Wall clock time and date at job start Tue Mar 31 2020 23:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34220 * 116.99997 * 2 1 4 4 O 1.20834 * 120.00006 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00069 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.32656 * 54.20661 * 5 3 2 7 7 C 1.54471 * 110.37531 * 291.83744 * 5 3 2 8 8 C 1.54508 * 104.06147 * 217.18990 * 7 5 3 9 9 C 1.54478 * 104.06628 * 359.97438 * 8 7 5 10 10 H 1.08997 * 110.46342 * 265.10426 * 9 8 7 11 11 C 1.50701 * 110.37095 * 142.81086 * 9 8 7 12 12 O 1.21280 * 119.99516 * 248.16199 * 11 9 8 13 13 N 1.34771 * 119.99807 * 68.16779 * 11 9 8 14 14 C 1.46971 * 120.59328 * 179.97438 * 13 11 9 15 15 C 1.53366 * 108.63555 * 235.20912 * 14 13 11 16 16 H 1.08999 * 109.61417 * 70.31994 * 15 14 13 17 17 C 1.53009 * 109.60927 * 190.83032 * 15 14 13 18 18 N 1.46963 * 108.63447 * 310.57161 * 15 14 13 19 19 C 1.36942 * 120.59719 * 235.20550 * 18 15 14 20 20 H 1.08002 * 119.99441 * 29.16959 * 19 18 15 21 21 C 1.38807 * 120.00148 * 209.17479 * 19 18 15 22 22 N 1.31620 * 119.99926 * 16.98849 * 21 19 18 23 23 Si 1.86801 * 120.00068 * 196.99398 * 21 19 18 24 24 H 1.48503 * 109.47265 * 180.02562 * 23 21 19 25 25 H 1.48508 * 109.46832 * 299.99845 * 23 21 19 26 26 H 1.48495 * 109.47334 * 59.99536 * 23 21 19 27 27 C 1.46968 * 118.81057 * 55.48290 * 18 15 14 28 28 H 1.08998 * 109.60795 * 184.77505 * 27 18 15 29 29 C 1.52996 * 109.60857 * 64.26501 * 27 18 15 30 30 C 1.46963 * 120.59808 * 359.97438 * 13 11 9 31 31 O 1.44427 * 110.37065 * 176.45273 * 5 3 2 32 32 H 1.09002 * 109.47128 * 59.99983 * 1 2 3 33 33 H 1.08998 * 109.47148 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47479 * 299.99596 * 1 2 3 35 35 H 1.08999 * 110.51045 * 335.83190 * 7 5 3 36 36 H 1.08999 * 110.51336 * 98.54056 * 7 5 3 37 37 H 1.09007 * 110.50878 * 241.35150 * 8 7 5 38 38 H 1.09004 * 110.51362 * 118.65096 * 8 7 5 39 39 H 1.08994 * 109.60907 * 115.46036 * 14 13 11 40 40 H 1.09007 * 109.60693 * 354.94858 * 14 13 11 41 41 H 1.08995 * 109.46962 * 179.14522 * 17 15 14 42 42 H 1.08998 * 109.47066 * 299.14250 * 17 15 14 43 43 H 1.09003 * 109.46664 * 59.14284 * 17 15 14 44 44 H 0.97003 * 120.00030 * 180.02562 * 22 21 19 45 45 H 1.08998 * 109.47381 * 60.00400 * 29 27 18 46 46 H 1.09002 * 109.46767 * 179.97438 * 29 27 18 47 47 H 1.08996 * 109.47494 * 299.99587 * 29 27 18 48 48 H 1.08999 * 109.60763 * 244.53986 * 30 13 11 49 49 H 1.08995 * 109.60734 * 5.04260 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9761 0.6975 -0.8282 7 6 4.1311 0.7653 1.3451 8 6 5.3340 1.6943 1.6231 9 6 5.3541 2.6548 0.4134 10 1 6.0400 2.2902 -0.3512 11 6 5.7475 4.0420 0.8515 12 8 4.9357 4.9423 0.8155 13 7 7.0015 4.2820 1.2830 14 6 7.3995 5.6300 1.7128 15 6 8.6307 6.0584 0.9049 16 1 8.3430 6.2435 -0.1300 17 6 9.2256 7.3309 1.5116 18 7 9.6246 4.9770 0.9547 19 6 10.8988 5.2209 1.3931 20 1 11.0808 6.0034 2.1150 21 6 11.9562 4.4627 0.9098 22 7 11.8092 3.7535 -0.1892 23 14 13.5878 4.4486 1.8192 24 1 14.5460 3.5683 1.1034 25 1 14.1334 5.8286 1.8783 26 1 13.3815 3.9385 3.1984 27 6 9.2283 3.6303 0.5196 28 1 10.0469 2.9328 0.6973 29 6 8.8828 3.6530 -0.9707 30 6 7.9955 3.2007 1.3324 31 8 3.9977 2.6506 -0.0833 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 3.3846 0.8607 2.1336 36 1 4.4608 -0.2695 1.2533 37 1 6.2585 1.1187 1.6688 38 1 5.1822 2.2489 2.5492 39 1 7.6447 5.6179 2.7747 40 1 6.5820 6.3280 1.5315 41 1 10.1092 7.6247 0.9450 42 1 8.4868 8.1313 1.4735 43 1 9.5047 7.1429 2.5484 44 1 12.5481 3.2233 -0.5268 45 1 9.7539 3.9760 -1.5407 46 1 8.5897 2.6532 -1.2910 47 1 8.0590 4.3459 -1.1422 48 1 8.2833 3.0153 2.3672 49 1 7.5717 2.2943 0.9001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880452478.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:19 Heat of formation + Delta-G solvation = -120.956970 kcal Electronic energy + Delta-G solvation = -31693.716318 eV Core-core repulsion = 27429.675877 eV Total energy + Delta-G solvation = -4264.040441 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.06884 -40.15018 -38.72869 -37.16882 -36.59026 -34.20255 -32.92578 -32.40338 -31.20699 -30.72001 -28.17989 -27.87640 -26.43157 -25.80496 -24.46759 -23.45617 -22.16191 -21.19558 -20.99608 -19.81822 -18.71100 -18.02956 -17.39866 -17.05232 -16.70749 -16.20299 -15.95159 -15.60419 -15.39851 -14.89360 -14.47225 -14.36687 -14.13287 -14.02652 -13.61736 -13.48200 -13.42679 -13.10472 -12.80820 -12.62916 -12.30251 -12.02129 -11.95958 -11.91110 -11.69686 -11.45613 -11.22675 -11.15997 -11.10071 -11.05329 -10.80868 -10.69488 -10.64947 -10.60889 -10.20608 -10.17734 -10.14353 -9.82330 -9.61152 -9.24900 -8.56018 -8.21735 -6.69475 -5.86914 -3.30881 1.90641 2.06720 2.86292 3.15427 3.32659 3.39091 3.40406 3.87636 4.13271 4.34722 4.41880 4.50065 4.64858 4.76321 4.79330 4.82551 4.87542 5.03921 5.15585 5.19763 5.27780 5.29961 5.44054 5.56089 5.65158 5.69096 5.75764 5.86918 6.00348 6.02013 6.04819 6.13104 6.22493 6.32945 6.35179 6.41570 6.56050 6.69425 6.79647 6.88464 6.98177 7.09445 7.44824 7.49551 7.58239 7.74514 7.86074 8.35883 8.51494 9.12567 9.74149 10.31516 11.20273 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022890 B = 0.002767 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.948980 B =10116.195987 C =10775.385460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.464 3.536 4 O -0.479 6.479 5 C 0.081 3.919 6 H 0.113 0.887 7 C -0.137 4.137 8 C -0.143 4.143 9 C 0.058 3.942 10 H 0.103 0.897 11 C 0.516 3.484 12 O -0.534 6.534 13 N -0.590 5.590 14 C 0.103 3.897 15 C 0.154 3.846 16 H 0.032 0.968 17 C -0.135 4.135 18 N -0.580 5.580 19 C -0.251 4.251 20 H 0.071 0.929 21 C 0.004 3.996 22 N -0.899 5.899 23 Si 0.901 3.099 24 H -0.292 1.292 25 H -0.284 1.284 26 H -0.285 1.285 27 C 0.178 3.822 28 H 0.108 0.892 29 C -0.145 4.145 30 C 0.081 3.919 31 O -0.317 6.317 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.055 0.945 44 H 0.254 0.746 45 H 0.078 0.922 46 H 0.027 0.973 47 H 0.024 0.976 48 H 0.066 0.934 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.350 -10.649 2.215 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.275 6.275 3 C 0.305 3.695 4 O -0.363 6.363 5 C 0.022 3.978 6 H 0.131 0.869 7 C -0.175 4.175 8 C -0.181 4.181 9 C -0.003 4.003 10 H 0.121 0.879 11 C 0.302 3.698 12 O -0.411 6.411 13 N -0.323 5.323 14 C -0.021 4.021 15 C 0.047 3.953 16 H 0.050 0.950 17 C -0.193 4.193 18 N -0.303 5.303 19 C -0.381 4.381 20 H 0.089 0.911 21 C -0.194 4.194 22 N -0.543 5.543 23 Si 0.731 3.269 24 H -0.217 1.217 25 H -0.210 1.210 26 H -0.211 1.211 27 C 0.071 3.929 28 H 0.126 0.874 29 C -0.204 4.204 30 C -0.043 4.043 31 O -0.235 6.235 32 H 0.083 0.917 33 H 0.122 0.878 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.097 0.903 46 H 0.046 0.954 47 H 0.044 0.956 48 H 0.085 0.915 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.005 -9.747 2.041 18.009 hybrid contribution 0.840 -0.243 0.322 0.931 sum -14.166 -9.990 2.363 17.494 Atomic orbital electron populations 1.23303 0.75832 1.03801 1.02815 1.86460 1.23693 1.32808 1.84499 1.23213 0.91157 0.81750 0.73415 1.90739 1.66485 1.36207 1.42865 1.22420 0.88026 0.86677 1.00687 0.86942 1.22882 0.98087 1.00949 0.95566 1.23018 0.99389 0.96936 0.98799 1.22973 0.85389 0.95155 0.96746 0.87916 1.19893 0.82332 0.89168 0.78369 1.90699 1.50261 1.45727 1.54393 1.47899 1.09513 1.11397 1.63480 1.22287 0.98479 0.82595 0.98750 1.20804 0.88985 0.89486 0.96041 0.95023 1.21751 1.00486 0.95693 1.01338 1.44163 1.07971 1.02464 1.75720 1.19145 0.82699 1.18361 1.17872 0.91100 1.25051 0.97439 1.01137 0.95800 1.69980 1.31661 1.33004 1.19681 0.86402 0.83633 0.77583 0.79301 1.21746 1.20984 1.21113 1.20828 0.92710 0.88787 0.90595 0.87390 1.22048 1.01089 0.97910 0.99305 1.22866 0.91271 0.88410 1.01723 1.89394 1.27237 1.22221 1.84623 0.91723 0.87815 0.91769 0.89942 0.88310 0.88336 0.89579 0.91801 0.90079 0.91585 0.93985 0.92569 0.93589 0.90287 0.95402 0.95649 0.91535 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.51 10.56 -39.23 -0.41 -3.92 16 3 C 0.46 5.86 7.20 36.01 0.26 6.12 16 4 O -0.48 -7.99 16.30 -25.29 -0.41 -8.40 16 5 C 0.08 0.92 3.82 -27.11 -0.10 0.82 16 6 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 7 C -0.14 -1.20 6.62 -25.17 -0.17 -1.37 16 8 C -0.14 -1.50 5.69 -25.16 -0.14 -1.64 16 9 C 0.06 0.82 2.74 -27.11 -0.07 0.75 16 10 H 0.10 1.29 7.44 -51.93 -0.39 0.90 16 11 C 0.52 9.34 6.99 -10.99 -0.08 9.26 16 12 O -0.53 -11.80 15.96 -13.65 -0.22 -12.02 16 13 N -0.59 -10.34 2.59 -172.24 -0.45 -10.78 16 14 C 0.10 1.88 5.91 -3.60 -0.02 1.86 16 15 C 0.15 3.10 3.23 -67.48 -0.22 2.88 16 16 H 0.03 0.70 7.38 -51.93 -0.38 0.32 16 17 C -0.13 -2.44 7.94 37.16 0.30 -2.15 16 18 N -0.58 -12.98 2.68 -156.78 -0.42 -13.40 16 19 C -0.25 -6.18 8.57 -15.06 -0.13 -6.31 16 20 H 0.07 1.72 6.23 -52.49 -0.33 1.40 16 21 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 22 N -0.90 -23.44 10.15 55.49 0.56 -22.87 16 23 Si 0.90 20.24 29.59 -169.99 -5.03 15.21 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 C 0.18 3.66 2.36 -67.27 -0.16 3.50 16 28 H 0.11 2.50 6.03 -51.93 -0.31 2.18 16 29 C -0.14 -2.93 8.95 37.16 0.33 -2.60 16 30 C 0.08 1.33 5.40 -3.38 -0.02 1.32 16 31 O -0.32 -5.10 10.17 -64.23 -0.65 -5.75 16 32 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 35 H 0.08 0.74 7.86 -51.93 -0.41 0.33 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.81 7.00 -51.93 -0.36 0.44 16 38 H 0.09 0.98 7.87 -51.93 -0.41 0.57 16 39 H 0.06 1.13 8.12 -51.93 -0.42 0.71 16 40 H 0.08 1.51 6.99 -51.93 -0.36 1.15 16 41 H 0.07 1.29 7.67 -51.93 -0.40 0.89 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 1.00 7.38 -51.93 -0.38 0.62 16 44 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 45 H 0.08 1.86 7.18 -51.93 -0.37 1.49 16 46 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.02 0.51 7.00 -51.93 -0.36 0.15 16 48 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.07 0.93 4.50 -51.93 -0.23 0.70 16 LS Contribution 382.31 15.07 5.76 5.76 Total: -1.00 -32.77 382.31 -8.15 -40.93 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.64 Total: 1.47 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: 0.76 Total: 13.78 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.30 Total: -47.06 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -1.70 Total: -30.09 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.77 -8.15 -40.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880452478.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.030 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds