Wall clock time and date at job start Tue Mar 31 2020 23:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 117.00209 * 2 1 4 4 O 1.20819 * 119.99821 * 0.27628 * 3 2 1 5 5 C 1.50700 * 119.99589 * 179.97438 * 3 2 1 6 6 H 1.08998 * 110.33453 * 57.25700 * 5 3 2 7 7 C 1.54472 * 110.37793 * 294.99951 * 5 3 2 8 8 C 1.54503 * 104.06513 * 217.19354 * 7 5 3 9 9 C 1.54479 * 104.06412 * 359.97438 * 8 7 5 10 10 H 1.08992 * 110.37050 * 265.14647 * 9 8 7 11 11 C 1.50698 * 110.37120 * 142.81067 * 9 8 7 12 12 O 1.21284 * 119.99665 * 245.00225 * 11 9 8 13 13 N 1.34777 * 120.00050 * 64.99900 * 11 9 8 14 14 C 1.46965 * 120.59270 * 179.97438 * 13 11 9 15 15 C 1.53376 * 108.63579 * 235.20723 * 14 13 11 16 16 H 1.08995 * 109.60789 * 70.32281 * 15 14 13 17 17 C 1.53000 * 109.60672 * 190.83203 * 15 14 13 18 18 N 1.46963 * 108.63302 * 310.57345 * 15 14 13 19 19 C 1.36927 * 120.59827 * 235.24800 * 18 15 14 20 20 H 1.08002 * 120.00137 * 54.29813 * 19 18 15 21 21 C 1.38810 * 120.00316 * 234.30661 * 19 18 15 22 22 N 1.31619 * 119.99901 * 20.00446 * 21 19 18 23 23 Si 1.86800 * 120.00212 * 200.01322 * 21 19 18 24 24 H 1.48507 * 109.47362 * 89.99562 * 23 21 19 25 25 H 1.48497 * 109.47314 * 209.99545 * 23 21 19 26 26 H 1.48503 * 109.47062 * 329.99526 * 23 21 19 27 27 C 1.46967 * 118.80962 * 55.23205 * 18 15 14 28 28 H 1.08995 * 109.61350 * 64.68274 * 27 18 15 29 29 C 1.52992 * 109.61127 * 185.02631 * 27 18 15 30 30 C 1.46965 * 120.59453 * 359.72168 * 13 11 9 31 31 O 1.44420 * 104.80186 * 23.98111 * 9 8 7 32 32 H 1.09005 * 109.46562 * 300.00144 * 1 2 3 33 33 H 1.08995 * 109.47142 * 59.99782 * 1 2 3 34 34 H 1.08997 * 109.47470 * 179.97438 * 1 2 3 35 35 H 1.09004 * 110.51312 * 335.83938 * 7 5 3 36 36 H 1.09002 * 110.50904 * 98.54466 * 7 5 3 37 37 H 1.09005 * 110.51199 * 118.64557 * 8 7 5 38 38 H 1.09005 * 110.51249 * 241.35116 * 8 7 5 39 39 H 1.09003 * 109.61277 * 354.95096 * 14 13 11 40 40 H 1.08995 * 109.61036 * 115.46065 * 14 13 11 41 41 H 1.09000 * 109.47343 * 60.00144 * 17 15 14 42 42 H 1.09000 * 109.46719 * 179.97438 * 17 15 14 43 43 H 1.09000 * 109.47172 * 299.99585 * 17 15 14 44 44 H 0.97005 * 119.99732 * 182.19989 * 22 21 19 45 45 H 1.09000 * 109.47365 * 51.96586 * 29 27 18 46 46 H 1.09000 * 109.47638 * 171.96638 * 29 27 18 47 47 H 1.09000 * 109.47277 * 291.96325 * 29 27 18 48 48 H 1.08997 * 109.60882 * 244.53719 * 30 13 11 49 49 H 1.09002 * 109.60801 * 5.05363 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 0.0050 5 6 3.5664 1.2747 0.0006 6 1 3.9739 0.7422 -0.8588 7 6 4.1350 0.6919 1.3133 8 6 5.3388 1.6041 1.6387 9 6 5.3555 2.6298 0.4837 10 1 6.0389 2.3062 -0.3012 11 6 5.7504 3.9908 0.9964 12 8 4.9561 4.9066 0.9593 13 7 6.9861 4.1902 1.4962 14 6 7.3851 5.5122 1.9992 15 6 8.6606 5.9500 1.2685 16 1 8.4258 6.1819 0.2297 17 6 9.2466 7.1858 1.9543 18 7 9.6330 4.8493 1.3207 19 6 10.8881 5.0516 1.8293 20 1 11.0094 5.4660 2.8192 21 6 12.0048 4.7244 1.0724 22 7 11.9011 4.6003 -0.2338 23 14 13.6546 4.4599 1.9076 24 1 13.7966 3.0298 2.2816 25 1 14.7473 4.8388 0.9763 26 1 13.7314 5.3009 3.1292 27 6 9.2340 3.5273 0.8177 28 1 9.0429 3.5860 -0.2538 29 6 10.3514 2.5173 1.0854 30 6 7.9568 3.0882 1.5530 31 8 3.9982 2.6526 -0.0092 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3634 -1.0276 -0.0005 35 1 3.3908 0.7436 2.1081 36 1 4.4644 -0.3363 1.1636 37 1 5.1897 2.1069 2.5943 38 1 6.2634 1.0269 1.6499 39 1 6.5890 6.2318 1.8084 40 1 7.5790 5.4529 3.0701 41 1 9.4867 6.9469 2.9904 42 1 10.1530 7.4947 1.4337 43 1 8.5179 7.9960 1.9277 44 1 12.6740 4.3404 -0.7592 45 1 10.6346 2.5590 2.1372 46 1 10.0003 1.5142 0.8433 47 1 11.2156 2.7588 0.4666 48 1 8.1905 2.8599 2.5928 49 1 7.5382 2.2066 1.0674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880452480.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:25 Heat of formation + Delta-G solvation = -120.158176 kcal Electronic energy + Delta-G solvation = -31530.868136 eV Core-core repulsion = 27266.862333 eV Total energy + Delta-G solvation = -4264.005803 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.08507 -40.14372 -38.69531 -37.17574 -36.60994 -34.30552 -33.18754 -32.40466 -31.29012 -30.73712 -28.15246 -27.74095 -26.31579 -25.76988 -24.66551 -23.48851 -22.14585 -21.18743 -20.43721 -19.90184 -19.03032 -18.01267 -17.39038 -17.09177 -16.75385 -16.19460 -15.96270 -15.79296 -15.30424 -14.89601 -14.58136 -14.37960 -14.26294 -14.14195 -13.70195 -13.51454 -13.41658 -13.07515 -12.71976 -12.59058 -12.30007 -12.02450 -11.95946 -11.90509 -11.62916 -11.54057 -11.34313 -11.22589 -11.11036 -10.98938 -10.80279 -10.66116 -10.56812 -10.49828 -10.39315 -10.20279 -10.09935 -9.96461 -9.75103 -9.28031 -8.42055 -8.05292 -6.45668 -5.82460 -3.65479 1.90281 2.04569 2.84692 3.12408 3.25687 3.35371 3.36595 3.84772 4.11294 4.32060 4.36643 4.47840 4.62436 4.74121 4.78520 4.80321 4.86651 4.99771 5.10801 5.18839 5.22395 5.25519 5.41924 5.53801 5.63470 5.68089 5.73723 5.91009 5.96776 6.00889 6.06731 6.13582 6.28762 6.34729 6.40849 6.51669 6.54926 6.63924 6.76721 6.93049 7.08078 7.23475 7.31646 7.48249 7.57564 7.76521 7.83702 8.49095 8.53085 9.09895 9.61991 10.40219 11.07318 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023766 B = 0.002703 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.868056 B =10357.734778 C =11093.502126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.464 3.536 4 O -0.478 6.478 5 C 0.081 3.919 6 H 0.114 0.886 7 C -0.137 4.137 8 C -0.145 4.145 9 C 0.058 3.942 10 H 0.103 0.897 11 C 0.516 3.484 12 O -0.532 6.532 13 N -0.593 5.593 14 C 0.101 3.899 15 C 0.156 3.844 16 H 0.030 0.970 17 C -0.127 4.127 18 N -0.576 5.576 19 C -0.265 4.265 20 H 0.054 0.946 21 C 0.038 3.962 22 N -0.872 5.872 23 Si 0.884 3.116 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.275 1.275 27 C 0.181 3.819 28 H 0.033 0.967 29 C -0.145 4.145 30 C 0.082 3.918 31 O -0.316 6.316 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.037 0.963 44 H 0.255 0.745 45 H 0.053 0.947 46 H 0.023 0.977 47 H 0.092 0.908 48 H 0.068 0.932 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.937 -12.620 2.230 18.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.275 6.275 3 C 0.305 3.695 4 O -0.363 6.363 5 C 0.022 3.978 6 H 0.131 0.869 7 C -0.175 4.175 8 C -0.183 4.183 9 C -0.003 4.003 10 H 0.121 0.879 11 C 0.301 3.699 12 O -0.408 6.408 13 N -0.326 5.326 14 C -0.022 4.022 15 C 0.049 3.951 16 H 0.048 0.952 17 C -0.185 4.185 18 N -0.300 5.300 19 C -0.395 4.395 20 H 0.072 0.928 21 C -0.165 4.165 22 N -0.512 5.512 23 Si 0.712 3.288 24 H -0.208 1.208 25 H -0.216 1.216 26 H -0.199 1.199 27 C 0.074 3.926 28 H 0.051 0.949 29 C -0.202 4.202 30 C -0.042 4.042 31 O -0.234 6.234 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.042 0.958 47 H 0.110 0.890 48 H 0.087 0.913 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.593 -11.601 1.997 18.749 hybrid contribution 0.852 -0.401 0.251 0.974 sum -13.741 -12.002 2.248 18.383 Atomic orbital electron populations 1.23303 0.75819 1.03807 1.02825 1.86460 1.23700 1.32792 1.84508 1.23202 0.91142 0.81758 0.73429 1.90736 1.66481 1.36213 1.42847 1.22415 0.88045 0.86332 1.01029 0.86907 1.22891 0.98058 1.00681 0.95894 1.23062 0.99390 0.96484 0.99319 1.22952 0.85436 0.95001 0.96868 0.87937 1.19918 0.82169 0.89059 0.78716 1.90705 1.50556 1.43711 1.55877 1.47930 1.11501 1.12430 1.60717 1.22344 0.98630 0.83140 0.98091 1.20885 0.88491 0.89677 0.96015 0.95237 1.21635 1.00435 0.95504 1.00876 1.43942 1.10483 1.02549 1.73015 1.18660 0.81535 1.42623 0.96661 0.92833 1.25576 0.97883 0.98533 0.94495 1.70158 1.30234 1.46761 1.04000 0.86625 0.84167 0.78577 0.79436 1.20792 1.21635 1.19946 1.20692 0.90196 0.86877 0.94808 0.94923 1.22011 1.00791 0.94397 1.03050 1.22915 0.91504 0.87904 1.01912 1.89391 1.27058 1.21377 1.85579 0.91749 0.91731 0.87808 0.89913 0.88313 0.89542 0.88282 0.90088 0.91877 0.92841 0.91422 0.94381 0.93465 0.92809 0.95793 0.88985 0.91345 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.45 10.57 -39.25 -0.41 -3.87 16 3 C 0.46 5.80 7.20 36.01 0.26 6.06 16 4 O -0.48 -7.93 16.30 -25.28 -0.41 -8.35 16 5 C 0.08 0.90 3.82 -27.11 -0.10 0.80 16 6 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 7 C -0.14 -1.18 6.62 -25.17 -0.17 -1.34 16 8 C -0.14 -1.47 5.53 -25.17 -0.14 -1.61 16 9 C 0.06 0.81 2.76 -27.11 -0.07 0.74 16 10 H 0.10 1.24 7.62 -51.93 -0.40 0.85 16 11 C 0.52 9.35 7.02 -10.99 -0.08 9.27 16 12 O -0.53 -11.81 15.96 -13.67 -0.22 -12.03 16 13 N -0.59 -10.48 2.94 -172.23 -0.51 -10.98 16 14 C 0.10 1.89 5.90 -3.59 -0.02 1.87 16 15 C 0.16 3.26 3.65 -67.48 -0.25 3.01 16 16 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 17 C -0.13 -2.42 8.19 37.16 0.30 -2.12 16 18 N -0.58 -13.03 2.74 -156.79 -0.43 -13.45 16 19 C -0.27 -6.48 6.61 -15.06 -0.10 -6.58 16 20 H 0.05 1.34 7.18 -52.49 -0.38 0.97 16 21 C 0.04 0.94 3.31 -17.43 -0.06 0.89 16 22 N -0.87 -23.16 11.71 55.49 0.65 -22.51 16 23 Si 0.88 19.70 29.60 -169.99 -5.03 14.66 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 C 0.18 3.69 3.26 -67.27 -0.22 3.47 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 C -0.14 -2.87 7.85 37.15 0.29 -2.58 16 30 C 0.08 1.32 5.26 -3.38 -0.02 1.30 16 31 O -0.32 -5.04 10.17 -64.24 -0.65 -5.70 16 32 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.72 7.87 -51.93 -0.41 0.31 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.97 7.87 -51.93 -0.41 0.56 16 38 H 0.10 0.78 6.79 -51.93 -0.35 0.43 16 39 H 0.08 1.54 6.99 -51.93 -0.36 1.18 16 40 H 0.06 1.13 8.12 -51.93 -0.42 0.71 16 41 H 0.05 1.00 7.45 -51.93 -0.39 0.62 16 42 H 0.07 1.43 7.75 -51.93 -0.40 1.03 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.26 6.58 8.31 -40.82 -0.34 6.25 16 45 H 0.05 1.09 7.56 -51.93 -0.39 0.70 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.09 2.12 4.94 -51.93 -0.26 1.87 16 48 H 0.07 1.08 8.12 -51.93 -0.42 0.65 16 49 H 0.07 0.90 4.37 -51.93 -0.23 0.67 16 LS Contribution 383.02 15.07 5.77 5.77 Total: -1.00 -33.18 383.02 -8.30 -41.48 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.75 Total: 0.48 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 0.70 Total: 14.48 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.29 Total: -46.94 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -1.70 Total: -29.94 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.18 -8.30 -41.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880452480.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.676 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds