Wall clock time and date at job start Tue Mar 31 2020 23:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 117.00209 * 2 1 4 4 O 1.20819 * 119.99821 * 0.27628 * 3 2 1 5 5 C 1.50700 * 119.99589 * 179.97438 * 3 2 1 6 6 H 1.08998 * 110.33453 * 57.25700 * 5 3 2 7 7 C 1.54472 * 110.37793 * 294.99951 * 5 3 2 8 8 C 1.54503 * 104.06513 * 217.19354 * 7 5 3 9 9 C 1.54479 * 104.06412 * 359.97438 * 8 7 5 10 10 H 1.08992 * 110.37050 * 265.14647 * 9 8 7 11 11 C 1.50698 * 110.37120 * 142.81067 * 9 8 7 12 12 O 1.21284 * 119.99665 * 245.00225 * 11 9 8 13 13 N 1.34777 * 120.00050 * 64.99900 * 11 9 8 14 14 C 1.46965 * 120.59270 * 179.97438 * 13 11 9 15 15 C 1.53376 * 108.63579 * 235.20723 * 14 13 11 16 16 H 1.08995 * 109.60789 * 70.32281 * 15 14 13 17 17 C 1.53000 * 109.60672 * 190.83203 * 15 14 13 18 18 N 1.46963 * 108.63302 * 310.57345 * 15 14 13 19 19 C 1.36927 * 120.59827 * 235.24800 * 18 15 14 20 20 H 1.08002 * 120.00137 * 54.29813 * 19 18 15 21 21 C 1.38810 * 120.00316 * 234.30661 * 19 18 15 22 22 N 1.31619 * 119.99901 * 20.00446 * 21 19 18 23 23 Si 1.86800 * 120.00212 * 200.01322 * 21 19 18 24 24 H 1.48507 * 109.47362 * 89.99562 * 23 21 19 25 25 H 1.48497 * 109.47314 * 209.99545 * 23 21 19 26 26 H 1.48503 * 109.47062 * 329.99526 * 23 21 19 27 27 C 1.46967 * 118.80962 * 55.23205 * 18 15 14 28 28 H 1.08995 * 109.61350 * 64.68274 * 27 18 15 29 29 C 1.52992 * 109.61127 * 185.02631 * 27 18 15 30 30 C 1.46965 * 120.59453 * 359.72168 * 13 11 9 31 31 O 1.44420 * 104.80186 * 23.98111 * 9 8 7 32 32 H 1.09005 * 109.46562 * 300.00144 * 1 2 3 33 33 H 1.08995 * 109.47142 * 59.99782 * 1 2 3 34 34 H 1.08997 * 109.47470 * 179.97438 * 1 2 3 35 35 H 1.09004 * 110.51312 * 335.83938 * 7 5 3 36 36 H 1.09002 * 110.50904 * 98.54466 * 7 5 3 37 37 H 1.09005 * 110.51199 * 118.64557 * 8 7 5 38 38 H 1.09005 * 110.51249 * 241.35116 * 8 7 5 39 39 H 1.09003 * 109.61277 * 354.95096 * 14 13 11 40 40 H 1.08995 * 109.61036 * 115.46065 * 14 13 11 41 41 H 1.09000 * 109.47343 * 60.00144 * 17 15 14 42 42 H 1.09000 * 109.46719 * 179.97438 * 17 15 14 43 43 H 1.09000 * 109.47172 * 299.99585 * 17 15 14 44 44 H 0.97005 * 119.99732 * 182.19989 * 22 21 19 45 45 H 1.09000 * 109.47365 * 51.96586 * 29 27 18 46 46 H 1.09000 * 109.47638 * 171.96638 * 29 27 18 47 47 H 1.09000 * 109.47277 * 291.96325 * 29 27 18 48 48 H 1.08997 * 109.60882 * 244.53719 * 30 13 11 49 49 H 1.09002 * 109.60801 * 5.05363 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 0.0050 5 6 3.5664 1.2747 0.0006 6 1 3.9739 0.7422 -0.8588 7 6 4.1350 0.6919 1.3133 8 6 5.3388 1.6041 1.6387 9 6 5.3555 2.6298 0.4837 10 1 6.0389 2.3062 -0.3012 11 6 5.7504 3.9908 0.9964 12 8 4.9561 4.9066 0.9593 13 7 6.9861 4.1902 1.4962 14 6 7.3851 5.5122 1.9992 15 6 8.6606 5.9500 1.2685 16 1 8.4258 6.1819 0.2297 17 6 9.2466 7.1858 1.9543 18 7 9.6330 4.8493 1.3207 19 6 10.8881 5.0516 1.8293 20 1 11.0094 5.4660 2.8192 21 6 12.0048 4.7244 1.0724 22 7 11.9011 4.6003 -0.2338 23 14 13.6546 4.4599 1.9076 24 1 13.7966 3.0298 2.2816 25 1 14.7473 4.8388 0.9763 26 1 13.7314 5.3009 3.1292 27 6 9.2340 3.5273 0.8177 28 1 9.0429 3.5860 -0.2538 29 6 10.3514 2.5173 1.0854 30 6 7.9568 3.0882 1.5530 31 8 3.9982 2.6526 -0.0092 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3634 -1.0276 -0.0005 35 1 3.3908 0.7436 2.1081 36 1 4.4644 -0.3363 1.1636 37 1 5.1897 2.1069 2.5943 38 1 6.2634 1.0269 1.6499 39 1 6.5890 6.2318 1.8084 40 1 7.5790 5.4529 3.0701 41 1 9.4867 6.9469 2.9904 42 1 10.1530 7.4947 1.4337 43 1 8.5179 7.9960 1.9277 44 1 12.6740 4.3404 -0.7592 45 1 10.6346 2.5590 2.1372 46 1 10.0003 1.5142 0.8433 47 1 11.2156 2.7588 0.4666 48 1 8.1905 2.8599 2.5928 49 1 7.5382 2.2066 1.0674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880452480.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:24 Heat of formation + Delta-G solvation = -141.152343 kcal Electronic energy + Delta-G solvation = -31531.778511 eV Core-core repulsion = 27266.862333 eV Total energy + Delta-G solvation = -4264.916178 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.06716 -41.32588 -39.88040 -38.71803 -37.54832 -35.90423 -34.76805 -33.33592 -33.02641 -31.75413 -29.55664 -28.80543 -27.62160 -27.28947 -26.03636 -24.83261 -23.04789 -22.09712 -21.96466 -21.46276 -20.42858 -19.10165 -18.42643 -17.98596 -17.91668 -17.68673 -17.19041 -17.02195 -16.72086 -16.26535 -16.23202 -15.68398 -15.42672 -15.33248 -14.95307 -14.77052 -14.60913 -14.30770 -14.05405 -13.75644 -13.40866 -13.34982 -13.22583 -12.97708 -12.94699 -12.88733 -12.73097 -12.57308 -12.43360 -12.28737 -12.19836 -12.12002 -11.95426 -11.88423 -11.70599 -11.64159 -11.56591 -11.39560 -11.17208 -10.66447 -10.18760 -9.67989 -8.33512 -7.67745 -5.58193 0.98788 1.21247 1.47738 1.49982 1.53604 1.58819 1.89923 2.52202 2.88118 3.20706 3.27904 3.44129 3.52668 3.67963 3.76455 3.91996 3.96751 4.12390 4.20236 4.28455 4.29379 4.31031 4.33457 4.47821 4.53554 4.56928 4.60007 4.69206 4.74802 4.82510 4.83720 4.91919 4.93638 4.97845 4.99254 5.05556 5.19840 5.24940 5.34884 5.39072 5.50190 5.62876 5.70939 5.78557 5.99304 6.43310 6.60638 6.61079 7.09350 7.27410 7.79770 8.54849 9.16200 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023766 B = 0.002703 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.868056 B =10357.734778 C =11093.502126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.347 6.347 3 C 0.466 3.534 4 O -0.533 6.533 5 C 0.072 3.928 6 H 0.149 0.851 7 C -0.126 4.126 8 C -0.139 4.139 9 C 0.058 3.942 10 H 0.126 0.874 11 C 0.508 3.492 12 O -0.583 6.583 13 N -0.594 5.594 14 C 0.111 3.889 15 C 0.152 3.848 16 H -0.005 1.005 17 C -0.116 4.116 18 N -0.590 5.590 19 C -0.262 4.262 20 H 0.049 0.951 21 C 0.002 3.998 22 N -0.906 5.906 23 Si 0.937 3.063 24 H -0.273 1.273 25 H -0.301 1.301 26 H -0.272 1.272 27 C 0.176 3.824 28 H 0.002 0.998 29 C -0.137 4.137 30 C 0.095 3.905 31 O -0.362 6.362 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.142 0.858 35 H 0.077 0.923 36 H 0.142 0.858 37 H 0.074 0.926 38 H 0.134 0.866 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.041 0.959 43 H 0.062 0.938 44 H 0.251 0.749 45 H 0.048 0.952 46 H 0.064 0.936 47 H 0.058 0.942 48 H 0.083 0.917 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.153 -16.067 3.504 21.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.263 6.263 3 C 0.309 3.691 4 O -0.421 6.421 5 C 0.014 3.986 6 H 0.166 0.834 7 C -0.163 4.163 8 C -0.176 4.176 9 C -0.002 4.002 10 H 0.144 0.856 11 C 0.297 3.703 12 O -0.463 6.463 13 N -0.326 5.326 14 C -0.013 4.013 15 C 0.046 3.954 16 H 0.013 0.987 17 C -0.174 4.174 18 N -0.314 5.314 19 C -0.392 4.392 20 H 0.066 0.934 21 C -0.198 4.198 22 N -0.547 5.547 23 Si 0.765 3.235 24 H -0.198 1.198 25 H -0.228 1.228 26 H -0.196 1.196 27 C 0.069 3.931 28 H 0.019 0.981 29 C -0.195 4.195 30 C -0.028 4.028 31 O -0.281 6.281 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.160 0.840 35 H 0.096 0.904 36 H 0.160 0.840 37 H 0.093 0.907 38 H 0.152 0.848 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.102 0.898 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.803 -15.106 3.294 21.405 hybrid contribution 0.833 0.695 -0.203 1.103 sum -13.970 -14.411 3.091 20.308 Atomic orbital electron populations 1.23623 0.74364 1.06159 1.02416 1.86462 1.25095 1.31108 1.83669 1.23670 0.91917 0.81664 0.71836 1.90718 1.67711 1.38047 1.45643 1.22855 0.87093 0.84671 1.03972 0.83369 1.22944 0.96991 1.02290 0.94082 1.23131 1.01795 0.95744 0.96973 1.23073 0.85348 0.92888 0.98891 0.85639 1.20797 0.81490 0.90496 0.77552 1.90674 1.51996 1.45857 1.57820 1.48020 1.11916 1.12355 1.60309 1.22085 0.96846 0.84029 0.98329 1.20916 0.89549 0.90279 0.94675 0.98692 1.21524 0.99836 0.95664 1.00412 1.44225 1.10357 1.03953 1.72914 1.18755 0.82422 1.41774 0.96224 0.93367 1.26070 1.00278 0.98734 0.94672 1.70266 1.30697 1.48525 1.05223 0.85787 0.80707 0.78781 0.78262 1.19834 1.22805 1.19642 1.20744 0.92582 0.86190 0.93558 0.98054 1.21872 0.99444 0.96304 1.01878 1.22855 0.89020 0.88410 1.02558 1.89354 1.28009 1.24712 1.86021 0.92243 0.92222 0.83991 0.90387 0.83977 0.90736 0.84764 0.90987 0.90613 0.92274 0.94012 0.91912 0.93969 0.93270 0.91763 0.92284 0.89828 0.86963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.53 16 2 O -0.35 -5.92 10.57 -51.40 -0.54 -6.46 16 3 C 0.47 11.09 7.20 71.24 0.51 11.60 16 4 O -0.53 -18.01 16.30 28.23 0.46 -17.55 16 5 C 0.07 1.41 3.82 30.35 0.12 1.53 16 6 H 0.15 1.80 8.14 -2.39 -0.02 1.78 16 7 C -0.13 -1.61 6.62 31.61 0.21 -1.40 16 8 C -0.14 -2.25 5.53 31.61 0.17 -2.07 16 9 C 0.06 1.49 2.76 30.35 0.08 1.58 16 10 H 0.13 2.60 7.62 -2.39 -0.02 2.58 16 11 C 0.51 18.15 7.02 87.66 0.62 18.76 16 12 O -0.58 -26.60 15.96 15.34 0.24 -26.36 16 13 N -0.59 -20.33 2.94 -817.21 -2.40 -22.74 16 14 C 0.11 4.13 5.90 86.42 0.51 4.64 16 15 C 0.15 6.49 3.65 45.03 0.16 6.65 16 16 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 17 C -0.12 -4.51 8.19 71.98 0.59 -3.92 16 18 N -0.59 -26.75 2.74 -649.97 -1.78 -28.53 16 19 C -0.26 -12.80 6.61 84.03 0.56 -12.24 16 20 H 0.05 2.40 7.18 -2.91 -0.02 2.38 16 21 C 0.00 0.11 3.31 84.86 0.28 0.39 16 22 N -0.91 -49.06 11.71 21.65 0.25 -48.81 16 23 Si 0.94 40.46 29.60 68.60 2.03 42.49 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.30 -13.46 7.11 99.48 0.71 -12.76 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 C 0.18 6.96 3.26 45.16 0.15 7.10 16 28 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 29 C -0.14 -5.17 7.85 71.98 0.56 -4.61 16 30 C 0.09 2.77 5.26 86.55 0.46 3.22 16 31 O -0.36 -11.21 10.17 -121.25 -1.23 -12.44 16 32 H 0.06 0.81 8.13 -2.38 -0.02 0.79 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.14 0.63 8.14 -2.39 -0.02 0.62 16 35 H 0.08 1.10 7.87 -2.39 -0.02 1.08 16 36 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.07 1.43 7.87 -2.38 -0.02 1.41 16 38 H 0.13 1.23 6.79 -2.38 -0.02 1.21 16 39 H 0.07 2.81 6.99 -2.39 -0.02 2.79 16 40 H 0.08 2.63 8.12 -2.39 -0.02 2.61 16 41 H 0.06 2.20 7.45 -2.39 -0.02 2.18 16 42 H 0.04 1.80 7.75 -2.39 -0.02 1.78 16 43 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.25 13.26 8.31 -92.70 -0.77 12.49 16 45 H 0.05 1.87 7.56 -2.39 -0.02 1.85 16 46 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.06 2.68 4.94 -2.39 -0.01 2.67 16 48 H 0.08 2.28 8.12 -2.39 -0.02 2.26 16 49 H 0.11 2.32 4.37 -2.39 -0.01 2.31 16 Total: -1.00 -77.98 383.02 4.15 -73.82 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.95 Total: 13.80 kcal Atomic # 6 Polarization: 26.60 SS G_CDS: 6.18 Total: 32.78 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -3.93 Total: -100.07 kcal Atomic # 8 Polarization: -61.74 SS G_CDS: -1.07 Total: -62.81 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -77.98 4.15 -73.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880452480.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.328 kcal (2) G-P(sol) polarization free energy of solvation -77.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds