Wall clock time and date at job start Tue Mar 31 2020 23:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.78223 * 2 1 4 4 C 1.53240 * 109.62977 * 239.51891 * 2 1 3 5 5 N 1.46895 * 109.34095 * 186.45946 * 4 2 1 6 6 C 1.46904 * 111.00080 * 187.25217 * 5 4 2 7 7 C 1.52998 * 109.46940 * 169.99862 * 6 5 4 8 8 H 1.08995 * 109.47481 * 59.99940 * 7 6 5 9 9 O 1.42906 * 109.47351 * 300.00039 * 7 6 5 10 10 C 1.50704 * 109.46819 * 179.97438 * 7 6 5 11 11 C 1.38203 * 119.99941 * 95.21324 * 10 7 6 12 12 C 1.38434 * 119.99911 * 180.25363 * 11 10 7 13 13 F 1.35096 * 120.00139 * 179.76778 * 12 11 10 14 14 C 1.38464 * 119.99760 * 359.78609 * 12 11 10 15 15 C 1.38162 * 120.00509 * 0.02562 * 14 12 11 16 16 C 1.38430 * 120.00099 * 274.99884 * 10 7 6 17 17 F 1.35103 * 119.99578 * 359.97438 * 16 10 7 18 18 C 1.46901 * 111.26963 * 63.10187 * 5 4 2 19 19 C 1.53234 * 109.33859 * 296.89597 * 18 5 4 20 20 H 1.09002 * 109.78900 * 173.63908 * 19 18 5 21 21 C 1.53001 * 109.63197 * 294.11973 * 19 18 5 22 22 N 1.47072 * 109.62900 * 120.48529 * 2 1 3 23 23 C 1.36932 * 120.88455 * 350.91799 * 22 2 1 24 24 H 1.08000 * 119.99838 * 26.66647 * 23 22 2 25 25 C 1.38813 * 120.00467 * 206.66402 * 23 22 2 26 26 N 1.31622 * 119.99945 * 17.60854 * 25 23 22 27 27 Si 1.86801 * 120.00391 * 197.61308 * 25 23 22 28 28 H 1.48499 * 109.47168 * 94.10388 * 27 25 23 29 29 H 1.48497 * 109.47343 * 214.10678 * 27 25 23 30 30 H 1.48504 * 109.46865 * 334.10425 * 27 25 23 31 31 H 1.09003 * 109.47116 * 180.48495 * 1 2 3 32 32 H 1.08998 * 109.47195 * 300.48134 * 1 2 3 33 33 H 1.09004 * 109.47527 * 60.48201 * 1 2 3 34 34 H 1.08995 * 109.49435 * 66.49461 * 4 2 1 35 35 H 1.08999 * 109.49140 * 306.41859 * 4 2 1 36 36 H 1.08997 * 109.46684 * 50.00215 * 6 5 4 37 37 H 1.09002 * 109.46732 * 289.99833 * 6 5 4 38 38 H 0.96702 * 113.99424 * 300.00114 * 9 7 6 39 39 H 1.07999 * 120.00266 * 0.04493 * 11 10 7 40 40 H 1.08001 * 120.00023 * 179.97438 * 14 12 11 41 41 H 1.07998 * 120.00711 * 179.97438 * 15 14 12 42 42 H 1.08994 * 109.49219 * 56.86069 * 18 5 4 43 43 H 1.09005 * 109.49048 * 176.93546 * 18 5 4 44 44 H 1.08996 * 109.47577 * 179.03560 * 21 19 18 45 45 H 1.09005 * 109.46876 * 299.02981 * 21 19 18 46 46 H 1.08998 * 109.47088 * 59.02877 * 21 19 18 47 47 H 0.97003 * 120.00327 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0448 -0.7321 -1.2439 5 7 3.5054 -0.8643 -1.1609 6 6 4.0568 -1.4060 -2.4102 7 6 5.5827 -1.2972 -2.3835 8 1 5.9727 -1.8642 -1.5383 9 8 5.9602 0.0747 -2.2516 10 6 6.1483 -1.8535 -3.6648 11 6 6.4400 -1.0060 -4.7167 12 6 6.9547 -1.5176 -5.8956 13 9 7.2355 -0.6898 -6.9256 14 6 7.1814 -2.8780 -6.0191 15 6 6.8935 -3.7248 -4.9661 16 6 6.3799 -3.2129 -3.7865 17 9 6.0993 -4.0407 -2.7563 18 6 3.9016 -1.6870 -0.0102 19 6 3.4629 -0.9939 1.2841 20 1 3.6514 -1.6483 2.1353 21 6 4.2415 0.3117 1.4575 22 7 2.0240 -0.7028 1.1938 23 6 1.1671 -1.0765 2.1943 24 1 0.1268 -1.2635 1.9725 25 6 1.6355 -1.2152 3.4936 26 7 2.7817 -0.6697 3.8417 27 14 0.6393 -2.1760 4.7482 28 1 1.1134 -3.5828 4.7843 29 1 0.8084 -1.5621 6.0897 30 1 -0.7959 -2.1469 4.3678 31 1 -0.3633 -1.0277 0.0087 32 1 -0.3633 0.5213 0.8856 33 1 -0.3634 0.5063 -0.8943 34 1 1.7810 -0.1638 -2.1357 35 1 1.5924 -1.7224 -1.2963 36 1 3.6668 -0.8389 -3.2554 37 1 3.7688 -2.4524 -2.5107 38 1 5.6464 0.6399 -2.9708 39 1 6.2633 0.0551 -4.6204 40 1 7.5825 -3.2773 -6.9389 41 1 7.0699 -4.7859 -5.0626 42 1 3.4234 -2.6640 -0.0798 43 1 4.9845 -1.8110 -0.0075 44 1 3.9154 0.8109 2.3698 45 1 5.3073 0.0929 1.5242 46 1 4.0568 0.9612 0.6019 47 1 3.1093 -0.7669 4.7496 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878775487.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:50 Heat of formation + Delta-G solvation = -93.827473 kcal Electronic energy + Delta-G solvation = -30924.778724 eV Core-core repulsion = 26550.827191 eV Total energy + Delta-G solvation = -4373.951533 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.03461 -49.95791 -40.77733 -39.86439 -37.98365 -36.00785 -34.25331 -33.25305 -32.68029 -31.27202 -29.94148 -28.89124 -27.54270 -26.42573 -25.21176 -23.89521 -23.30111 -22.79294 -21.77542 -20.35388 -19.20787 -18.42185 -18.35798 -17.98940 -17.29041 -17.11769 -16.89582 -16.40838 -16.25475 -16.11940 -15.93587 -15.65092 -15.45380 -15.34549 -15.19485 -14.84218 -14.64116 -14.39826 -14.04461 -13.65274 -13.58904 -13.29362 -13.20132 -12.93099 -12.88080 -12.79014 -12.73191 -12.49018 -12.27977 -12.24802 -12.15506 -12.01489 -11.83474 -11.61981 -11.33498 -11.12127 -10.93493 -10.43875 -10.18153 -9.60410 -9.18408 -8.52823 -7.76027 -5.18383 -0.16246 -0.03994 1.46957 1.49173 1.56663 2.25438 2.55288 2.80629 3.11047 3.13701 3.35889 3.37752 3.53516 3.60962 3.67429 3.87399 3.97104 4.07646 4.17137 4.25038 4.35132 4.49360 4.54153 4.60372 4.61842 4.66332 4.72532 4.79351 4.87179 4.88439 4.90680 4.94701 4.99432 5.01007 5.10100 5.14636 5.26865 5.35935 5.44942 5.57105 5.70746 5.72950 5.79203 6.01418 6.19946 6.27576 6.50145 6.82203 7.26376 7.97743 8.51085 9.28944 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.020255 B = 0.002831 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.072897 B = 9888.732297 C =10261.572854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.164 3.836 3 H 0.020 0.980 4 C 0.058 3.942 5 N -0.520 5.520 6 C 0.034 3.966 7 C 0.162 3.838 8 H 0.091 0.909 9 O -0.546 6.546 10 C -0.126 4.126 11 C -0.116 4.116 12 C 0.085 3.915 13 F -0.138 7.138 14 C -0.117 4.117 15 C -0.117 4.117 16 C 0.077 3.923 17 F -0.145 7.145 18 C 0.056 3.944 19 C 0.198 3.802 20 H 0.053 0.947 21 C -0.111 4.111 22 N -0.601 5.601 23 C -0.251 4.251 24 H 0.072 0.928 25 C -0.051 4.051 26 N -0.922 5.922 27 Si 0.955 3.045 28 H -0.293 1.293 29 H -0.299 1.299 30 H -0.271 1.271 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.019 0.981 36 H 0.099 0.901 37 H 0.033 0.967 38 H 0.385 0.615 39 H 0.162 0.838 40 H 0.174 0.826 41 H 0.170 0.830 42 H 0.009 0.991 43 H 0.069 0.931 44 H 0.035 0.965 45 H 0.028 0.972 46 H 0.039 0.961 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.851 -3.495 -23.361 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.058 3.942 3 H 0.037 0.963 4 C -0.071 4.071 5 N -0.244 5.244 6 C -0.094 4.094 7 C 0.102 3.898 8 H 0.109 0.891 9 O -0.353 6.353 10 C -0.128 4.128 11 C -0.135 4.135 12 C 0.066 3.934 13 F -0.117 7.117 14 C -0.136 4.136 15 C -0.135 4.135 16 C 0.058 3.942 17 F -0.123 7.123 18 C -0.073 4.073 19 C 0.091 3.909 20 H 0.071 0.929 21 C -0.170 4.170 22 N -0.325 5.325 23 C -0.381 4.381 24 H 0.090 0.910 25 C -0.246 4.246 26 N -0.569 5.569 27 Si 0.785 3.215 28 H -0.220 1.220 29 H -0.226 1.226 30 H -0.195 1.195 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.037 0.963 36 H 0.117 0.883 37 H 0.051 0.949 38 H 0.235 0.765 39 H 0.180 0.820 40 H 0.191 0.809 41 H 0.188 0.812 42 H 0.027 0.973 43 H 0.087 0.913 44 H 0.054 0.946 45 H 0.047 0.953 46 H 0.058 0.942 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.347 -3.234 -22.600 24.308 hybrid contribution -0.908 -1.151 0.830 1.685 sum 7.439 -4.384 -21.769 23.419 Atomic orbital electron populations 1.21706 0.94575 1.01110 1.01224 1.20661 0.93560 0.93532 0.86413 0.96270 1.22555 0.86738 0.98700 0.99100 1.61809 1.10725 1.50029 1.01850 1.22778 0.94555 0.98703 0.93392 1.20486 0.92617 0.83650 0.93039 0.89113 1.86700 1.78719 1.17626 1.52227 1.20420 1.02108 0.92449 0.97821 1.20887 0.99917 1.01932 0.90724 1.17742 1.01785 0.88678 0.85217 1.91525 1.91444 1.71766 1.56917 1.21318 1.00513 0.90683 1.01043 1.21261 0.99082 1.02714 0.90459 1.17837 1.02585 0.87428 0.86378 1.91516 1.91547 1.71545 1.57708 1.22552 0.98950 0.93378 0.92438 1.20230 0.82980 0.94804 0.92876 0.92855 1.21666 0.96810 0.98992 0.99557 1.44534 1.03621 1.65691 1.18645 1.19481 0.93383 1.38118 0.87109 0.91014 1.25655 0.98913 1.01633 0.98424 1.70195 1.22869 1.46203 1.17627 0.85425 0.78929 0.78343 0.78772 1.22026 1.22610 1.19548 0.93542 0.93930 0.90440 0.88828 0.96280 0.88272 0.94862 0.76524 0.82029 0.80853 0.81209 0.97262 0.91304 0.94563 0.95331 0.94159 0.94648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 7.93 71.98 0.57 -4.04 16 2 C 0.16 6.69 3.26 44.96 0.15 6.84 16 3 H 0.02 0.85 7.63 -2.38 -0.02 0.84 16 4 C 0.06 1.95 4.91 86.38 0.42 2.37 16 5 N -0.52 -17.36 3.98 -895.28 -3.56 -20.92 16 6 C 0.03 0.87 4.61 86.30 0.40 1.26 16 7 C 0.16 3.95 2.86 29.85 0.09 4.03 16 8 H 0.09 2.66 6.05 -2.39 -0.01 2.64 16 9 O -0.55 -13.49 12.85 -148.98 -1.91 -15.41 16 10 C -0.13 -2.48 5.07 -19.83 -0.10 -2.58 16 11 C -0.12 -1.83 9.28 22.31 0.21 -1.62 16 12 C 0.09 1.26 7.30 22.37 0.16 1.42 16 13 F -0.14 -2.21 17.27 44.97 0.78 -1.44 16 14 C -0.12 -1.36 10.02 22.31 0.22 -1.13 16 15 C -0.12 -1.57 10.02 22.31 0.22 -1.34 16 16 C 0.08 1.52 7.24 22.37 0.16 1.68 16 17 F -0.14 -3.49 16.56 44.97 0.74 -2.74 16 18 C 0.06 2.24 4.85 86.38 0.42 2.66 16 19 C 0.20 9.60 2.36 44.96 0.11 9.71 16 20 H 0.05 3.01 6.13 -2.39 -0.01 2.99 16 21 C -0.11 -5.32 8.96 71.98 0.65 -4.67 16 22 N -0.60 -29.85 2.73 -650.67 -1.78 -31.62 16 23 C -0.25 -13.58 8.72 84.03 0.73 -12.85 16 24 H 0.07 3.78 6.17 -2.91 -0.02 3.77 16 25 C -0.05 -2.83 4.92 84.86 0.42 -2.42 16 26 N -0.92 -54.19 9.81 21.65 0.21 -53.97 16 27 Si 0.96 45.52 29.59 68.60 2.03 47.55 16 28 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 29 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 30 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 31 H 0.05 1.70 7.54 -2.39 -0.02 1.68 16 32 H 0.04 1.68 7.58 -2.39 -0.02 1.66 16 33 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.09 2.51 7.99 -2.39 -0.02 2.49 16 35 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.10 2.03 7.97 -2.39 -0.02 2.01 16 37 H 0.03 0.90 8.12 -2.39 -0.02 0.88 16 38 H 0.38 6.33 7.33 -74.06 -0.54 5.78 16 39 H 0.16 1.93 6.40 -2.91 -0.02 1.91 16 40 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 41 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 42 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.07 2.62 6.16 -2.38 -0.01 2.61 16 44 H 0.04 1.96 6.89 -2.39 -0.02 1.94 16 45 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 46 H 0.04 1.84 7.08 -2.39 -0.02 1.82 16 47 H 0.24 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -66.44 372.46 1.79 -64.65 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.46 Total: 14.57 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 4.82 Total: -0.67 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -5.13 Total: -106.52 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -1.91 Total: -15.41 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 1.52 Total: -4.18 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -66.44 1.79 -64.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878775487.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.173 kcal (2) G-P(sol) polarization free energy of solvation -66.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds