Wall clock time and date at job start Tue Mar 31 2020 23:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.78296 * 2 1 4 4 C 1.52785 * 109.55385 * 239.77345 * 2 1 3 5 5 N 1.46908 * 109.41820 * 186.60722 * 4 2 1 6 6 C 1.46899 * 110.99739 * 187.11489 * 5 4 2 7 7 C 1.53008 * 109.47075 * 308.85101 * 6 5 4 8 8 H 1.09000 * 109.47011 * 54.61786 * 7 6 5 9 9 O 1.42908 * 109.46881 * 294.62066 * 7 6 5 10 10 C 1.50694 * 109.46993 * 174.62248 * 7 6 5 11 11 C 1.38203 * 120.00036 * 94.72440 * 10 7 6 12 12 C 1.38435 * 119.99448 * 179.76620 * 11 10 7 13 13 F 1.35101 * 119.99490 * 180.23238 * 12 11 10 14 14 C 1.38465 * 120.00282 * 0.52932 * 12 11 10 15 15 C 1.38167 * 119.99949 * 359.72098 * 14 12 11 16 16 C 1.38436 * 119.99647 * 274.99589 * 10 7 6 17 17 F 1.35095 * 119.99969 * 359.97438 * 16 10 7 18 18 C 1.46898 * 111.26628 * 62.96506 * 5 4 2 19 19 C 1.53241 * 109.33811 * 296.89177 * 18 5 4 20 20 H 1.08999 * 109.79064 * 294.02211 * 19 18 5 21 21 C 1.53003 * 109.62309 * 173.54529 * 19 18 5 22 22 N 1.47072 * 108.52349 * 53.83488 * 19 18 5 23 23 C 1.36936 * 120.88082 * 128.81234 * 22 19 18 24 24 H 1.07990 * 120.00257 * 306.28277 * 23 22 19 25 25 C 1.38812 * 119.99513 * 126.28594 * 23 22 19 26 26 N 1.31618 * 120.00244 * 342.98703 * 25 23 22 27 27 Si 1.86806 * 119.99899 * 162.98989 * 25 23 22 28 28 H 1.48503 * 109.47163 * 179.97438 * 27 25 23 29 29 H 1.48491 * 109.47160 * 299.99930 * 27 25 23 30 30 H 1.48504 * 109.46671 * 59.99714 * 27 25 23 31 31 H 1.08998 * 109.46935 * 307.45292 * 1 2 3 32 32 H 1.09001 * 109.47602 * 67.45693 * 1 2 3 33 33 H 1.09002 * 109.46967 * 187.46143 * 1 2 3 34 34 H 1.09001 * 109.56720 * 66.55647 * 4 2 1 35 35 H 1.08998 * 109.33650 * 306.52341 * 4 2 1 36 36 H 1.09001 * 109.47288 * 68.84519 * 6 5 4 37 37 H 1.08998 * 109.47156 * 188.85350 * 6 5 4 38 38 H 0.96702 * 113.99759 * 300.00303 * 9 7 6 39 39 H 1.07996 * 120.00402 * 0.02562 * 11 10 7 40 40 H 1.08000 * 120.00040 * 179.70694 * 14 12 11 41 41 H 1.07996 * 119.99886 * 180.02562 * 15 14 12 42 42 H 1.09000 * 109.48674 * 176.93431 * 18 5 4 43 43 H 1.08998 * 109.49272 * 56.85485 * 18 5 4 44 44 H 1.08999 * 109.47360 * 300.96503 * 21 19 18 45 45 H 1.08996 * 109.47717 * 60.97118 * 21 19 18 46 46 H 1.09001 * 109.46915 * 180.96997 * 21 19 18 47 47 H 0.97006 * 119.99835 * 175.10484 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0414 -0.7248 -1.2440 5 7 3.5018 -0.8623 -1.1634 6 6 4.0495 -1.4021 -2.4150 7 6 3.2854 -2.6703 -2.8011 8 1 2.2184 -2.4521 -2.8458 9 8 3.5234 -3.6858 -1.8242 10 6 3.7571 -3.1500 -4.1495 11 6 4.7469 -4.1109 -4.2337 12 6 5.1767 -4.5550 -5.4724 13 9 6.1410 -5.4977 -5.5546 14 6 4.6227 -4.0287 -6.6271 15 6 3.6368 -3.0644 -6.5430 16 6 3.2028 -2.6242 -5.3039 17 9 2.2388 -1.6813 -5.2216 18 6 3.8965 -1.6900 -0.0157 19 6 3.4620 -0.9993 1.2813 20 1 4.0200 -0.0719 1.4104 21 6 3.7242 -1.9264 2.4699 22 7 2.0241 -0.7027 1.1938 23 6 1.1673 -1.0761 2.1946 24 1 1.1376 -2.1040 2.5245 25 6 0.3369 -0.1334 2.7849 26 7 0.5900 1.1500 2.6391 27 14 -1.1399 -0.6861 3.7865 28 1 -1.8590 0.5046 4.3065 29 1 -2.0532 -1.4794 2.9253 30 1 -0.6811 -1.5229 4.9243 31 1 -0.3633 0.6249 0.8158 32 1 -0.3634 0.3940 -0.9491 33 1 -0.3633 -1.0190 0.1335 34 1 1.7785 -0.1526 -2.1337 35 1 1.5854 -1.7133 -1.2988 36 1 3.9458 -0.6603 -3.2068 37 1 5.1040 -1.6412 -2.2769 38 1 4.4541 -3.9308 -1.7303 39 1 5.1821 -4.5182 -3.3331 40 1 4.9614 -4.3718 -7.5935 41 1 3.2045 -2.6542 -7.4436 42 1 4.9789 -1.8179 -0.0148 43 1 3.4147 -2.6651 -0.0877 44 1 3.1706 -2.8555 2.3351 45 1 4.7903 -2.1444 2.5325 46 1 3.3984 -1.4396 3.3892 47 1 -0.0284 1.8094 2.9908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878775488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:54 Heat of formation + Delta-G solvation = -75.548887 kcal Electronic energy + Delta-G solvation = -31194.795184 eV Core-core repulsion = 26821.636270 eV Total energy + Delta-G solvation = -4373.158914 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.28213 -49.20078 -40.02014 -38.57721 -36.85059 -34.46181 -32.77645 -32.09144 -31.27541 -30.51328 -28.36059 -27.27095 -25.78476 -25.24857 -23.89502 -23.13449 -22.13659 -20.96617 -20.17882 -19.01447 -18.44434 -17.65846 -17.60082 -16.51660 -16.17116 -16.00360 -15.65482 -15.45626 -15.00181 -14.89429 -14.70869 -14.53314 -14.37815 -14.24808 -14.06226 -13.52205 -13.32021 -12.91303 -12.78202 -12.45206 -12.37492 -12.03164 -11.84818 -11.53104 -11.49235 -11.34519 -11.24977 -11.04860 -10.75997 -10.58808 -10.53173 -10.43591 -10.30008 -10.08104 -9.75174 -9.65704 -9.51418 -9.34099 -8.91069 -8.07530 -7.61800 -6.26590 -5.61447 -3.47618 0.54844 0.60617 2.93917 3.37674 3.43762 3.46435 3.71253 3.81053 4.06194 4.16004 4.27624 4.44573 4.51387 4.56776 4.73654 4.96531 5.09319 5.25279 5.32517 5.40732 5.44197 5.52708 5.57494 5.64881 5.80142 5.89044 5.95073 6.01715 6.17269 6.31603 6.37422 6.37917 6.47389 6.52624 6.60321 6.69401 6.79740 6.90485 7.02449 7.23508 7.29772 7.39696 7.59137 7.62120 7.73902 7.81957 7.94237 8.70260 9.30811 9.82955 10.62705 11.26316 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.020215 B = 0.002999 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.800312 B = 9334.285889 C = 9959.874062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.200 3.800 3 H 0.034 0.966 4 C 0.037 3.963 5 N -0.522 5.522 6 C 0.032 3.968 7 C 0.108 3.892 8 H 0.121 0.879 9 O -0.538 6.538 10 C -0.113 4.113 11 C -0.121 4.121 12 C 0.093 3.907 13 F -0.135 7.135 14 C -0.131 4.131 15 C -0.121 4.121 16 C 0.097 3.903 17 F -0.128 7.128 18 C 0.035 3.965 19 C 0.172 3.828 20 H 0.027 0.973 21 C -0.129 4.129 22 N -0.577 5.577 23 C -0.257 4.257 24 H 0.050 0.950 25 C 0.034 3.966 26 N -0.876 5.876 27 Si 0.882 3.118 28 H -0.290 1.290 29 H -0.280 1.280 30 H -0.279 1.279 31 H 0.087 0.913 32 H 0.021 0.979 33 H 0.046 0.954 34 H 0.057 0.943 35 H 0.034 0.966 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.369 0.631 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.051 0.949 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.033 0.967 46 H 0.064 0.936 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.047 -8.805 -17.729 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.094 3.906 3 H 0.051 0.949 4 C -0.092 4.092 5 N -0.244 5.244 6 C -0.097 4.097 7 C 0.047 3.953 8 H 0.139 0.861 9 O -0.343 6.343 10 C -0.115 4.115 11 C -0.140 4.140 12 C 0.074 3.926 13 F -0.114 7.114 14 C -0.149 4.149 15 C -0.140 4.140 16 C 0.077 3.923 17 F -0.106 7.106 18 C -0.094 4.094 19 C 0.066 3.934 20 H 0.045 0.955 21 C -0.187 4.187 22 N -0.302 5.302 23 C -0.388 4.388 24 H 0.067 0.933 25 C -0.167 4.167 26 N -0.516 5.516 27 Si 0.710 3.290 28 H -0.216 1.216 29 H -0.206 1.206 30 H -0.205 1.205 31 H 0.105 0.895 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.218 0.782 39 H 0.162 0.838 40 H 0.163 0.837 41 H 0.165 0.835 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.083 0.917 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.553 -8.101 -17.416 21.026 hybrid contribution -0.553 -1.004 0.041 1.147 sum 7.999 -9.105 -17.375 21.185 Atomic orbital electron populations 1.21961 0.95848 1.02120 1.00032 1.20164 0.92711 0.93832 0.83894 0.94867 1.22858 0.86237 0.99616 1.00483 1.62215 1.12269 1.48686 1.01183 1.22925 0.98557 0.93667 0.94565 1.21836 1.02483 0.88733 0.82215 0.86116 1.86766 1.31066 1.57735 1.58734 1.20660 0.96925 0.97346 0.96545 1.20733 0.97839 0.98139 0.97274 1.17596 0.90120 0.90672 0.94215 1.91527 1.60623 1.62107 1.97116 1.20981 0.97738 0.97961 0.98258 1.21007 0.98009 0.98069 0.96931 1.17468 0.90161 0.90966 0.93658 1.91552 1.60339 1.61707 1.97037 1.22957 0.98189 0.96542 0.91747 1.20541 0.87320 0.94833 0.90740 0.95512 1.21684 0.97828 0.99624 0.99534 1.43960 1.00700 1.68088 1.17467 1.18621 1.16634 0.91560 1.11942 0.93286 1.25544 1.00121 0.95231 0.95846 1.70137 1.34721 0.99622 1.47077 0.86747 0.83757 0.77836 0.80667 1.21587 1.20591 1.20517 0.89451 0.96045 0.93469 0.92486 0.94751 0.90197 0.90764 0.78246 0.83787 0.83704 0.83509 0.93020 0.92131 0.93271 0.94802 0.91745 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 7.97 37.16 0.30 -2.97 16 2 C 0.20 4.67 3.11 -67.72 -0.21 4.45 16 3 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.04 0.72 3.96 -3.93 -0.02 0.70 16 5 N -0.52 -9.12 4.83 -234.60 -1.13 -10.26 16 6 C 0.03 0.43 5.22 -3.82 -0.02 0.41 16 7 C 0.11 1.37 2.53 -27.88 -0.07 1.30 16 8 H 0.12 1.80 5.80 -51.93 -0.30 1.50 16 9 O -0.54 -7.01 10.05 -35.23 -0.35 -7.36 16 10 C -0.11 -1.20 5.07 -104.56 -0.53 -1.73 16 11 C -0.12 -1.12 9.28 -39.52 -0.37 -1.49 16 12 C 0.09 0.84 7.30 -39.43 -0.29 0.55 16 13 F -0.14 -1.29 17.27 2.25 0.04 -1.26 16 14 C -0.13 -0.99 10.02 -39.52 -0.40 -1.38 16 15 C -0.12 -0.98 10.02 -39.52 -0.40 -1.38 16 16 C 0.10 1.02 7.24 -39.42 -0.29 0.73 16 17 F -0.13 -1.54 16.56 2.25 0.04 -1.50 16 18 C 0.03 0.62 4.28 -3.70 -0.02 0.60 16 19 C 0.17 3.74 3.66 -67.49 -0.25 3.49 16 20 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 21 C -0.13 -2.56 8.19 37.16 0.30 -2.25 16 22 N -0.58 -14.27 2.81 -157.27 -0.44 -14.72 16 23 C -0.26 -6.85 6.71 -15.06 -0.10 -6.95 16 24 H 0.05 1.34 7.19 -52.49 -0.38 0.96 16 25 C 0.03 0.93 3.46 -17.43 -0.06 0.87 16 26 N -0.88 -24.84 11.69 55.49 0.65 -24.19 16 27 Si 0.88 21.11 29.59 -169.99 -5.03 16.08 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 30 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 31 H 0.09 2.24 4.99 -51.93 -0.26 1.98 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 1.11 7.68 -51.93 -0.40 0.71 16 34 H 0.06 1.02 8.11 -51.93 -0.42 0.60 16 35 H 0.03 0.69 6.55 -51.93 -0.34 0.35 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 0.87 7.91 -51.93 -0.41 0.46 16 38 H 0.37 3.44 7.32 45.56 0.33 3.77 16 39 H 0.14 1.09 6.41 -52.49 -0.34 0.75 16 40 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.05 0.81 7.95 -51.93 -0.41 0.40 16 43 H 0.06 1.13 5.77 -51.93 -0.30 0.83 16 44 H 0.05 0.98 7.63 -51.93 -0.40 0.59 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.06 1.41 7.65 -51.93 -0.40 1.02 16 47 H 0.25 6.98 8.32 -40.82 -0.34 6.64 16 LS Contribution 368.26 15.07 5.55 5.55 Total: -1.00 -29.87 368.26 -9.20 -39.07 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.11 Total: 3.62 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -2.40 Total: -5.04 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.93 Total: -49.17 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.35 Total: -7.36 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.08 Total: -2.75 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.87 -9.20 -39.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878775488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.480 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds