Wall clock time and date at job start Tue Mar 31 2020 23:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.78425 * 2 1 4 4 C 1.53237 * 109.62871 * 239.51076 * 2 1 3 5 5 N 1.46903 * 109.33605 * 186.45962 * 4 2 1 6 6 C 1.46904 * 110.99682 * 187.25646 * 5 4 2 7 7 C 1.52995 * 109.47145 * 51.28284 * 6 5 4 8 8 H 1.09002 * 109.47293 * 298.89254 * 7 6 5 9 9 O 1.42902 * 109.47396 * 58.89176 * 7 6 5 10 10 C 1.50699 * 109.47153 * 178.89362 * 7 6 5 11 11 C 1.38415 * 120.02635 * 104.99640 * 10 7 6 12 12 F 1.35101 * 120.01516 * 0.02562 * 11 10 7 13 13 C 1.38474 * 119.97591 * 180.02562 * 11 10 7 14 14 C 1.38210 * 120.02628 * 0.02562 * 13 11 10 15 15 C 1.38211 * 120.04717 * 0.24808 * 14 13 11 16 16 C 1.38423 * 120.02499 * 285.02266 * 10 7 6 17 17 F 1.35102 * 120.01054 * 359.97438 * 16 10 7 18 18 C 1.46904 * 111.26805 * 63.10898 * 5 4 2 19 19 C 1.53236 * 109.33852 * 296.89500 * 18 5 4 20 20 H 1.09006 * 109.62640 * 293.92031 * 19 18 5 21 21 C 1.52998 * 109.62759 * 173.54252 * 19 18 5 22 22 N 1.47071 * 108.52357 * 53.82762 * 19 18 5 23 23 C 1.36939 * 120.88098 * 128.79739 * 22 19 18 24 24 H 1.08005 * 119.99821 * 307.03425 * 23 22 19 25 25 C 1.38811 * 120.00387 * 127.03550 * 23 22 19 26 26 N 1.31610 * 119.99963 * 342.27085 * 25 23 22 27 27 Si 1.86804 * 120.00013 * 162.26989 * 25 23 22 28 28 H 1.48500 * 109.47162 * 59.99949 * 27 25 23 29 29 H 1.48501 * 109.47045 * 179.97438 * 27 25 23 30 30 H 1.48505 * 109.47035 * 300.00021 * 27 25 23 31 31 H 1.08999 * 109.47558 * 307.42307 * 1 2 3 32 32 H 1.09003 * 109.47149 * 67.42207 * 1 2 3 33 33 H 1.08997 * 109.47295 * 187.41747 * 1 2 3 34 34 H 1.08999 * 109.49286 * 66.50677 * 4 2 1 35 35 H 1.09001 * 109.49631 * 306.42208 * 4 2 1 36 36 H 1.09000 * 109.47280 * 291.28191 * 6 5 4 37 37 H 1.09001 * 109.46993 * 171.28296 * 6 5 4 38 38 H 0.96697 * 113.99585 * 59.99979 * 9 7 6 39 39 H 1.08006 * 119.99113 * 179.97438 * 13 11 10 40 40 H 1.07996 * 119.97798 * 179.97438 * 14 13 11 41 41 H 1.08002 * 119.98633 * 179.72123 * 15 14 13 42 42 H 1.09006 * 109.49093 * 56.85091 * 18 5 4 43 43 H 1.08997 * 109.48842 * 176.92778 * 18 5 4 44 44 H 1.09003 * 109.47260 * 59.99312 * 21 19 18 45 45 H 1.08995 * 109.47398 * 179.97438 * 21 19 18 46 46 H 1.09004 * 109.47156 * 299.99532 * 21 19 18 47 47 H 0.96999 * 120.00367 * 185.04398 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0447 -0.7323 -1.2437 5 7 3.5055 -0.8644 -1.1607 6 6 4.0569 -1.4062 -2.4099 7 6 3.5346 -0.5902 -3.5941 8 1 2.4478 -0.6628 -3.6342 9 8 3.9150 0.7780 -3.4345 10 6 4.1217 -1.1289 -4.8732 11 6 3.3409 -1.8878 -5.7279 12 9 2.0519 -2.1456 -5.4160 13 6 3.8816 -2.3828 -6.9027 14 6 5.2003 -2.1198 -7.2218 15 6 5.9824 -1.3669 -6.3664 16 6 5.4422 -0.8657 -5.1941 17 9 6.2054 -0.1251 -4.3608 18 6 3.9015 -1.6871 -0.0099 19 6 3.4628 -0.9940 1.2844 20 1 4.0201 -0.0656 1.4096 21 6 3.7266 -1.9164 2.4762 22 7 2.0240 -0.7028 1.1939 23 6 1.1670 -1.0764 2.1944 24 1 1.1491 -2.1011 2.5355 25 6 0.3212 -0.1384 2.7703 26 7 0.5662 1.1464 2.6235 27 14 -1.1646 -0.6996 3.7536 28 1 -0.7148 -1.5289 4.9004 29 1 -1.9001 0.4871 4.2599 30 1 -2.0599 -1.5030 2.8827 31 1 -0.3634 0.6245 0.8161 32 1 -0.3633 0.3946 -0.9489 33 1 -0.3634 -1.0190 0.1327 34 1 1.7811 -0.1639 -2.1357 35 1 1.5923 -1.7226 -1.2961 36 1 3.7499 -2.4461 -2.5217 37 1 5.1450 -1.3496 -2.3814 38 1 4.8708 0.9179 -3.3910 39 1 3.2727 -2.9753 -7.5696 40 1 5.6213 -2.5065 -8.1381 41 1 7.0141 -1.1657 -6.6146 42 1 3.4232 -2.6641 -0.0795 43 1 4.9844 -1.8112 -0.0071 44 1 4.7911 -2.1444 2.5306 45 1 3.4140 -1.4209 3.3953 46 1 3.1629 -2.8410 2.3518 47 1 0.0188 1.8004 3.0856 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878776385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:04 Heat of formation + Delta-G solvation = -93.248422 kcal Electronic energy + Delta-G solvation = -31263.649388 eV Core-core repulsion = 26889.722964 eV Total energy + Delta-G solvation = -4373.926424 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.23765 -50.12792 -40.66051 -39.78676 -38.18944 -36.16504 -34.48119 -33.37039 -32.74330 -31.32460 -29.86923 -28.89108 -27.52553 -26.74164 -25.20894 -23.92574 -23.26572 -22.42935 -21.72833 -20.89166 -19.31099 -18.60693 -18.26293 -17.99266 -17.21049 -17.09624 -16.76023 -16.69025 -16.40551 -16.22742 -16.14910 -16.02409 -15.82189 -15.52190 -15.03142 -14.96460 -14.69268 -14.50500 -13.84555 -13.69172 -13.43625 -13.31881 -13.27113 -13.05040 -12.98194 -12.86372 -12.73145 -12.61027 -12.44065 -12.31978 -12.21381 -12.03385 -11.92038 -11.56006 -11.51436 -11.31892 -11.05587 -10.15954 -9.98639 -9.81205 -9.26470 -8.28214 -7.73801 -5.55807 -0.13081 -0.07831 1.43810 1.46636 1.52276 2.29743 2.47764 2.76263 2.80946 3.25187 3.27436 3.33350 3.47129 3.55676 3.61414 3.76705 3.95698 4.02296 4.19467 4.21822 4.26763 4.41273 4.48358 4.56259 4.62394 4.67068 4.69707 4.73888 4.81134 4.83477 4.86109 4.92899 4.95137 5.00160 5.02539 5.04761 5.16892 5.23661 5.46072 5.52836 5.67984 5.71864 5.74385 5.83948 6.16435 6.18465 6.59022 6.61971 7.25531 7.82785 8.58161 9.17695 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.020309 B = 0.003040 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.345370 B = 9207.047811 C = 9745.026639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.202 3.798 3 H -0.003 1.003 4 C 0.057 3.943 5 N -0.533 5.533 6 C 0.037 3.963 7 C 0.153 3.847 8 H 0.098 0.902 9 O -0.556 6.556 10 C -0.205 4.205 11 C 0.114 3.886 12 F -0.142 7.142 13 C -0.155 4.155 14 C -0.047 4.047 15 C -0.152 4.152 16 C 0.120 3.880 17 F -0.133 7.133 18 C 0.060 3.940 19 C 0.164 3.836 20 H 0.005 0.995 21 C -0.117 4.117 22 N -0.595 5.595 23 C -0.266 4.266 24 H 0.046 0.954 25 C -0.004 4.004 26 N -0.911 5.911 27 Si 0.942 3.058 28 H -0.273 1.273 29 H -0.292 1.292 30 H -0.274 1.274 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.071 0.929 35 H 0.019 0.981 36 H 0.040 0.960 37 H 0.088 0.912 38 H 0.380 0.620 39 H 0.168 0.832 40 H 0.188 0.812 41 H 0.172 0.828 42 H 0.024 0.976 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.039 0.961 46 H 0.046 0.954 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.294 -8.734 -22.255 26.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.096 3.904 3 H 0.015 0.985 4 C -0.073 4.073 5 N -0.257 5.257 6 C -0.091 4.091 7 C 0.093 3.907 8 H 0.116 0.884 9 O -0.365 6.365 10 C -0.207 4.207 11 C 0.095 3.905 12 F -0.121 7.121 13 C -0.174 4.174 14 C -0.064 4.064 15 C -0.171 4.171 16 C 0.101 3.899 17 F -0.111 7.111 18 C -0.069 4.069 19 C 0.058 3.942 20 H 0.023 0.977 21 C -0.175 4.175 22 N -0.320 5.320 23 C -0.396 4.396 24 H 0.064 0.936 25 C -0.203 4.203 26 N -0.553 5.553 27 Si 0.769 3.231 28 H -0.198 1.198 29 H -0.218 1.218 30 H -0.200 1.200 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.037 0.963 36 H 0.058 0.942 37 H 0.106 0.894 38 H 0.232 0.768 39 H 0.186 0.814 40 H 0.205 0.795 41 H 0.190 0.810 42 H 0.042 0.958 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.724 -8.005 -22.108 26.274 hybrid contribution -1.006 -0.482 1.187 1.629 sum 10.717 -8.487 -20.921 24.991 Atomic orbital electron populations 1.21856 0.95816 1.01091 1.00506 1.20143 0.92839 0.92317 0.85127 0.98525 1.22611 0.87307 0.98230 0.99113 1.61834 1.10834 1.50612 1.02435 1.22745 1.00653 0.96331 0.89371 1.20602 0.99338 0.81997 0.88774 0.88441 1.86621 1.30142 1.23983 1.95745 1.20579 0.95019 1.05005 1.00113 1.17543 0.78638 0.98805 0.95540 1.91510 1.35176 1.92203 1.93175 1.21616 0.97969 1.02392 0.95399 1.21401 0.91372 0.93868 0.99789 1.21621 1.03319 0.99757 0.92371 1.17418 0.87289 0.94562 0.90675 1.91387 1.74600 1.74322 1.70815 1.22545 0.99940 0.93616 0.90825 1.20683 0.85665 0.94769 0.93109 0.97685 1.21563 1.00238 0.98471 0.97215 1.44297 1.01795 1.68144 1.17762 1.18757 1.15264 0.92007 1.13608 0.93644 1.26139 1.01745 0.95152 0.97220 1.70154 1.40039 1.00977 1.44104 0.85784 0.80775 0.77311 0.79255 1.19827 1.21823 1.20012 0.91587 0.93764 0.94178 0.91049 0.96305 0.94220 0.89369 0.76791 0.81406 0.79478 0.81026 0.95769 0.89478 0.90974 0.94200 0.93454 0.93845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.61 7.96 71.98 0.57 -6.03 16 2 C 0.20 10.15 3.13 44.96 0.14 10.29 16 3 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 4 C 0.06 2.38 4.50 86.38 0.39 2.77 16 5 N -0.53 -20.19 4.59 -895.24 -4.11 -24.30 16 6 C 0.04 1.12 4.74 86.30 0.41 1.53 16 7 C 0.15 4.46 2.43 29.85 0.07 4.53 16 8 H 0.10 3.18 5.36 -2.39 -0.01 3.17 16 9 O -0.56 -18.00 13.08 -148.98 -1.95 -19.95 16 10 C -0.20 -4.69 4.98 -19.78 -0.10 -4.79 16 11 C 0.11 2.36 7.24 22.37 0.16 2.52 16 12 F -0.14 -3.52 16.27 44.97 0.73 -2.79 16 13 C -0.16 -1.90 10.02 22.32 0.22 -1.68 16 14 C -0.05 -0.36 10.04 22.26 0.22 -0.13 16 15 C -0.15 -1.68 10.02 22.32 0.22 -1.45 16 16 C 0.12 2.24 6.98 22.37 0.16 2.40 16 17 F -0.13 -2.70 14.02 44.97 0.63 -2.07 16 18 C 0.06 2.24 4.91 86.38 0.42 2.66 16 19 C 0.16 7.39 3.66 44.96 0.16 7.56 16 20 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 21 C -0.12 -4.67 8.19 71.98 0.59 -4.08 16 22 N -0.59 -30.96 2.81 -650.66 -1.83 -32.80 16 23 C -0.27 -14.63 6.78 84.03 0.57 -14.06 16 24 H 0.05 2.52 7.14 -2.91 -0.02 2.50 16 25 C 0.00 -0.20 3.42 84.86 0.29 0.09 16 26 N -0.91 -54.17 11.63 21.65 0.25 -53.92 16 27 Si 0.94 44.39 29.59 68.60 2.03 46.42 16 28 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 29 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 30 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 31 H 0.07 3.60 4.91 -2.39 -0.01 3.59 16 32 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.04 1.95 7.69 -2.39 -0.02 1.93 16 34 H 0.07 2.88 5.78 -2.39 -0.01 2.87 16 35 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.04 1.17 8.13 -2.39 -0.02 1.15 16 37 H 0.09 2.39 7.61 -2.39 -0.02 2.37 16 38 H 0.38 10.57 6.35 -74.06 -0.47 10.09 16 39 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 40 H 0.19 -0.12 8.06 -2.91 -0.02 -0.14 16 41 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.09 2.76 8.11 -2.39 -0.02 2.74 16 44 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.04 1.77 7.69 -2.39 -0.02 1.75 16 46 H 0.05 1.87 7.56 -2.39 -0.02 1.85 16 47 H 0.25 14.56 8.32 -92.71 -0.77 13.79 16 Total: -1.00 -69.24 370.00 0.79 -68.45 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.52 Total: 18.84 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 4.51 Total: 2.11 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -5.68 Total: -111.01 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -1.95 Total: -19.95 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 1.36 Total: -4.86 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -69.24 0.79 -68.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878776385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.800 kcal (2) G-P(sol) polarization free energy of solvation -69.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds