Wall clock time and date at job start Tue Mar 31 2020 23:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46502 * 2 1 4 4 O 1.45198 * 109.47162 * 240.00334 * 2 1 3 5 5 C 1.34224 * 116.99916 * 89.99967 * 4 2 1 6 6 O 1.20823 * 120.00644 * 359.97438 * 5 4 2 7 7 C 1.50712 * 119.99687 * 179.97438 * 5 4 2 8 8 C 1.53004 * 109.46832 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46868 * 179.97438 * 8 7 5 10 10 N 1.46498 * 109.46936 * 180.02562 * 9 8 7 11 11 C 1.34775 * 119.99678 * 180.02562 * 10 9 8 12 12 O 1.21281 * 120.00392 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.99889 * 180.02562 * 11 10 9 14 14 C 1.52999 * 117.49913 * 248.62049 * 13 11 10 15 15 C 1.52993 * 60.00003 * 252.50990 * 14 13 11 16 16 C 1.50699 * 109.47444 * 120.00000 * 2 1 3 17 17 O 1.21277 * 120.00380 * 106.65942 * 16 2 1 18 18 N 1.34781 * 119.99940 * 286.66186 * 16 2 1 19 19 C 1.46498 * 120.00118 * 5.11958 * 18 16 2 20 20 C 1.46497 * 120.00250 * 185.12097 * 18 16 2 21 21 C 1.50703 * 109.46912 * 269.99938 * 20 18 16 22 22 H 1.07991 * 120.00312 * 359.97438 * 21 20 18 23 23 C 1.37874 * 119.99659 * 179.97438 * 21 20 18 24 24 N 1.31514 * 120.00601 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99696 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46874 * 90.00245 * 25 23 21 27 27 H 1.48504 * 109.46974 * 210.00085 * 25 23 21 28 28 H 1.48498 * 109.47088 * 329.99887 * 25 23 21 29 29 H 1.08998 * 109.47796 * 50.07066 * 1 2 3 30 30 H 1.09010 * 109.46524 * 170.07169 * 1 2 3 31 31 H 1.09006 * 109.47131 * 290.06199 * 1 2 3 32 32 H 1.08996 * 109.46974 * 299.99313 * 7 5 4 33 33 H 1.08998 * 109.46919 * 59.99745 * 7 5 4 34 34 H 1.08996 * 109.47142 * 299.99653 * 8 7 5 35 35 H 1.08999 * 109.46719 * 60.00200 * 8 7 5 36 36 H 1.09005 * 109.47379 * 300.00050 * 9 8 7 37 37 H 1.08999 * 109.47024 * 59.99897 * 9 8 7 38 38 H 0.96992 * 120.00039 * 0.02562 * 10 9 8 39 39 H 1.08999 * 115.55137 * 34.33362 * 13 11 10 40 40 H 1.08997 * 117.50113 * 0.02562 * 14 13 11 41 41 H 1.09006 * 117.49548 * 145.02045 * 14 13 11 42 42 H 1.08998 * 117.50115 * 252.50706 * 15 14 13 43 43 H 1.09005 * 117.51800 * 107.48281 * 15 14 13 44 44 H 1.09008 * 109.47325 * 265.08571 * 19 18 16 45 45 H 1.09003 * 109.46975 * 25.07821 * 19 18 16 46 46 H 1.08994 * 109.47607 * 145.08127 * 19 18 16 47 47 H 1.09008 * 109.46987 * 29.99742 * 20 18 16 48 48 H 1.09001 * 109.47336 * 149.99772 * 20 18 16 49 49 H 0.96998 * 120.00585 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2171 0.0641 -2.2810 6 8 1.9973 1.2518 -2.2506 7 6 2.7193 -0.5769 -3.5492 8 6 2.8632 0.4892 -4.6372 9 6 3.3737 -0.1615 -5.9244 10 7 3.5120 0.8594 -6.9659 11 6 3.9492 0.5148 -8.1933 12 8 4.2277 -0.6404 -8.4358 13 6 4.0921 1.5650 -9.2647 14 6 3.1260 1.5017 -10.4493 15 6 4.5932 1.1107 -10.6370 16 6 2.0324 -0.7104 1.2304 17 8 2.5184 -1.8174 1.1356 18 7 1.9415 -0.1154 2.4364 19 6 1.2543 1.1716 2.5683 20 6 2.5300 -0.7557 3.6153 21 6 1.5074 -1.6540 4.2621 22 1 0.5180 -1.7391 3.8378 23 6 1.8350 -2.3671 5.3957 24 7 3.0397 -2.2632 5.9128 25 14 0.5675 -3.4812 6.1971 26 1 0.6657 -4.8429 5.6130 27 1 0.8224 -3.5498 7.6585 28 1 -0.7928 -2.9363 5.9569 29 1 -0.3634 0.6596 -0.7880 30 1 -0.3633 -1.0124 -0.1772 31 1 -0.3634 0.3525 0.9654 32 1 3.6885 -1.0397 -3.3632 33 1 2.0105 -1.3372 -3.8773 34 1 1.8939 0.9517 -4.8231 35 1 3.5718 1.2497 -4.3091 36 1 4.3431 -0.6238 -5.7382 37 1 2.6654 -0.9223 -6.2525 38 1 3.2890 1.7832 -6.7722 39 1 4.3998 2.5515 -8.9179 40 1 2.3868 0.7007 -10.4537 41 1 2.7977 2.4468 -10.8821 42 1 5.2302 1.7984 -11.1932 43 1 4.8199 0.0522 -10.7649 44 1 1.9832 1.9802 2.5126 45 1 0.5288 1.2804 1.7621 46 1 0.7395 1.2120 3.5282 47 1 3.3946 -1.3473 3.3139 48 1 2.8431 0.0092 4.3260 49 1 3.2703 -2.7652 6.7101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915424531.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:21 Heat of formation + Delta-G solvation = -134.069360 kcal Electronic energy + Delta-G solvation = -28621.838667 eV Core-core repulsion = 24357.229630 eV Total energy + Delta-G solvation = -4264.609037 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.80564 -40.31957 -39.02872 -37.09797 -36.54266 -35.73572 -34.92948 -33.27319 -32.84297 -31.60797 -28.21699 -27.70129 -26.21235 -24.97622 -24.16703 -22.95745 -22.82507 -22.08409 -20.87380 -20.20705 -18.90294 -18.06529 -17.80101 -16.86074 -16.71821 -16.55543 -16.31763 -15.92386 -15.73858 -15.39626 -15.09628 -14.75862 -14.51650 -14.44305 -14.16630 -13.68776 -13.17235 -13.05878 -12.97775 -12.72149 -12.67593 -12.52086 -12.14350 -12.10152 -12.04892 -11.94548 -11.65007 -11.39800 -11.37230 -11.22835 -11.13568 -11.02001 -10.88978 -10.76693 -10.62779 -10.57152 -10.27126 -10.18088 -9.67224 -9.51675 -8.93266 -8.46362 -7.74927 -6.07310 -4.12279 2.07329 2.08440 2.33041 2.76037 3.21373 3.30057 3.36293 3.36683 3.38749 3.83677 4.16349 4.27993 4.37279 4.38578 4.42428 4.50726 4.51697 4.62984 4.74810 4.87712 4.99100 5.04513 5.09198 5.09500 5.16090 5.22932 5.27401 5.32264 5.40625 5.43649 5.60686 5.61203 5.63299 5.68938 5.71398 5.85295 5.97864 6.03760 6.22463 6.39052 6.95874 7.04514 7.35494 7.43654 7.64780 7.80231 7.88345 8.18095 8.26757 8.82382 8.96868 9.52767 11.00896 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030624 B = 0.001530 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.081303 B =18290.516298 C =18593.734187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.071 3.929 3 H 0.103 0.897 4 O -0.325 6.325 5 C 0.462 3.538 6 O -0.514 6.514 7 C -0.111 4.111 8 C -0.120 4.120 9 C 0.118 3.882 10 N -0.726 5.726 11 C 0.542 3.458 12 O -0.540 6.540 13 C -0.197 4.197 14 C -0.153 4.153 15 C -0.148 4.148 16 C 0.506 3.494 17 O -0.517 6.517 18 N -0.596 5.596 19 C 0.066 3.934 20 C 0.247 3.753 21 C -0.528 4.528 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.895 5.895 25 Si 0.899 3.101 26 H -0.279 1.279 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.403 0.597 39 H 0.124 0.876 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.048 0.952 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.044 0.956 48 H 0.036 0.964 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.811 12.629 -27.841 30.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.012 3.988 3 H 0.121 0.879 4 O -0.240 6.240 5 C 0.305 3.695 6 O -0.403 6.403 7 C -0.149 4.149 8 C -0.158 4.158 9 C -0.006 4.006 10 N -0.378 5.378 11 C 0.328 3.672 12 O -0.417 6.417 13 C -0.218 4.218 14 C -0.190 4.190 15 C -0.185 4.185 16 C 0.291 3.709 17 O -0.392 6.392 18 N -0.330 5.330 19 C -0.078 4.078 20 C 0.129 3.871 21 C -0.566 4.566 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.533 5.533 25 Si 0.727 3.273 26 H -0.205 1.205 27 H -0.211 1.211 28 H -0.199 1.199 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.238 0.762 39 H 0.142 0.858 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.127 0.873 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.096 0.904 47 H 0.062 0.938 48 H 0.054 0.946 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.298 11.467 -27.814 30.113 hybrid contribution -0.837 0.109 0.908 1.239 sum -2.134 11.575 -26.907 29.369 Atomic orbital electron populations 1.22324 0.92345 1.04103 1.04097 1.22653 0.95909 0.97372 0.82850 0.87889 1.86636 1.76270 1.41458 1.19614 1.23689 0.74189 0.85899 0.85729 1.90640 1.48523 1.16666 1.84445 1.21238 1.04834 0.99610 0.89233 1.21598 1.03525 0.98017 0.92676 1.21360 1.02096 0.90850 0.86269 1.45886 1.68071 1.12424 1.11398 1.19684 0.76220 0.88794 0.82489 1.90718 1.49656 1.20244 1.81046 1.22204 1.09374 1.00204 0.90049 1.22949 0.93667 1.03893 0.98493 1.22963 0.96715 1.03538 0.95292 1.19791 0.80795 0.86543 0.83818 1.90711 1.44366 1.18558 1.85585 1.48081 1.55352 1.21143 1.08434 1.21994 0.96886 0.85464 1.03407 1.19345 0.94516 0.93011 0.80270 1.21412 0.98748 1.26226 1.10252 0.92345 1.24935 0.95570 0.96672 0.96885 1.69927 1.19091 1.42026 1.22304 0.86481 0.81409 0.81153 0.78268 1.20501 1.21127 1.19926 0.91226 0.90604 0.89011 0.86925 0.87058 0.90094 0.90051 0.90873 0.90959 0.76213 0.85760 0.88204 0.87686 0.87828 0.87343 0.93350 0.91441 0.90365 0.93840 0.94606 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 9.09 37.16 0.34 -1.95 16 2 C 0.07 1.14 2.16 -27.88 -0.06 1.08 16 3 H 0.10 1.53 6.74 -51.93 -0.35 1.18 16 4 O -0.32 -5.15 9.45 -45.78 -0.43 -5.58 16 5 C 0.46 5.82 7.93 36.01 0.29 6.11 16 6 O -0.51 -7.19 15.20 -18.75 -0.28 -7.47 16 7 C -0.11 -0.90 5.81 -27.88 -0.16 -1.07 16 8 C -0.12 -0.80 4.62 -26.73 -0.12 -0.92 16 9 C 0.12 0.81 5.67 -4.04 -0.02 0.79 16 10 N -0.73 -4.73 5.56 -60.29 -0.33 -5.07 16 11 C 0.54 4.70 7.61 -10.99 -0.08 4.62 16 12 O -0.54 -6.91 16.26 5.56 0.09 -6.82 16 13 C -0.20 -1.13 6.19 -91.77 -0.57 -1.70 16 14 C -0.15 -0.73 10.23 -26.74 -0.27 -1.00 16 15 C -0.15 -0.83 10.04 -26.74 -0.27 -1.10 16 16 C 0.51 10.74 7.00 -10.98 -0.08 10.66 16 17 O -0.52 -13.36 16.19 -13.71 -0.22 -13.59 16 18 N -0.60 -12.57 2.86 -182.95 -0.52 -13.09 16 19 C 0.07 1.02 9.86 59.85 0.59 1.61 16 20 C 0.25 6.42 5.15 -5.19 -0.03 6.39 16 21 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 22 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 23 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 24 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 25 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 31 H 0.09 1.16 5.50 -51.93 -0.29 0.87 16 32 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 35 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.40 1.62 8.47 -40.82 -0.35 1.27 16 39 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.11 0.79 7.67 -51.93 -0.40 0.40 16 44 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 45 H 0.07 0.85 4.11 -51.93 -0.21 0.64 16 46 H 0.08 1.22 8.11 -51.93 -0.42 0.80 16 47 H 0.04 1.27 7.50 -51.92 -0.39 0.88 16 48 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 49 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 413.92 15.07 6.24 6.24 Total: -1.00 -37.41 413.92 -8.49 -45.89 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.86 Total: -1.55 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: -0.87 Total: 10.00 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: -0.12 Total: -43.84 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.85 Total: -33.46 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -37.41 -8.49 -45.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915424531.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.176 kcal (2) G-P(sol) polarization free energy of solvation -37.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds