 44.96 0.11 6.79 16 20 H 0.02 0.75 7.34 -2.39 -0.02 0.73 16 21 C -0.14 -5.83 7.80 71.98 0.56 -5.27 16 22 N -0.61 -28.82 2.28 -651.49 -1.48 -30.31 16 23 C -0.25 -13.65 7.31 84.03 0.61 -13.03 16 24 H 0.03 1.96 7.20 -2.91 -0.02 1.94 16 25 C 0.01 0.78 4.00 84.86 0.34 1.12 16 26 N -0.94 -57.70 13.97 21.65 0.30 -57.39 16 27 Si 0.93 46.75 24.51 68.60 1.68 48.43 16 28 H -0.26 -12.50 6.34 99.48 0.63 -11.87 16 29 H -0.27 -13.91 7.11 99.48 0.71 -13.21 16 30 H -0.31 -15.93 7.11 99.48 0.71 -15.23 16 31 H 0.04 1.72 7.83 -2.39 -0.02 1.70 16 32 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.04 1.64 7.37 -2.39 -0.02 1.63 16 34 H 0.08 2.37 8.11 -2.39 -0.02 2.35 16 35 H 0.03 1.03 6.58 -2.39 -0.02 1.02 16 36 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.10 1.64 7.84 -2.39 -0.02 1.62 16 38 H 0.39 5.00 7.32 -74.05 -0.54 4.46 16 39 H 0.17 1.01 6.40 -2.91 -0.02 0.99 16 40 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 41 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 42 H 0.09 2.24 7.93 -2.38 -0.02 2.22 16 43 H 0.06 1.95 5.82 -2.39 -0.01 1.94 16 44 H 0.04 2.09 7.71 -2.39 -0.02 2.07 16 45 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.04 1.92 3.13 -2.39 -0.01 1.92 16 47 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -69.17 361.79 1.05 -68.12 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.39 Total: 11.64 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 4.49 Total: -3.04 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -5.51 Total: -107.88 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -1.52 Total: -13.64 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 1.52 Total: -3.62 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.68 Total: 48.43 kcal Total: -69.17 1.05 -68.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878775458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.908 kcal (2) G-P(sol) polarization free energy of solvation -69.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds