Wall clock time and date at job start Tue Mar 31 2020 23:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.63418 * 2 1 4 4 C 1.53245 * 109.63022 * 239.60995 * 2 1 3 5 5 N 1.46905 * 109.33657 * 294.12437 * 4 2 1 6 6 C 1.46903 * 110.99351 * 172.74613 * 5 4 2 7 7 C 1.53001 * 109.46684 * 189.99775 * 6 5 4 8 8 H 1.08996 * 109.47314 * 305.00181 * 7 6 5 9 9 O 1.42903 * 109.47013 * 65.00111 * 7 6 5 10 10 C 1.50698 * 109.47180 * 185.00040 * 7 6 5 11 11 C 1.38210 * 119.99629 * 265.00073 * 10 7 6 12 12 C 1.38435 * 119.99745 * 179.97438 * 11 10 7 13 13 F 1.35093 * 119.99895 * 180.02562 * 12 11 10 14 14 C 1.38476 * 119.99834 * 359.97438 * 12 11 10 15 15 C 1.38163 * 120.00090 * 0.02562 * 14 12 11 16 16 C 1.38420 * 120.00194 * 84.72646 * 10 7 6 17 17 F 1.35098 * 119.99817 * 0.02562 * 16 10 7 18 18 C 1.46902 * 111.26807 * 296.89138 * 5 4 2 19 19 C 1.53238 * 109.33713 * 63.10988 * 18 5 4 20 20 H 1.08996 * 109.63155 * 66.07154 * 19 18 5 21 21 C 1.53003 * 109.62534 * 186.45882 * 19 18 5 22 22 N 1.47076 * 108.52193 * 306.16367 * 19 18 5 23 23 C 1.36933 * 120.88572 * 231.16573 * 22 19 18 24 24 H 1.07999 * 120.00149 * 127.74612 * 23 22 19 25 25 C 1.38816 * 119.99902 * 307.75353 * 23 22 19 26 26 N 1.31616 * 119.99971 * 156.43328 * 25 23 22 27 27 Si 1.86802 * 119.99699 * 336.42318 * 25 23 22 28 28 H 1.48499 * 109.46618 * 95.27682 * 27 25 23 29 29 H 1.48505 * 109.47029 * 215.27123 * 27 25 23 30 30 H 1.48499 * 109.47520 * 335.27557 * 27 25 23 31 31 H 1.08996 * 109.47462 * 180.38934 * 1 2 3 32 32 H 1.09002 * 109.46734 * 60.38922 * 1 2 3 33 33 H 1.08997 * 109.47150 * 300.39235 * 1 2 3 34 34 H 1.09001 * 109.48898 * 54.07910 * 4 2 1 35 35 H 1.08998 * 109.49171 * 174.13712 * 4 2 1 36 36 H 1.08999 * 109.47122 * 309.99490 * 6 5 4 37 37 H 1.08996 * 109.47189 * 70.00494 * 6 5 4 38 38 H 0.96695 * 114.00309 * 59.99520 * 9 7 6 39 39 H 1.07997 * 120.00241 * 359.97438 * 11 10 7 40 40 H 1.08000 * 119.99929 * 180.02562 * 14 12 11 41 41 H 1.07997 * 119.99885 * 180.02562 * 15 14 12 42 42 H 1.09001 * 109.48860 * 183.06977 * 18 5 4 43 43 H 1.09000 * 109.49370 * 303.14401 * 18 5 4 44 44 H 1.08998 * 109.47280 * 66.77178 * 21 19 18 45 45 H 1.09002 * 109.47021 * 186.77351 * 21 19 18 46 46 H 1.09001 * 109.47311 * 306.77230 * 21 19 18 47 47 H 0.97003 * 119.99576 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0448 -0.7302 -1.2451 5 7 1.6746 -2.1495 -1.1645 6 6 1.9978 -2.8496 -2.4149 7 6 1.3790 -4.2486 -2.3906 8 1 1.7118 -4.7777 -1.4977 9 8 -0.0458 -4.1391 -2.3760 10 6 1.8116 -5.0107 -3.6166 11 6 1.0037 -5.0322 -4.7377 12 6 1.4014 -5.7317 -5.8642 13 9 0.6119 -5.7523 -6.9602 14 6 2.6089 -6.4095 -5.8678 15 6 3.4166 -6.3879 -4.7470 16 6 3.0208 -5.6843 -3.6219 17 9 3.8129 -5.6591 -2.5277 18 6 2.3146 -2.8027 -0.0148 19 6 1.8109 -2.1575 1.2806 20 1 0.7487 -2.3677 1.4054 21 6 2.5895 -2.7200 2.4715 22 7 2.0240 -0.7049 1.1927 23 6 2.6650 -0.0266 2.1947 24 1 3.5025 0.6147 1.9629 25 6 2.2383 -0.1633 3.5086 26 7 3.0707 0.0775 4.4993 27 14 0.4826 -0.6886 3.8705 28 1 0.4394 -2.1577 4.0829 29 1 0.0012 0.0027 5.0935 30 1 -0.3885 -0.3284 2.7230 31 1 -0.3634 -1.0276 0.0070 32 1 -0.3633 0.5078 -0.8935 33 1 -0.3633 0.5199 0.8864 34 1 1.5992 -0.2881 -2.1362 35 1 3.1297 -0.6392 -1.2974 36 1 1.5963 -2.2893 -3.2592 37 1 3.0799 -2.9327 -2.5154 38 1 -0.4127 -3.6780 -3.1427 39 1 0.0621 -4.5032 -4.7350 40 1 2.9194 -6.9549 -6.7467 41 1 4.3585 -6.9162 -4.7500 42 1 2.0648 -3.8637 -0.0138 43 1 3.3958 -2.6834 -0.0842 44 1 3.6296 -2.4000 2.4094 45 1 2.1509 -2.3518 3.3990 46 1 2.5428 -3.8088 2.4546 47 1 2.7724 -0.0177 5.4174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878775489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:56 Heat of formation + Delta-G solvation = -72.575070 kcal Electronic energy + Delta-G solvation = -31065.049813 eV Core-core repulsion = 26692.019853 eV Total energy + Delta-G solvation = -4373.029960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.32791 -49.25678 -39.91864 -38.71515 -37.05797 -34.67454 -32.74540 -32.08230 -31.58436 -30.60174 -28.75582 -27.70191 -26.19271 -25.10061 -23.66839 -23.14403 -22.28898 -21.09152 -20.96559 -18.52466 -18.43371 -17.70911 -17.66249 -16.72839 -16.39377 -16.19718 -15.74186 -15.64148 -15.14765 -14.89641 -14.74128 -14.62493 -14.45627 -14.37129 -14.02265 -13.66178 -13.32783 -12.95827 -12.94116 -12.73599 -12.42554 -12.27603 -12.19266 -12.01447 -11.82714 -11.45398 -11.38653 -11.14364 -10.89949 -10.76115 -10.49418 -10.40970 -10.30442 -10.02596 -9.77965 -9.59460 -9.50245 -9.38175 -8.92392 -8.34210 -7.90996 -6.44907 -6.01297 -3.54316 0.48961 0.55187 2.87953 3.39198 3.51645 3.62373 3.63253 3.75540 3.92642 4.13885 4.21049 4.37681 4.56580 4.63105 4.69514 4.84209 4.97393 5.04912 5.20541 5.26727 5.40293 5.48328 5.52112 5.56013 5.60594 5.70118 5.76554 5.87715 5.93419 6.01160 6.11619 6.20907 6.30484 6.32145 6.44559 6.48023 6.56451 6.62220 6.76960 6.93952 7.08980 7.20011 7.37628 7.42415 7.50122 7.59363 8.13094 8.54450 9.07592 9.72029 10.29975 11.12318 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.002997 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.985711 B = 9341.616781 C = 9840.751616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.168 3.832 3 H 0.070 0.930 4 C 0.050 3.950 5 N -0.520 5.520 6 C 0.030 3.970 7 C 0.152 3.848 8 H 0.118 0.882 9 O -0.532 6.532 10 C -0.118 4.118 11 C -0.118 4.118 12 C 0.092 3.908 13 F -0.135 7.135 14 C -0.128 4.128 15 C -0.122 4.122 16 C 0.099 3.901 17 F -0.128 7.128 18 C 0.046 3.954 19 C 0.173 3.827 20 H 0.032 0.968 21 C -0.144 4.144 22 N -0.595 5.595 23 C -0.276 4.276 24 H 0.067 0.933 25 C 0.059 3.941 26 N -0.893 5.893 27 Si 0.864 3.136 28 H -0.282 1.282 29 H -0.303 1.303 30 H -0.257 1.257 31 H 0.057 0.943 32 H 0.035 0.965 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.030 0.970 36 H 0.076 0.924 37 H 0.039 0.961 38 H 0.369 0.631 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.062 0.938 43 H 0.033 0.967 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.032 0.968 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.903 -12.196 -21.298 24.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.062 3.938 3 H 0.089 0.911 4 C -0.079 4.079 5 N -0.244 5.244 6 C -0.098 4.098 7 C 0.092 3.908 8 H 0.135 0.865 9 O -0.337 6.337 10 C -0.120 4.120 11 C -0.137 4.137 12 C 0.073 3.927 13 F -0.113 7.113 14 C -0.147 4.147 15 C -0.141 4.141 16 C 0.079 3.921 17 F -0.106 7.106 18 C -0.083 4.083 19 C 0.067 3.933 20 H 0.050 0.950 21 C -0.202 4.202 22 N -0.319 5.319 23 C -0.404 4.404 24 H 0.085 0.915 25 C -0.144 4.144 26 N -0.532 5.532 27 Si 0.693 3.307 28 H -0.209 1.209 29 H -0.231 1.231 30 H -0.182 1.182 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.217 0.783 39 H 0.164 0.836 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.080 0.920 43 H 0.052 0.948 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.051 0.949 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.276 -12.490 -20.453 24.073 hybrid contribution -0.058 -0.047 -0.405 0.412 sum -2.334 -12.537 -20.858 24.448 Atomic orbital electron populations 1.22205 0.98116 1.01618 0.99498 1.20749 0.92183 0.94917 0.85988 0.91146 1.22615 0.97877 0.87759 0.99627 1.61851 1.58975 1.02375 1.01228 1.22721 0.98501 0.94114 0.94514 1.20828 0.81967 0.94099 0.93936 0.86456 1.86720 1.18209 1.80124 1.48646 1.20637 0.93815 0.99651 0.97853 1.20757 1.01248 1.00629 0.91059 1.17599 0.90484 1.00561 0.84051 1.91528 1.73191 1.95017 1.51586 1.21005 0.93247 1.00755 0.99692 1.21021 1.01396 1.00093 0.91578 1.17488 0.89882 1.00114 0.84599 1.91560 1.72582 1.94862 1.51606 1.22745 0.96317 0.97283 0.91941 1.20640 0.96426 0.84756 0.91489 0.94989 1.22031 1.02258 0.96946 0.98924 1.44422 1.66853 1.00985 1.19638 1.18470 1.10050 1.26714 0.85186 0.91513 1.25841 0.96772 0.95776 0.95989 1.69923 1.34352 1.49711 0.99178 0.87269 0.88267 0.77750 0.77444 1.20860 1.23105 1.18174 0.92391 0.94623 0.93233 0.91896 0.95202 0.90598 0.94269 0.78296 0.83581 0.83647 0.83458 0.91965 0.94831 0.91368 0.91359 0.94859 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.08 37.16 0.34 -2.62 16 2 C 0.17 3.37 3.31 -67.49 -0.22 3.14 16 3 H 0.07 1.44 7.96 -51.93 -0.41 1.02 16 4 C 0.05 0.84 5.01 -3.69 -0.02 0.82 16 5 N -0.52 -8.39 4.08 -234.31 -0.96 -9.34 16 6 C 0.03 0.38 4.58 -3.82 -0.02 0.37 16 7 C 0.15 1.78 2.94 -27.88 -0.08 1.70 16 8 H 0.12 1.57 5.85 -51.93 -0.30 1.27 16 9 O -0.53 -6.39 12.94 -35.23 -0.46 -6.85 16 10 C -0.12 -1.17 5.07 -104.57 -0.53 -1.70 16 11 C -0.12 -1.00 9.28 -39.52 -0.37 -1.37 16 12 C 0.09 0.77 7.30 -39.42 -0.29 0.48 16 13 F -0.13 -1.21 17.27 2.25 0.04 -1.17 16 14 C -0.13 -0.90 10.02 -39.52 -0.40 -1.30 16 15 C -0.12 -0.93 10.02 -39.52 -0.40 -1.33 16 16 C 0.10 0.98 7.24 -39.43 -0.29 0.70 16 17 F -0.13 -1.49 16.57 2.25 0.04 -1.45 16 18 C 0.05 0.84 4.76 -3.70 -0.02 0.82 16 19 C 0.17 3.75 2.06 -67.49 -0.14 3.61 16 20 H 0.03 0.74 6.92 -51.93 -0.36 0.38 16 21 C -0.14 -3.22 7.83 37.16 0.29 -2.93 16 22 N -0.59 -13.89 1.97 -157.00 -0.31 -14.20 16 23 C -0.28 -7.51 8.72 -15.06 -0.13 -7.64 16 24 H 0.07 2.00 8.06 -52.49 -0.42 1.58 16 25 C 0.06 1.65 3.86 -17.43 -0.07 1.58 16 26 N -0.89 -26.46 13.97 55.49 0.78 -25.68 16 27 Si 0.86 22.00 24.77 -169.99 -4.21 17.79 16 28 H -0.28 -7.04 6.45 56.52 0.36 -6.67 16 29 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 30 H -0.26 -6.46 5.59 56.52 0.32 -6.14 16 31 H 0.06 1.15 7.07 -51.93 -0.37 0.78 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 1.04 6.78 -51.93 -0.35 0.69 16 34 H 0.06 0.91 7.99 -51.93 -0.41 0.49 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.83 7.97 -51.93 -0.41 0.42 16 37 H 0.04 0.52 8.12 -51.93 -0.42 0.10 16 38 H 0.37 3.06 7.32 45.56 0.33 3.39 16 39 H 0.15 0.97 6.41 -52.49 -0.34 0.63 16 40 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.06 1.04 6.07 -51.93 -0.32 0.72 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 1.62 7.69 -51.93 -0.40 1.22 16 45 H 0.07 1.69 3.33 -51.93 -0.17 1.52 16 46 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 366.33 15.07 5.52 5.52 Total: -1.00 -30.66 366.33 -8.04 -38.71 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.15 Total: 2.34 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.33 Total: -5.66 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.49 Total: -49.23 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.46 Total: -6.85 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.08 Total: -2.62 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.21 Total: 17.79 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.66 -8.04 -38.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878775489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.869 kcal (2) G-P(sol) polarization free energy of solvation -30.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds