Wall clock time and date at job start Tue Mar 31 2020 23:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.78520 * 2 1 4 4 C 1.53239 * 109.62793 * 239.51235 * 2 1 3 5 5 N 1.46905 * 109.33818 * 186.45837 * 4 2 1 6 6 C 1.46907 * 110.99653 * 187.25358 * 5 4 2 7 7 C 1.52991 * 109.46951 * 76.53732 * 6 5 4 8 8 H 1.08997 * 109.47094 * 300.15402 * 7 6 5 9 9 O 1.42905 * 109.47364 * 60.15387 * 7 6 5 10 10 C 1.50700 * 109.46861 * 180.15306 * 7 6 5 11 11 C 1.38231 * 119.98714 * 264.72040 * 10 7 6 12 12 C 1.38189 * 120.04776 * 179.76877 * 11 10 7 13 13 C 1.38502 * 120.02636 * 0.51002 * 12 11 10 14 14 F 1.35101 * 120.01230 * 179.76475 * 13 12 11 15 15 C 1.38397 * 119.97461 * 359.74647 * 13 12 11 16 16 C 1.38446 * 119.94815 * 0.02562 * 15 13 12 17 17 F 1.35096 * 120.01292 * 180.02562 * 16 15 13 18 18 C 1.46901 * 111.26868 * 63.10437 * 5 4 2 19 19 C 1.53233 * 109.34040 * 296.89743 * 18 5 4 20 20 H 1.09005 * 109.78794 * 173.63762 * 19 18 5 21 21 C 1.53002 * 109.62457 * 294.11651 * 19 18 5 22 22 N 1.47073 * 108.52486 * 53.82649 * 19 18 5 23 23 C 1.36943 * 120.88060 * 128.83547 * 22 19 18 24 24 H 1.08001 * 119.99772 * 212.56148 * 23 22 19 25 25 C 1.38807 * 119.99769 * 32.56951 * 23 22 19 26 26 N 1.31620 * 120.00318 * 11.07240 * 25 23 22 27 27 Si 1.86804 * 120.00025 * 191.07752 * 25 23 22 28 28 H 1.48498 * 109.46878 * 89.99455 * 27 25 23 29 29 H 1.48493 * 109.47357 * 209.99882 * 27 25 23 30 30 H 1.48503 * 109.46822 * 330.00099 * 27 25 23 31 31 H 1.09004 * 109.47279 * 180.48601 * 1 2 3 32 32 H 1.09007 * 109.47080 * 300.48561 * 1 2 3 33 33 H 1.09002 * 109.47431 * 60.48895 * 1 2 3 34 34 H 1.08997 * 109.49346 * 66.49906 * 4 2 1 35 35 H 1.08997 * 109.49235 * 306.41850 * 4 2 1 36 36 H 1.09000 * 109.46482 * 196.53544 * 6 5 4 37 37 H 1.09000 * 109.47012 * 316.53218 * 6 5 4 38 38 H 0.96694 * 113.99695 * 59.99950 * 9 7 6 39 39 H 1.07993 * 119.97737 * 0.02562 * 11 10 7 40 40 H 1.08002 * 119.98782 * 180.25965 * 12 11 10 41 41 H 1.07997 * 120.02917 * 180.02562 * 15 13 12 42 42 H 1.09005 * 109.49249 * 56.85497 * 18 5 4 43 43 H 1.09003 * 109.49273 * 176.93017 * 18 5 4 44 44 H 1.08998 * 109.46660 * 179.03051 * 21 19 18 45 45 H 1.08997 * 109.47302 * 299.02683 * 21 19 18 46 46 H 1.09001 * 109.47106 * 59.03680 * 21 19 18 47 47 H 0.97000 * 120.00478 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0447 -0.7323 -1.2438 5 7 3.5054 -0.8644 -1.1608 6 6 4.0568 -1.4062 -2.4101 7 6 4.0850 -0.3071 -3.4740 8 1 3.0721 0.0557 -3.6484 9 8 4.9064 0.7717 -3.0227 10 6 4.6471 -0.8640 -4.7566 11 6 5.9904 -0.7128 -5.0452 12 6 6.5081 -1.2271 -6.2188 13 6 5.6793 -1.8855 -7.1120 14 9 6.1848 -2.3840 -8.2614 15 6 4.3331 -2.0327 -6.8265 16 6 3.8165 -1.5212 -5.6483 17 9 2.5027 -1.6647 -5.3680 18 6 3.9016 -1.6870 -0.0100 19 6 3.4629 -0.9939 1.2843 20 1 3.6513 -1.6483 2.1354 21 6 4.2416 0.3117 1.4574 22 7 2.0241 -0.7027 1.1938 23 6 1.1672 -1.0757 2.1949 24 1 0.1507 -1.3545 1.9595 25 6 1.6052 -1.0952 3.5119 26 7 2.7621 -0.5534 3.8289 27 14 0.5527 -1.8906 4.8345 28 1 0.9108 -3.3267 4.9548 29 1 0.7915 -1.2104 6.1327 30 1 -0.8808 -1.7670 4.4671 31 1 -0.3634 -1.0277 0.0087 32 1 -0.3634 0.5214 0.8857 33 1 -0.3634 0.5062 -0.8943 34 1 1.7809 -0.1639 -2.1357 35 1 1.5923 -1.7226 -1.2961 36 1 5.0700 -1.7672 -2.2335 37 1 3.4325 -2.2303 -2.7554 38 1 5.8236 0.5209 -2.8472 39 1 6.6367 -0.1961 -4.3513 40 1 7.5587 -1.1122 -6.4414 41 1 3.6861 -2.5463 -7.5222 42 1 3.4233 -2.6641 -0.0795 43 1 4.9845 -1.8111 -0.0072 44 1 3.9153 0.8110 2.3698 45 1 5.3073 0.0930 1.5242 46 1 4.0568 0.9612 0.6018 47 1 3.0683 -0.5674 4.7492 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878775459.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:46 Heat of formation + Delta-G solvation = -78.100911 kcal Electronic energy + Delta-G solvation = -30769.429722 eV Core-core repulsion = 26396.160144 eV Total energy + Delta-G solvation = -4373.269578 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.36812 -49.30072 -39.82767 -38.49519 -36.84951 -34.44421 -32.47578 -31.84628 -31.28340 -30.97080 -28.28100 -27.31145 -26.10906 -24.61550 -23.69880 -23.41291 -22.14895 -21.05089 -20.64596 -18.69643 -18.52907 -17.62983 -17.32534 -16.33069 -16.17998 -16.10961 -15.65055 -15.53667 -15.22093 -15.10593 -14.73338 -14.51115 -14.36162 -14.02384 -13.85414 -13.45647 -13.17483 -13.04515 -12.86512 -12.57296 -12.29690 -12.02509 -11.84838 -11.67926 -11.51365 -11.34680 -11.05646 -10.90743 -10.76467 -10.57927 -10.48871 -10.40975 -10.24767 -9.96284 -9.84849 -9.47908 -9.43973 -9.19490 -8.91207 -8.41481 -7.72534 -6.47963 -5.71355 -3.19750 0.53171 0.60646 2.93526 3.38985 3.46435 3.46887 3.47932 3.97413 4.04670 4.15813 4.29988 4.47139 4.51766 4.70491 4.79862 4.96211 5.17170 5.35024 5.37523 5.40538 5.44723 5.52407 5.56306 5.66319 5.68642 5.87192 5.96179 5.99549 6.13131 6.20204 6.26625 6.34949 6.37801 6.40206 6.49469 6.68789 6.91852 7.04345 7.12045 7.17338 7.32251 7.53839 7.56922 7.68291 7.79901 7.89987 8.06058 8.55458 9.31212 9.90933 10.52554 11.35417 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.024014 B = 0.002644 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.709416 B =10588.430969 C =11022.543979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.173 3.827 3 H 0.035 0.965 4 C 0.049 3.951 5 N -0.516 5.516 6 C 0.028 3.972 7 C 0.158 3.842 8 H 0.111 0.889 9 O -0.531 6.531 10 C -0.155 4.155 11 C -0.054 4.054 12 C -0.159 4.159 13 C 0.124 3.876 14 F -0.133 7.133 15 C -0.191 4.191 16 C 0.139 3.861 17 F -0.125 7.125 18 C 0.042 3.958 19 C 0.202 3.798 20 H 0.089 0.911 21 C -0.136 4.136 22 N -0.585 5.585 23 C -0.249 4.249 24 H 0.066 0.934 25 C 0.006 3.994 26 N -0.898 5.898 27 Si 0.899 3.101 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.280 1.280 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.026 0.974 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.369 0.631 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.149 0.851 42 H 0.021 0.979 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.017 0.983 46 H 0.035 0.965 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.458 -1.719 -20.013 21.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.066 3.934 3 H 0.052 0.948 4 C -0.080 4.080 5 N -0.240 5.240 6 C -0.101 4.101 7 C 0.098 3.902 8 H 0.129 0.871 9 O -0.335 6.335 10 C -0.157 4.157 11 C -0.072 4.072 12 C -0.178 4.178 13 C 0.105 3.895 14 F -0.111 7.111 15 C -0.210 4.210 16 C 0.119 3.881 17 F -0.104 7.104 18 C -0.087 4.087 19 C 0.095 3.905 20 H 0.106 0.894 21 C -0.195 4.195 22 N -0.308 5.308 23 C -0.379 4.379 24 H 0.084 0.916 25 C -0.193 4.193 26 N -0.543 5.543 27 Si 0.730 3.270 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.206 1.206 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.216 0.784 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.166 0.834 42 H 0.039 0.961 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.036 0.964 46 H 0.055 0.945 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.107 -0.932 -19.843 21.098 hybrid contribution -0.438 -1.853 0.330 1.932 sum 6.669 -2.785 -19.513 20.808 Atomic orbital electron populations 1.21791 0.96180 1.01195 1.00312 1.20455 0.92121 0.94342 0.86496 0.94759 1.22716 0.86778 0.98971 0.99580 1.61820 1.11077 1.50139 1.00934 1.22747 1.00556 0.94992 0.91848 1.20686 0.95091 0.87680 0.86792 0.87139 1.86713 1.24410 1.34303 1.88112 1.20919 0.94662 1.01368 0.98762 1.20674 0.93652 0.96704 0.96157 1.21194 1.00961 1.00924 0.94758 1.17306 0.91379 0.97346 0.83473 1.91534 1.87431 1.85299 1.46855 1.21031 0.95287 1.05945 0.98761 1.17081 0.78416 0.98789 0.93831 1.91558 1.31778 1.93530 1.93485 1.22900 0.98402 0.94404 0.92970 1.20318 0.83177 0.95120 0.91872 0.89360 1.21982 0.96216 0.99457 1.01820 1.44210 1.03391 1.65084 1.18104 1.19136 0.95123 1.38253 0.85387 0.91611 1.25170 0.97483 0.99475 0.97151 1.69961 1.20712 1.46115 1.17463 0.86344 0.80099 0.78906 0.81679 1.21683 1.21818 1.20587 0.93105 0.91811 0.94331 0.92364 0.95590 0.90932 0.94383 0.78383 0.83659 0.83830 0.83356 0.96053 0.92348 0.90574 0.96398 0.94543 0.93813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 7.97 37.15 0.30 -2.32 16 2 C 0.17 3.64 3.26 -67.49 -0.22 3.42 16 3 H 0.03 0.79 7.63 -51.93 -0.40 0.39 16 4 C 0.05 0.89 4.74 -3.70 -0.02 0.87 16 5 N -0.52 -8.87 3.91 -234.32 -0.92 -9.78 16 6 C 0.03 0.37 4.66 -3.82 -0.02 0.36 16 7 C 0.16 1.90 3.05 -27.89 -0.09 1.81 16 8 H 0.11 1.49 6.50 -51.93 -0.34 1.15 16 9 O -0.53 -6.59 12.85 -35.23 -0.45 -7.04 16 10 C -0.16 -1.56 5.07 -104.54 -0.53 -2.09 16 11 C -0.05 -0.42 9.30 -39.60 -0.37 -0.79 16 12 C -0.16 -1.19 10.03 -39.50 -0.40 -1.59 16 13 C 0.12 1.09 7.30 -39.43 -0.29 0.80 16 14 F -0.13 -1.22 17.27 2.25 0.04 -1.18 16 15 C -0.19 -1.73 10.01 -39.45 -0.39 -2.13 16 16 C 0.14 1.45 7.24 -39.42 -0.29 1.16 16 17 F -0.13 -1.48 16.57 2.25 0.04 -1.44 16 18 C 0.04 0.81 4.97 -3.70 -0.02 0.79 16 19 C 0.20 4.66 2.34 -67.50 -0.16 4.50 16 20 H 0.09 2.32 6.39 -51.93 -0.33 1.99 16 21 C -0.14 -3.07 8.95 37.16 0.33 -2.74 16 22 N -0.58 -14.22 2.71 -157.02 -0.43 -14.64 16 23 C -0.25 -6.60 8.56 -15.06 -0.13 -6.73 16 24 H 0.07 1.73 6.33 -52.49 -0.33 1.40 16 25 C 0.01 0.16 5.04 -17.43 -0.09 0.07 16 26 N -0.90 -25.05 9.63 55.49 0.53 -24.51 16 27 Si 0.90 21.45 29.57 -169.99 -5.03 16.42 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 30 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 31 H 0.05 0.98 7.50 -51.93 -0.39 0.59 16 32 H 0.06 1.31 7.65 -51.92 -0.40 0.91 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.96 6.73 -51.93 -0.35 0.61 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.88 7.76 -51.93 -0.40 0.48 16 37 H 0.04 0.53 7.99 -51.93 -0.41 0.12 16 38 H 0.37 3.23 7.32 45.56 0.33 3.56 16 39 H 0.15 0.79 6.40 -52.49 -0.34 0.46 16 40 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.06 1.01 7.89 -51.93 -0.41 0.60 16 44 H 0.08 1.97 6.64 -51.93 -0.34 1.63 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.04 0.81 7.08 -51.93 -0.37 0.44 16 47 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -29.36 373.11 -9.10 -38.46 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.15 Total: 2.70 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -2.37 Total: -4.60 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.81 Total: -48.94 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.45 Total: -7.04 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.08 Total: -2.62 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.36 -9.10 -38.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878775459.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.642 kcal (2) G-P(sol) polarization free energy of solvation -29.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds