Wall clock time and date at job start Tue Mar 31 2020 23:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.78425 * 2 1 4 4 C 1.53237 * 109.62871 * 239.51076 * 2 1 3 5 5 N 1.46903 * 109.33605 * 186.45962 * 4 2 1 6 6 C 1.46904 * 110.99682 * 187.25646 * 5 4 2 7 7 C 1.52995 * 109.47145 * 51.28284 * 6 5 4 8 8 H 1.09002 * 109.47293 * 298.89254 * 7 6 5 9 9 O 1.42902 * 109.47396 * 58.89176 * 7 6 5 10 10 C 1.50699 * 109.47153 * 178.89362 * 7 6 5 11 11 C 1.38415 * 120.02635 * 104.99640 * 10 7 6 12 12 F 1.35101 * 120.01516 * 0.02562 * 11 10 7 13 13 C 1.38474 * 119.97591 * 180.02562 * 11 10 7 14 14 C 1.38210 * 120.02628 * 0.02562 * 13 11 10 15 15 C 1.38211 * 120.04717 * 0.24808 * 14 13 11 16 16 C 1.38423 * 120.02499 * 285.02266 * 10 7 6 17 17 F 1.35102 * 120.01054 * 359.97438 * 16 10 7 18 18 C 1.46904 * 111.26805 * 63.10898 * 5 4 2 19 19 C 1.53236 * 109.33852 * 296.89500 * 18 5 4 20 20 H 1.09006 * 109.62640 * 293.92031 * 19 18 5 21 21 C 1.52998 * 109.62759 * 173.54252 * 19 18 5 22 22 N 1.47071 * 108.52357 * 53.82762 * 19 18 5 23 23 C 1.36939 * 120.88098 * 128.79739 * 22 19 18 24 24 H 1.08005 * 119.99821 * 307.03425 * 23 22 19 25 25 C 1.38811 * 120.00387 * 127.03550 * 23 22 19 26 26 N 1.31610 * 119.99963 * 342.27085 * 25 23 22 27 27 Si 1.86804 * 120.00013 * 162.26989 * 25 23 22 28 28 H 1.48500 * 109.47162 * 59.99949 * 27 25 23 29 29 H 1.48501 * 109.47045 * 179.97438 * 27 25 23 30 30 H 1.48505 * 109.47035 * 300.00021 * 27 25 23 31 31 H 1.08999 * 109.47558 * 307.42307 * 1 2 3 32 32 H 1.09003 * 109.47149 * 67.42207 * 1 2 3 33 33 H 1.08997 * 109.47295 * 187.41747 * 1 2 3 34 34 H 1.08999 * 109.49286 * 66.50677 * 4 2 1 35 35 H 1.09001 * 109.49631 * 306.42208 * 4 2 1 36 36 H 1.09000 * 109.47280 * 291.28191 * 6 5 4 37 37 H 1.09001 * 109.46993 * 171.28296 * 6 5 4 38 38 H 0.96697 * 113.99585 * 59.99979 * 9 7 6 39 39 H 1.08006 * 119.99113 * 179.97438 * 13 11 10 40 40 H 1.07996 * 119.97798 * 179.97438 * 14 13 11 41 41 H 1.08002 * 119.98633 * 179.72123 * 15 14 13 42 42 H 1.09006 * 109.49093 * 56.85091 * 18 5 4 43 43 H 1.08997 * 109.48842 * 176.92778 * 18 5 4 44 44 H 1.09003 * 109.47260 * 59.99312 * 21 19 18 45 45 H 1.08995 * 109.47398 * 179.97438 * 21 19 18 46 46 H 1.09004 * 109.47156 * 299.99532 * 21 19 18 47 47 H 0.96999 * 120.00367 * 185.04398 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0447 -0.7323 -1.2437 5 7 3.5055 -0.8644 -1.1607 6 6 4.0569 -1.4062 -2.4099 7 6 3.5346 -0.5902 -3.5941 8 1 2.4478 -0.6628 -3.6342 9 8 3.9150 0.7780 -3.4345 10 6 4.1217 -1.1289 -4.8732 11 6 3.3409 -1.8878 -5.7279 12 9 2.0519 -2.1456 -5.4160 13 6 3.8816 -2.3828 -6.9027 14 6 5.2003 -2.1198 -7.2218 15 6 5.9824 -1.3669 -6.3664 16 6 5.4422 -0.8657 -5.1941 17 9 6.2054 -0.1251 -4.3608 18 6 3.9015 -1.6871 -0.0099 19 6 3.4628 -0.9940 1.2844 20 1 4.0201 -0.0656 1.4096 21 6 3.7266 -1.9164 2.4762 22 7 2.0240 -0.7028 1.1939 23 6 1.1670 -1.0764 2.1944 24 1 1.1491 -2.1011 2.5355 25 6 0.3212 -0.1384 2.7703 26 7 0.5662 1.1464 2.6235 27 14 -1.1646 -0.6996 3.7536 28 1 -0.7148 -1.5289 4.9004 29 1 -1.9001 0.4871 4.2599 30 1 -2.0599 -1.5030 2.8827 31 1 -0.3634 0.6245 0.8161 32 1 -0.3633 0.3946 -0.9489 33 1 -0.3634 -1.0190 0.1327 34 1 1.7811 -0.1639 -2.1357 35 1 1.5923 -1.7226 -1.2961 36 1 3.7499 -2.4461 -2.5217 37 1 5.1450 -1.3496 -2.3814 38 1 4.8708 0.9179 -3.3910 39 1 3.2727 -2.9753 -7.5696 40 1 5.6213 -2.5065 -8.1381 41 1 7.0141 -1.1657 -6.6146 42 1 3.4232 -2.6641 -0.0795 43 1 4.9844 -1.8112 -0.0071 44 1 4.7911 -2.1444 2.5306 45 1 3.4140 -1.4209 3.3953 46 1 3.1629 -2.8410 2.3518 47 1 0.0188 1.8004 3.0856 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878776385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:05 Heat of formation + Delta-G solvation = -73.290278 kcal Electronic energy + Delta-G solvation = -31262.783938 eV Core-core repulsion = 26889.722964 eV Total energy + Delta-G solvation = -4373.060974 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.48308 -49.29928 -39.59322 -38.52265 -36.90716 -34.48807 -32.70883 -32.05429 -31.18726 -30.68962 -28.36295 -27.27792 -25.80131 -25.10731 -23.77584 -23.22594 -22.17263 -20.88661 -20.06362 -19.02591 -18.55774 -17.77372 -17.21503 -16.37588 -16.14342 -15.94651 -15.82597 -15.53254 -15.34104 -14.85518 -14.77566 -14.74976 -14.31895 -14.16103 -13.71022 -13.29671 -13.15710 -13.12251 -12.73429 -12.61124 -12.29777 -12.28438 -11.88156 -11.70966 -11.44892 -11.30645 -11.21641 -10.81230 -10.68961 -10.61114 -10.43910 -10.38426 -10.08843 -10.05899 -9.71947 -9.63637 -9.40117 -9.16038 -9.13164 -8.07783 -7.72984 -6.19873 -5.68181 -3.42904 0.54767 0.57211 2.93476 3.36798 3.43041 3.45310 3.48824 3.94185 4.01314 4.23334 4.32545 4.47501 4.49623 4.70885 4.77769 4.98016 5.15393 5.32348 5.35418 5.39564 5.42975 5.52628 5.56140 5.67779 5.72662 5.86858 5.96610 6.04838 6.17207 6.24216 6.30939 6.34279 6.47410 6.50233 6.56409 6.67773 6.83888 6.95289 7.06811 7.21659 7.29227 7.57390 7.64469 7.73107 7.78144 7.84320 7.99463 8.70523 9.30841 9.83932 10.63753 11.27573 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.020309 B = 0.003040 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.345370 B = 9207.047811 C = 9745.026639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.203 3.797 3 H 0.038 0.962 4 C 0.038 3.962 5 N -0.520 5.520 6 C 0.030 3.970 7 C 0.149 3.851 8 H 0.118 0.882 9 O -0.536 6.536 10 C -0.184 4.184 11 C 0.140 3.860 12 F -0.125 7.125 13 C -0.163 4.163 14 C -0.064 4.064 15 C -0.162 4.162 16 C 0.137 3.863 17 F -0.124 7.124 18 C 0.049 3.951 19 C 0.174 3.826 20 H 0.032 0.968 21 C -0.129 4.129 22 N -0.579 5.579 23 C -0.263 4.263 24 H 0.050 0.950 25 C 0.036 3.964 26 N -0.877 5.877 27 Si 0.885 3.115 28 H -0.280 1.280 29 H -0.289 1.289 30 H -0.279 1.279 31 H 0.091 0.909 32 H 0.020 0.980 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.023 0.977 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.373 0.627 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.026 0.974 43 H 0.058 0.942 44 H 0.034 0.966 45 H 0.065 0.935 46 H 0.047 0.953 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.623 -6.633 -19.692 23.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.097 3.903 3 H 0.055 0.945 4 C -0.091 4.091 5 N -0.244 5.244 6 C -0.099 4.099 7 C 0.089 3.911 8 H 0.136 0.864 9 O -0.343 6.343 10 C -0.187 4.187 11 C 0.120 3.880 12 F -0.103 7.103 13 C -0.182 4.182 14 C -0.082 4.082 15 C -0.181 4.181 16 C 0.117 3.883 17 F -0.103 7.103 18 C -0.081 4.081 19 C 0.067 3.933 20 H 0.050 0.950 21 C -0.187 4.187 22 N -0.304 5.304 23 C -0.393 4.393 24 H 0.067 0.933 25 C -0.165 4.165 26 N -0.517 5.517 27 Si 0.713 3.287 28 H -0.206 1.206 29 H -0.215 1.215 30 H -0.205 1.205 31 H 0.109 0.891 32 H 0.039 0.961 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.224 0.776 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.044 0.956 43 H 0.076 0.924 44 H 0.053 0.947 45 H 0.084 0.916 46 H 0.066 0.934 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.032 -5.881 -19.535 22.734 hybrid contribution -0.589 -1.144 0.488 1.376 sum 9.444 -7.025 -19.048 22.391 Atomic orbital electron populations 1.21997 0.95882 1.02004 1.00256 1.20249 0.92637 0.93915 0.83515 0.94470 1.22975 0.85990 0.99111 1.01041 1.61906 1.12062 1.49674 1.00723 1.22737 1.00102 0.96165 0.90901 1.20811 1.00273 0.82653 0.87394 0.86442 1.86661 1.29322 1.22815 1.95495 1.20836 0.93890 1.03160 1.00776 1.17188 0.79117 0.97555 0.94139 1.91557 1.33992 1.91916 1.92853 1.21248 0.96988 1.03270 0.96648 1.20863 0.92472 0.95828 0.99064 1.21218 1.01931 1.01078 0.93855 1.17170 0.87768 0.93802 0.89555 1.91415 1.74598 1.73956 1.70320 1.22724 0.98378 0.94506 0.92455 1.20505 0.87544 0.95017 0.90231 0.95032 1.21691 0.97872 0.99591 0.99548 1.44029 1.00520 1.68245 1.17617 1.18601 1.14952 0.92173 1.13562 0.93301 1.25575 0.99599 0.95285 0.96086 1.70022 1.38943 0.99956 1.42807 0.86695 0.83761 0.77882 0.80354 1.20580 1.21525 1.20518 0.89097 0.96051 0.93681 0.91708 0.95901 0.94739 0.90838 0.77612 0.83807 0.83787 0.83802 0.95618 0.92389 0.94720 0.91598 0.93367 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 7.96 37.16 0.30 -3.12 16 2 C 0.20 4.92 3.13 -67.49 -0.21 4.71 16 3 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 4 C 0.04 0.78 4.50 -3.70 -0.02 0.76 16 5 N -0.52 -9.84 4.59 -234.32 -1.07 -10.92 16 6 C 0.03 0.46 4.74 -3.82 -0.02 0.44 16 7 C 0.15 2.16 2.43 -27.89 -0.07 2.09 16 8 H 0.12 1.85 5.36 -51.93 -0.28 1.57 16 9 O -0.54 -8.51 13.08 -35.23 -0.46 -8.97 16 10 C -0.18 -2.19 4.98 -104.49 -0.52 -2.71 16 11 C 0.14 1.53 7.24 -39.43 -0.29 1.24 16 12 F -0.12 -1.55 16.27 2.25 0.04 -1.51 16 13 C -0.16 -1.27 10.02 -39.50 -0.40 -1.66 16 14 C -0.06 -0.40 10.04 -39.60 -0.40 -0.80 16 15 C -0.16 -1.21 10.02 -39.51 -0.40 -1.60 16 16 C 0.14 1.40 6.98 -39.43 -0.28 1.13 16 17 F -0.12 -1.35 14.02 2.25 0.03 -1.31 16 18 C 0.05 0.93 4.91 -3.70 -0.02 0.91 16 19 C 0.17 3.87 3.66 -67.50 -0.25 3.62 16 20 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.13 -2.60 8.19 37.16 0.30 -2.30 16 22 N -0.58 -14.67 2.81 -157.01 -0.44 -15.11 16 23 C -0.26 -7.08 6.78 -15.06 -0.10 -7.18 16 24 H 0.05 1.34 7.14 -52.48 -0.37 0.96 16 25 C 0.04 0.99 3.42 -17.43 -0.06 0.93 16 26 N -0.88 -25.16 11.63 55.49 0.65 -24.51 16 27 Si 0.88 21.24 29.59 -169.99 -5.03 16.21 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 31 H 0.09 2.40 4.91 -51.93 -0.26 2.14 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.04 1.08 7.69 -51.93 -0.40 0.68 16 34 H 0.06 1.27 5.78 -51.93 -0.30 0.97 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.03 0.53 8.13 -51.93 -0.42 0.10 16 37 H 0.07 1.05 7.61 -51.93 -0.40 0.66 16 38 H 0.37 5.12 6.35 45.56 0.29 5.41 16 39 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 1.45 7.69 -51.93 -0.40 1.05 16 46 H 0.05 0.97 7.56 -51.93 -0.39 0.58 16 47 H 0.26 7.12 8.32 -40.82 -0.34 6.78 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -30.34 370.00 -9.42 -39.76 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.29 Total: 4.32 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -2.41 Total: -3.52 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.87 Total: -50.55 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.46 Total: -8.97 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.07 Total: -2.83 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.34 -9.42 -39.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878776385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.530 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds