Wall clock time and date at job start Tue Mar 31 2020 23:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34220 * 116.99997 * 2 1 4 4 O 1.20834 * 120.00006 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00069 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.32656 * 54.20661 * 5 3 2 7 7 C 1.54471 * 110.37531 * 291.83744 * 5 3 2 8 8 C 1.54508 * 104.06147 * 217.18990 * 7 5 3 9 9 C 1.54478 * 104.06628 * 359.97438 * 8 7 5 10 10 H 1.08997 * 110.46342 * 265.10426 * 9 8 7 11 11 C 1.50701 * 110.37095 * 142.81086 * 9 8 7 12 12 O 1.21280 * 119.99516 * 248.16199 * 11 9 8 13 13 N 1.34771 * 119.99807 * 68.16779 * 11 9 8 14 14 C 1.46971 * 120.59328 * 179.97438 * 13 11 9 15 15 C 1.53366 * 108.63555 * 235.20912 * 14 13 11 16 16 H 1.08999 * 109.61417 * 70.31994 * 15 14 13 17 17 C 1.53009 * 109.60927 * 190.83032 * 15 14 13 18 18 N 1.46963 * 108.63447 * 310.57161 * 15 14 13 19 19 C 1.36942 * 120.59719 * 235.20550 * 18 15 14 20 20 H 1.08002 * 119.99441 * 29.16959 * 19 18 15 21 21 C 1.38807 * 120.00148 * 209.17479 * 19 18 15 22 22 N 1.31620 * 119.99926 * 16.98849 * 21 19 18 23 23 Si 1.86801 * 120.00068 * 196.99398 * 21 19 18 24 24 H 1.48503 * 109.47265 * 180.02562 * 23 21 19 25 25 H 1.48508 * 109.46832 * 299.99845 * 23 21 19 26 26 H 1.48495 * 109.47334 * 59.99536 * 23 21 19 27 27 C 1.46968 * 118.81057 * 55.48290 * 18 15 14 28 28 H 1.08998 * 109.60795 * 184.77505 * 27 18 15 29 29 C 1.52996 * 109.60857 * 64.26501 * 27 18 15 30 30 C 1.46963 * 120.59808 * 359.97438 * 13 11 9 31 31 O 1.44427 * 110.37065 * 176.45273 * 5 3 2 32 32 H 1.09002 * 109.47128 * 59.99983 * 1 2 3 33 33 H 1.08998 * 109.47148 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47479 * 299.99596 * 1 2 3 35 35 H 1.08999 * 110.51045 * 335.83190 * 7 5 3 36 36 H 1.08999 * 110.51336 * 98.54056 * 7 5 3 37 37 H 1.09007 * 110.50878 * 241.35150 * 8 7 5 38 38 H 1.09004 * 110.51362 * 118.65096 * 8 7 5 39 39 H 1.08994 * 109.60907 * 115.46036 * 14 13 11 40 40 H 1.09007 * 109.60693 * 354.94858 * 14 13 11 41 41 H 1.08995 * 109.46962 * 179.14522 * 17 15 14 42 42 H 1.08998 * 109.47066 * 299.14250 * 17 15 14 43 43 H 1.09003 * 109.46664 * 59.14284 * 17 15 14 44 44 H 0.97003 * 120.00030 * 180.02562 * 22 21 19 45 45 H 1.08998 * 109.47381 * 60.00400 * 29 27 18 46 46 H 1.09002 * 109.46767 * 179.97438 * 29 27 18 47 47 H 1.08996 * 109.47494 * 299.99587 * 29 27 18 48 48 H 1.08999 * 109.60763 * 244.53986 * 30 13 11 49 49 H 1.08995 * 109.60734 * 5.04260 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9761 0.6975 -0.8282 7 6 4.1311 0.7653 1.3451 8 6 5.3340 1.6943 1.6231 9 6 5.3541 2.6548 0.4134 10 1 6.0400 2.2902 -0.3512 11 6 5.7475 4.0420 0.8515 12 8 4.9357 4.9423 0.8155 13 7 7.0015 4.2820 1.2830 14 6 7.3995 5.6300 1.7128 15 6 8.6307 6.0584 0.9049 16 1 8.3430 6.2435 -0.1300 17 6 9.2256 7.3309 1.5116 18 7 9.6246 4.9770 0.9547 19 6 10.8988 5.2209 1.3931 20 1 11.0808 6.0034 2.1150 21 6 11.9562 4.4627 0.9098 22 7 11.8092 3.7535 -0.1892 23 14 13.5878 4.4486 1.8192 24 1 14.5460 3.5683 1.1034 25 1 14.1334 5.8286 1.8783 26 1 13.3815 3.9385 3.1984 27 6 9.2283 3.6303 0.5196 28 1 10.0469 2.9328 0.6973 29 6 8.8828 3.6530 -0.9707 30 6 7.9955 3.2007 1.3324 31 8 3.9977 2.6506 -0.0833 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 3.3846 0.8607 2.1336 36 1 4.4608 -0.2695 1.2533 37 1 6.2585 1.1187 1.6688 38 1 5.1822 2.2489 2.5492 39 1 7.6447 5.6179 2.7747 40 1 6.5820 6.3280 1.5315 41 1 10.1092 7.6247 0.9450 42 1 8.4868 8.1313 1.4735 43 1 9.5047 7.1429 2.5484 44 1 12.5481 3.2233 -0.5268 45 1 9.7539 3.9760 -1.5407 46 1 8.5897 2.6532 -1.2910 47 1 8.0590 4.3459 -1.1422 48 1 8.2833 3.0153 2.3672 49 1 7.5717 2.2943 0.9001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880452478.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:18 Heat of formation + Delta-G solvation = -140.824358 kcal Electronic energy + Delta-G solvation = -31694.577833 eV Core-core repulsion = 27429.675877 eV Total energy + Delta-G solvation = -4264.901956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.06536 -41.34395 -39.90931 -38.68940 -37.54003 -35.77677 -34.52542 -33.33903 -32.92309 -31.74435 -29.73143 -28.83050 -27.75317 -27.19195 -25.88344 -24.86939 -23.06867 -22.61926 -22.00738 -21.25781 -20.20138 -19.14724 -18.42268 -17.96176 -17.81690 -17.65052 -17.16393 -16.99993 -16.75267 -16.23816 -15.83358 -15.75070 -15.39856 -15.31301 -14.94308 -14.76621 -14.47177 -14.35275 -14.23463 -13.70894 -13.50213 -13.41977 -13.04864 -12.94664 -12.90491 -12.79939 -12.75892 -12.66213 -12.42643 -12.36694 -12.25512 -11.99529 -11.93606 -11.88222 -11.75532 -11.61955 -11.49528 -11.28547 -11.16277 -10.66236 -10.39701 -9.74850 -8.48722 -7.76053 -5.21563 0.98170 1.22106 1.51335 1.54904 1.56455 1.61199 1.92033 2.58269 2.89499 3.22610 3.38042 3.45134 3.54190 3.68719 3.76904 3.92097 3.97209 4.14311 4.20408 4.28372 4.29310 4.31218 4.34122 4.48093 4.50174 4.61002 4.64397 4.69245 4.71923 4.82108 4.84633 4.86428 4.91037 4.94716 4.97578 5.10425 5.19634 5.21738 5.33313 5.35317 5.48074 5.57180 5.76032 5.81535 5.92561 6.45312 6.50291 6.60871 7.12187 7.26683 7.93035 8.47007 9.28096 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022890 B = 0.002767 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.948980 B =10116.195987 C =10775.385460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.348 6.348 3 C 0.466 3.534 4 O -0.532 6.532 5 C 0.073 3.927 6 H 0.149 0.851 7 C -0.126 4.126 8 C -0.138 4.138 9 C 0.058 3.942 10 H 0.125 0.875 11 C 0.511 3.489 12 O -0.583 6.583 13 N -0.589 5.589 14 C 0.110 3.890 15 C 0.153 3.847 16 H 0.006 0.994 17 C -0.127 4.127 18 N -0.593 5.593 19 C -0.253 4.253 20 H 0.071 0.929 21 C -0.040 4.040 22 N -0.920 5.920 23 Si 0.956 3.044 24 H -0.299 1.299 25 H -0.286 1.286 26 H -0.279 1.279 27 C 0.174 3.826 28 H 0.085 0.915 29 C -0.131 4.131 30 C 0.093 3.907 31 O -0.361 6.361 32 H 0.059 0.941 33 H 0.142 0.858 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.141 0.859 37 H 0.132 0.868 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.248 0.752 45 H 0.039 0.961 46 H 0.058 0.942 47 H 0.015 0.985 48 H 0.077 0.923 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.714 -13.376 3.265 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C 0.309 3.691 4 O -0.421 6.421 5 C 0.014 3.986 6 H 0.166 0.834 7 C -0.163 4.163 8 C -0.176 4.176 9 C -0.002 4.002 10 H 0.142 0.858 11 C 0.299 3.701 12 O -0.464 6.464 13 N -0.321 5.321 14 C -0.014 4.014 15 C 0.046 3.954 16 H 0.024 0.976 17 C -0.184 4.184 18 N -0.317 5.317 19 C -0.383 4.383 20 H 0.089 0.911 21 C -0.236 4.236 22 N -0.566 5.566 23 Si 0.786 3.214 24 H -0.226 1.226 25 H -0.213 1.213 26 H -0.205 1.205 27 C 0.067 3.933 28 H 0.103 0.897 29 C -0.190 4.190 30 C -0.030 4.030 31 O -0.280 6.280 32 H 0.078 0.922 33 H 0.160 0.840 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.159 0.841 37 H 0.150 0.850 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.077 0.923 47 H 0.035 0.965 48 H 0.095 0.905 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.369 -12.515 3.108 20.062 hybrid contribution 0.871 0.627 -0.058 1.075 sum -14.499 -11.888 3.050 18.995 Atomic orbital electron populations 1.23625 0.74349 1.06156 1.02432 1.86462 1.25117 1.31137 1.83663 1.23662 0.91901 0.81663 0.71846 1.90720 1.67695 1.38014 1.45628 1.22854 0.87123 0.85073 1.03517 0.83419 1.22935 0.97017 1.02636 0.93727 1.23085 1.01722 0.96435 0.96371 1.23085 0.85305 0.92948 0.98875 0.85759 1.20704 0.81667 0.90592 0.77136 1.90671 1.51591 1.47745 1.56353 1.47954 1.09812 1.11253 1.63064 1.22089 0.97103 0.83387 0.98843 1.20851 0.89433 0.89958 0.95182 0.97584 1.21665 1.00283 0.95611 1.00885 1.44405 1.07746 1.03819 1.75694 1.19372 0.83762 1.17836 1.17303 0.91146 1.25615 0.99822 1.01659 0.96540 1.70125 1.31893 1.33844 1.20716 0.85532 0.80580 0.76956 0.78352 1.22557 1.21286 1.20530 1.20844 0.93786 0.87542 0.91150 0.89687 1.21874 0.98884 0.99232 0.98979 1.22782 0.89251 0.89133 1.01833 1.89357 1.28147 1.25445 1.85078 0.92224 0.84014 0.92194 0.90427 0.84054 0.85019 0.90832 0.90774 0.90770 0.93491 0.91486 0.92156 0.94296 0.94167 0.92334 0.96550 0.90508 0.87242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.35 -6.03 10.56 -51.32 -0.54 -6.58 16 3 C 0.47 11.20 7.20 71.24 0.51 11.71 16 4 O -0.53 -18.03 16.30 28.18 0.46 -17.57 16 5 C 0.07 1.45 3.82 30.35 0.12 1.56 16 6 H 0.15 1.86 8.14 -2.39 -0.02 1.84 16 7 C -0.13 -1.70 6.62 31.61 0.21 -1.49 16 8 C -0.14 -2.36 5.69 31.61 0.18 -2.18 16 9 C 0.06 1.50 2.74 30.35 0.08 1.59 16 10 H 0.13 2.64 7.44 -2.39 -0.02 2.62 16 11 C 0.51 18.03 6.99 87.66 0.61 18.64 16 12 O -0.58 -26.22 15.96 15.33 0.24 -25.97 16 13 N -0.59 -19.87 2.59 -817.23 -2.12 -21.99 16 14 C 0.11 3.97 5.91 86.41 0.51 4.48 16 15 C 0.15 6.17 3.23 45.03 0.15 6.31 16 16 H 0.01 0.29 7.38 -2.39 -0.02 0.27 16 17 C -0.13 -4.57 7.94 71.99 0.57 -3.99 16 18 N -0.59 -26.50 2.68 -649.94 -1.74 -28.24 16 19 C -0.25 -12.40 8.57 84.03 0.72 -11.68 16 20 H 0.07 3.41 6.23 -2.91 -0.02 3.39 16 21 C -0.04 -2.03 4.91 84.86 0.42 -1.61 16 22 N -0.92 -48.47 10.15 21.65 0.22 -48.25 16 23 Si 0.96 41.65 29.59 68.60 2.03 43.68 16 24 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 25 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 27 C 0.17 6.96 2.36 45.16 0.11 7.07 16 28 H 0.09 3.87 6.03 -2.39 -0.01 3.86 16 29 C -0.13 -5.23 8.95 71.98 0.64 -4.59 16 30 C 0.09 2.81 5.40 86.55 0.47 3.28 16 31 O -0.36 -11.23 10.17 -121.26 -1.23 -12.46 16 32 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 33 H 0.14 0.66 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.81 8.13 -2.39 -0.02 0.80 16 35 H 0.08 1.15 7.86 -2.39 -0.02 1.13 16 36 H 0.14 0.75 8.14 -2.39 -0.02 0.74 16 37 H 0.13 1.37 7.00 -2.38 -0.02 1.35 16 38 H 0.07 1.47 7.87 -2.38 -0.02 1.45 16 39 H 0.07 2.53 8.12 -2.39 -0.02 2.51 16 40 H 0.07 2.79 6.99 -2.38 -0.02 2.78 16 41 H 0.05 1.85 7.67 -2.39 -0.02 1.83 16 42 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 43 H 0.06 2.11 7.38 -2.39 -0.02 2.09 16 44 H 0.25 12.91 8.31 -92.71 -0.77 12.14 16 45 H 0.04 1.91 7.18 -2.39 -0.02 1.89 16 46 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 47 H 0.02 0.65 7.00 -2.39 -0.02 0.63 16 48 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.11 2.43 4.50 -2.39 -0.01 2.42 16 Total: -1.00 -75.66 382.31 4.76 -70.90 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.96 Total: 15.83 kcal Atomic # 6 Polarization: 24.16 SS G_CDS: 6.49 Total: 30.65 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -3.64 Total: -98.48 kcal Atomic # 8 Polarization: -61.51 SS G_CDS: -1.07 Total: -62.58 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -75.66 4.76 -70.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880452478.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.924 kcal (2) G-P(sol) polarization free energy of solvation -75.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds