Wall clock time and date at job start Tue Mar 31 2020 23:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.78223 * 2 1 4 4 C 1.53240 * 109.62977 * 239.51891 * 2 1 3 5 5 N 1.46895 * 109.34095 * 186.45946 * 4 2 1 6 6 C 1.46904 * 111.00080 * 187.25217 * 5 4 2 7 7 C 1.52998 * 109.46940 * 169.99862 * 6 5 4 8 8 H 1.08995 * 109.47481 * 59.99940 * 7 6 5 9 9 O 1.42906 * 109.47351 * 300.00039 * 7 6 5 10 10 C 1.50704 * 109.46819 * 179.97438 * 7 6 5 11 11 C 1.38203 * 119.99941 * 95.21324 * 10 7 6 12 12 C 1.38434 * 119.99911 * 180.25363 * 11 10 7 13 13 F 1.35096 * 120.00139 * 179.76778 * 12 11 10 14 14 C 1.38464 * 119.99760 * 359.78609 * 12 11 10 15 15 C 1.38162 * 120.00509 * 0.02562 * 14 12 11 16 16 C 1.38430 * 120.00099 * 274.99884 * 10 7 6 17 17 F 1.35103 * 119.99578 * 359.97438 * 16 10 7 18 18 C 1.46901 * 111.26963 * 63.10187 * 5 4 2 19 19 C 1.53234 * 109.33859 * 296.89597 * 18 5 4 20 20 H 1.09002 * 109.78900 * 173.63908 * 19 18 5 21 21 C 1.53001 * 109.63197 * 294.11973 * 19 18 5 22 22 N 1.47072 * 109.62900 * 120.48529 * 2 1 3 23 23 C 1.36932 * 120.88455 * 350.91799 * 22 2 1 24 24 H 1.08000 * 119.99838 * 26.66647 * 23 22 2 25 25 C 1.38813 * 120.00467 * 206.66402 * 23 22 2 26 26 N 1.31622 * 119.99945 * 17.60854 * 25 23 22 27 27 Si 1.86801 * 120.00391 * 197.61308 * 25 23 22 28 28 H 1.48499 * 109.47168 * 94.10388 * 27 25 23 29 29 H 1.48497 * 109.47343 * 214.10678 * 27 25 23 30 30 H 1.48504 * 109.46865 * 334.10425 * 27 25 23 31 31 H 1.09003 * 109.47116 * 180.48495 * 1 2 3 32 32 H 1.08998 * 109.47195 * 300.48134 * 1 2 3 33 33 H 1.09004 * 109.47527 * 60.48201 * 1 2 3 34 34 H 1.08995 * 109.49435 * 66.49461 * 4 2 1 35 35 H 1.08999 * 109.49140 * 306.41859 * 4 2 1 36 36 H 1.08997 * 109.46684 * 50.00215 * 6 5 4 37 37 H 1.09002 * 109.46732 * 289.99833 * 6 5 4 38 38 H 0.96702 * 113.99424 * 300.00114 * 9 7 6 39 39 H 1.07999 * 120.00266 * 0.04493 * 11 10 7 40 40 H 1.08001 * 120.00023 * 179.97438 * 14 12 11 41 41 H 1.07998 * 120.00711 * 179.97438 * 15 14 12 42 42 H 1.08994 * 109.49219 * 56.86069 * 18 5 4 43 43 H 1.09005 * 109.49048 * 176.93546 * 18 5 4 44 44 H 1.08996 * 109.47577 * 179.03560 * 21 19 18 45 45 H 1.09005 * 109.46876 * 299.02981 * 21 19 18 46 46 H 1.08998 * 109.47088 * 59.02877 * 21 19 18 47 47 H 0.97003 * 120.00327 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0448 -0.7321 -1.2439 5 7 3.5054 -0.8643 -1.1609 6 6 4.0568 -1.4060 -2.4102 7 6 5.5827 -1.2972 -2.3835 8 1 5.9727 -1.8642 -1.5383 9 8 5.9602 0.0747 -2.2516 10 6 6.1483 -1.8535 -3.6648 11 6 6.4400 -1.0060 -4.7167 12 6 6.9547 -1.5176 -5.8956 13 9 7.2355 -0.6898 -6.9256 14 6 7.1814 -2.8780 -6.0191 15 6 6.8935 -3.7248 -4.9661 16 6 6.3799 -3.2129 -3.7865 17 9 6.0993 -4.0407 -2.7563 18 6 3.9016 -1.6870 -0.0102 19 6 3.4629 -0.9939 1.2841 20 1 3.6514 -1.6483 2.1353 21 6 4.2415 0.3117 1.4575 22 7 2.0240 -0.7028 1.1938 23 6 1.1671 -1.0765 2.1943 24 1 0.1268 -1.2635 1.9725 25 6 1.6355 -1.2152 3.4936 26 7 2.7817 -0.6697 3.8417 27 14 0.6393 -2.1760 4.7482 28 1 1.1134 -3.5828 4.7843 29 1 0.8084 -1.5621 6.0897 30 1 -0.7959 -2.1469 4.3678 31 1 -0.3633 -1.0277 0.0087 32 1 -0.3633 0.5213 0.8856 33 1 -0.3634 0.5063 -0.8943 34 1 1.7810 -0.1638 -2.1357 35 1 1.5924 -1.7224 -1.2963 36 1 3.6668 -0.8389 -3.2554 37 1 3.7688 -2.4524 -2.5107 38 1 5.6464 0.6399 -2.9708 39 1 6.2633 0.0551 -4.6204 40 1 7.5825 -3.2773 -6.9389 41 1 7.0699 -4.7859 -5.0626 42 1 3.4234 -2.6640 -0.0798 43 1 4.9845 -1.8110 -0.0075 44 1 3.9154 0.8109 2.3698 45 1 5.3073 0.0929 1.5242 46 1 4.0568 0.9612 0.6019 47 1 3.1093 -0.7669 4.7496 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878775487.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:51 Heat of formation + Delta-G solvation = -75.425664 kcal Electronic energy + Delta-G solvation = -30923.980762 eV Core-core repulsion = 26550.827191 eV Total energy + Delta-G solvation = -4373.153571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.27536 -49.20000 -39.82344 -38.52313 -36.90824 -34.45737 -32.53920 -32.06596 -31.19671 -30.51576 -28.46849 -27.42284 -25.93722 -24.96608 -23.69199 -23.11505 -22.09149 -21.46390 -20.35341 -18.54384 -18.42710 -17.64868 -17.58778 -16.41502 -16.16212 -16.06527 -15.65051 -15.51390 -15.03973 -14.83156 -14.65670 -14.50914 -14.38260 -14.02628 -13.76679 -13.47723 -13.20256 -13.13655 -12.89345 -12.76114 -12.38316 -11.89159 -11.80110 -11.61612 -11.50571 -11.37008 -11.08889 -10.95146 -10.83659 -10.57422 -10.48357 -10.38664 -10.17271 -9.97137 -9.83872 -9.57078 -9.33639 -9.14000 -8.85794 -8.40633 -7.73608 -6.56952 -5.70266 -3.11198 0.54844 0.61055 2.93912 3.40737 3.48314 3.49027 3.70136 3.81512 4.01515 4.21097 4.31075 4.45456 4.54117 4.72202 4.80070 4.95573 5.13475 5.26695 5.35671 5.43155 5.48683 5.54565 5.58976 5.64769 5.68416 5.82743 5.91559 6.01142 6.12931 6.14650 6.27780 6.34380 6.37384 6.39241 6.47585 6.68960 6.93375 6.99912 7.10845 7.22671 7.31683 7.51335 7.59281 7.66573 7.79914 7.91818 8.04564 8.52183 9.30528 9.93112 10.51446 11.36986 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.020255 B = 0.002831 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.072897 B = 9888.732297 C =10261.572854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.173 3.827 3 H 0.034 0.966 4 C 0.050 3.950 5 N -0.516 5.516 6 C 0.029 3.971 7 C 0.153 3.847 8 H 0.117 0.883 9 O -0.529 6.529 10 C -0.116 4.116 11 C -0.118 4.118 12 C 0.092 3.908 13 F -0.135 7.135 14 C -0.129 4.129 15 C -0.123 4.123 16 C 0.098 3.902 17 F -0.128 7.128 18 C 0.040 3.960 19 C 0.199 3.801 20 H 0.093 0.907 21 C -0.132 4.132 22 N -0.585 5.585 23 C -0.249 4.249 24 H 0.070 0.930 25 C 0.002 3.998 26 N -0.896 5.896 27 Si 0.897 3.103 28 H -0.290 1.290 29 H -0.293 1.293 30 H -0.281 1.281 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.026 0.974 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.369 0.631 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.022 0.978 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.020 0.980 46 H 0.035 0.965 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.900 -3.189 -20.112 21.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.066 3.934 3 H 0.052 0.948 4 C -0.080 4.080 5 N -0.240 5.240 6 C -0.100 4.100 7 C 0.093 3.907 8 H 0.134 0.866 9 O -0.333 6.333 10 C -0.118 4.118 11 C -0.137 4.137 12 C 0.073 3.927 13 F -0.114 7.114 14 C -0.148 4.148 15 C -0.142 4.142 16 C 0.079 3.921 17 F -0.107 7.107 18 C -0.089 4.089 19 C 0.093 3.907 20 H 0.111 0.889 21 C -0.191 4.191 22 N -0.308 5.308 23 C -0.378 4.378 24 H 0.088 0.912 25 C -0.197 4.197 26 N -0.541 5.541 27 Si 0.728 3.272 28 H -0.217 1.217 29 H -0.219 1.219 30 H -0.206 1.206 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.216 0.784 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.165 0.835 42 H 0.040 0.960 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.039 0.961 46 H 0.054 0.946 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.412 -2.936 -19.307 21.263 hybrid contribution -0.961 -1.292 -0.064 1.612 sum 7.450 -4.228 -19.370 21.180 Atomic orbital electron populations 1.21802 0.96155 1.01270 1.00315 1.20439 0.92116 0.94294 0.86584 0.94843 1.22682 0.86674 0.99071 0.99547 1.61870 1.10758 1.50292 1.01096 1.22719 0.93834 0.98688 0.94755 1.20791 0.93466 0.83840 0.92601 0.86598 1.86737 1.78423 1.17220 1.50936 1.20680 1.00625 0.92178 0.98336 1.20767 1.00455 1.01331 0.91099 1.17598 1.01629 0.88102 0.85396 1.91527 1.91404 1.71558 1.56866 1.20988 1.02107 0.91365 1.00339 1.21006 1.00262 1.01374 0.91511 1.17496 1.01404 0.87427 0.85811 1.91556 1.91217 1.71108 1.56787 1.22918 0.98704 0.94321 0.92983 1.20378 0.82814 0.95334 0.92201 0.88922 1.21916 0.96535 0.99312 1.01349 1.44293 1.03560 1.65055 1.17938 1.19199 0.92959 1.39155 0.86508 0.91232 1.24993 0.97721 1.00280 0.96685 1.70030 1.21428 1.44774 1.17878 0.86354 0.79684 0.80006 0.81185 1.21746 1.21930 1.20623 0.93005 0.91820 0.94316 0.92354 0.95549 0.90917 0.94531 0.78395 0.83533 0.83702 0.83525 0.95965 0.92110 0.91078 0.96112 0.94615 0.93846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 7.93 37.16 0.29 -2.27 16 2 C 0.17 3.58 3.26 -67.50 -0.22 3.36 16 3 H 0.03 0.75 7.63 -51.93 -0.40 0.35 16 4 C 0.05 0.88 4.91 -3.70 -0.02 0.86 16 5 N -0.52 -8.95 3.98 -234.33 -0.93 -9.89 16 6 C 0.03 0.40 4.61 -3.82 -0.02 0.38 16 7 C 0.15 1.95 2.86 -27.88 -0.08 1.87 16 8 H 0.12 1.69 6.05 -51.93 -0.31 1.37 16 9 O -0.53 -6.96 12.85 -35.23 -0.45 -7.41 16 10 C -0.12 -1.24 5.07 -104.56 -0.53 -1.77 16 11 C -0.12 -1.08 9.28 -39.52 -0.37 -1.44 16 12 C 0.09 0.82 7.30 -39.43 -0.29 0.53 16 13 F -0.14 -1.27 17.27 2.25 0.04 -1.23 16 14 C -0.13 -0.97 10.02 -39.53 -0.40 -1.37 16 15 C -0.12 -0.99 10.02 -39.52 -0.40 -1.39 16 16 C 0.10 1.04 7.24 -39.43 -0.29 0.75 16 17 F -0.13 -1.57 16.56 2.25 0.04 -1.54 16 18 C 0.04 0.78 4.85 -3.70 -0.02 0.77 16 19 C 0.20 4.70 2.36 -67.49 -0.16 4.54 16 20 H 0.09 2.49 6.13 -51.93 -0.32 2.17 16 21 C -0.13 -3.07 8.96 37.16 0.33 -2.74 16 22 N -0.59 -14.29 2.73 -157.01 -0.43 -14.72 16 23 C -0.25 -6.61 8.72 -15.06 -0.13 -6.74 16 24 H 0.07 1.82 6.17 -52.49 -0.32 1.50 16 25 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 26 N -0.90 -25.29 9.81 55.49 0.54 -24.75 16 27 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 30 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 31 H 0.05 0.98 7.54 -51.93 -0.39 0.59 16 32 H 0.06 1.28 7.58 -51.93 -0.39 0.89 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.90 7.99 -51.93 -0.41 0.48 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.88 7.97 -51.93 -0.41 0.46 16 37 H 0.04 0.52 8.12 -51.93 -0.42 0.10 16 38 H 0.37 3.48 7.33 45.56 0.33 3.81 16 39 H 0.15 1.08 6.40 -52.49 -0.34 0.74 16 40 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 41 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 1.14 6.16 -51.93 -0.32 0.82 16 44 H 0.07 1.87 6.89 -51.93 -0.36 1.51 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.03 0.81 7.08 -51.93 -0.37 0.44 16 47 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 372.46 15.07 5.61 5.61 Total: -1.00 -29.70 372.46 -9.08 -38.78 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.11 Total: 3.26 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -2.36 Total: -4.70 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.82 Total: -49.35 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.45 Total: -7.41 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.08 Total: -2.77 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.70 -9.08 -38.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878775487.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.643 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds