Wall clock time and date at job start Tue Mar 31 2020 23:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46502 * 2 1 4 4 O 1.45198 * 109.47162 * 240.00334 * 2 1 3 5 5 C 1.34224 * 116.99916 * 89.99967 * 4 2 1 6 6 O 1.20823 * 120.00644 * 359.97438 * 5 4 2 7 7 C 1.50712 * 119.99687 * 179.97438 * 5 4 2 8 8 C 1.53004 * 109.46832 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46868 * 179.97438 * 8 7 5 10 10 N 1.46498 * 109.46936 * 180.02562 * 9 8 7 11 11 C 1.34775 * 119.99678 * 180.02562 * 10 9 8 12 12 O 1.21281 * 120.00392 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.99889 * 180.02562 * 11 10 9 14 14 C 1.52999 * 117.49913 * 248.62049 * 13 11 10 15 15 C 1.52993 * 60.00003 * 252.50990 * 14 13 11 16 16 C 1.50699 * 109.47444 * 120.00000 * 2 1 3 17 17 O 1.21277 * 120.00380 * 106.65942 * 16 2 1 18 18 N 1.34781 * 119.99940 * 286.66186 * 16 2 1 19 19 C 1.46498 * 120.00118 * 5.11958 * 18 16 2 20 20 C 1.46497 * 120.00250 * 185.12097 * 18 16 2 21 21 C 1.50703 * 109.46912 * 269.99938 * 20 18 16 22 22 H 1.07991 * 120.00312 * 359.97438 * 21 20 18 23 23 C 1.37874 * 119.99659 * 179.97438 * 21 20 18 24 24 N 1.31514 * 120.00601 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99696 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46874 * 90.00245 * 25 23 21 27 27 H 1.48504 * 109.46974 * 210.00085 * 25 23 21 28 28 H 1.48498 * 109.47088 * 329.99887 * 25 23 21 29 29 H 1.08998 * 109.47796 * 50.07066 * 1 2 3 30 30 H 1.09010 * 109.46524 * 170.07169 * 1 2 3 31 31 H 1.09006 * 109.47131 * 290.06199 * 1 2 3 32 32 H 1.08996 * 109.46974 * 299.99313 * 7 5 4 33 33 H 1.08998 * 109.46919 * 59.99745 * 7 5 4 34 34 H 1.08996 * 109.47142 * 299.99653 * 8 7 5 35 35 H 1.08999 * 109.46719 * 60.00200 * 8 7 5 36 36 H 1.09005 * 109.47379 * 300.00050 * 9 8 7 37 37 H 1.08999 * 109.47024 * 59.99897 * 9 8 7 38 38 H 0.96992 * 120.00039 * 0.02562 * 10 9 8 39 39 H 1.08999 * 115.55137 * 34.33362 * 13 11 10 40 40 H 1.08997 * 117.50113 * 0.02562 * 14 13 11 41 41 H 1.09006 * 117.49548 * 145.02045 * 14 13 11 42 42 H 1.08998 * 117.50115 * 252.50706 * 15 14 13 43 43 H 1.09005 * 117.51800 * 107.48281 * 15 14 13 44 44 H 1.09008 * 109.47325 * 265.08571 * 19 18 16 45 45 H 1.09003 * 109.46975 * 25.07821 * 19 18 16 46 46 H 1.08994 * 109.47607 * 145.08127 * 19 18 16 47 47 H 1.09008 * 109.46987 * 29.99742 * 20 18 16 48 48 H 1.09001 * 109.47336 * 149.99772 * 20 18 16 49 49 H 0.96998 * 120.00585 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2171 0.0641 -2.2810 6 8 1.9973 1.2518 -2.2506 7 6 2.7193 -0.5769 -3.5492 8 6 2.8632 0.4892 -4.6372 9 6 3.3737 -0.1615 -5.9244 10 7 3.5120 0.8594 -6.9659 11 6 3.9492 0.5148 -8.1933 12 8 4.2277 -0.6404 -8.4358 13 6 4.0921 1.5650 -9.2647 14 6 3.1260 1.5017 -10.4493 15 6 4.5932 1.1107 -10.6370 16 6 2.0324 -0.7104 1.2304 17 8 2.5184 -1.8174 1.1356 18 7 1.9415 -0.1154 2.4364 19 6 1.2543 1.1716 2.5683 20 6 2.5300 -0.7557 3.6153 21 6 1.5074 -1.6540 4.2621 22 1 0.5180 -1.7391 3.8378 23 6 1.8350 -2.3671 5.3957 24 7 3.0397 -2.2632 5.9128 25 14 0.5675 -3.4812 6.1971 26 1 0.6657 -4.8429 5.6130 27 1 0.8224 -3.5498 7.6585 28 1 -0.7928 -2.9363 5.9569 29 1 -0.3634 0.6596 -0.7880 30 1 -0.3633 -1.0124 -0.1772 31 1 -0.3634 0.3525 0.9654 32 1 3.6885 -1.0397 -3.3632 33 1 2.0105 -1.3372 -3.8773 34 1 1.8939 0.9517 -4.8231 35 1 3.5718 1.2497 -4.3091 36 1 4.3431 -0.6238 -5.7382 37 1 2.6654 -0.9223 -6.2525 38 1 3.2890 1.7832 -6.7722 39 1 4.3998 2.5515 -8.9179 40 1 2.3868 0.7007 -10.4537 41 1 2.7977 2.4468 -10.8821 42 1 5.2302 1.7984 -11.1932 43 1 4.8199 0.0522 -10.7649 44 1 1.9832 1.9802 2.5126 45 1 0.5288 1.2804 1.7621 46 1 0.7395 1.2120 3.5282 47 1 3.3946 -1.3473 3.3139 48 1 2.8431 0.0092 4.3260 49 1 3.2703 -2.7652 6.7101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915424531.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:20 Heat of formation + Delta-G solvation = -158.915852 kcal Electronic energy + Delta-G solvation = -28622.916092 eV Core-core repulsion = 24357.229630 eV Total energy + Delta-G solvation = -4265.686462 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.94493 -40.97650 -40.55374 -37.93511 -37.33455 -36.70690 -36.44255 -34.90091 -33.94989 -32.96279 -29.67307 -28.84600 -27.67517 -26.05553 -25.37455 -24.23321 -23.30628 -22.93826 -21.78368 -20.88094 -20.45310 -19.06516 -18.70403 -18.40861 -18.11006 -17.61088 -17.44428 -17.06129 -16.68947 -16.56579 -16.21886 -15.99233 -15.83614 -15.32533 -15.06190 -14.75842 -14.64709 -14.32750 -14.00955 -13.72730 -13.63108 -13.53406 -13.40402 -13.39011 -13.29584 -13.02380 -12.84969 -12.64377 -12.54787 -12.43757 -12.35580 -12.18782 -12.00029 -11.88434 -11.71438 -11.63099 -11.54305 -11.44181 -10.96119 -10.65887 -10.61568 -10.13743 -9.53129 -8.23706 -6.38274 1.08504 1.29022 1.37156 1.40470 1.45918 1.49567 1.60869 2.12258 2.34511 2.45746 2.93058 3.06567 3.38368 3.48643 3.70183 3.76873 3.83770 3.86670 3.93258 3.95178 3.99210 4.12846 4.22039 4.25984 4.45541 4.52364 4.58833 4.62447 4.65109 4.69331 4.75257 4.86403 4.92782 4.93809 5.03759 5.04811 5.11638 5.14747 5.17273 5.22858 5.34705 5.42916 5.51340 5.77036 6.02705 6.51151 6.53420 6.66432 6.70541 7.19942 7.21481 7.35549 8.83771 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030624 B = 0.001530 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.081303 B =18290.516298 C =18593.734187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.081 3.919 3 H 0.121 0.879 4 O -0.347 6.347 5 C 0.461 3.539 6 O -0.526 6.526 7 C -0.108 4.108 8 C -0.105 4.105 9 C 0.121 3.879 10 N -0.715 5.715 11 C 0.534 3.466 12 O -0.590 6.590 13 C -0.199 4.199 14 C -0.142 4.142 15 C -0.157 4.157 16 C 0.497 3.503 17 O -0.577 6.577 18 N -0.601 5.601 19 C 0.060 3.940 20 C 0.260 3.740 21 C -0.544 4.544 22 H 0.056 0.944 23 C 0.008 3.992 24 N -0.928 5.928 25 Si 0.968 3.032 26 H -0.282 1.282 27 H -0.275 1.275 28 H -0.260 1.260 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.418 0.582 39 H 0.153 0.847 40 H 0.087 0.913 41 H 0.131 0.869 42 H 0.125 0.875 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.076 0.924 47 H -0.002 1.002 48 H 0.031 0.969 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.719 14.695 -29.005 32.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 H 0.138 0.862 4 O -0.263 6.263 5 C 0.305 3.695 6 O -0.415 6.415 7 C -0.146 4.146 8 C -0.143 4.143 9 C -0.003 4.003 10 N -0.366 5.366 11 C 0.322 3.678 12 O -0.471 6.471 13 C -0.220 4.220 14 C -0.179 4.179 15 C -0.195 4.195 16 C 0.284 3.716 17 O -0.457 6.457 18 N -0.333 5.333 19 C -0.082 4.082 20 C 0.139 3.861 21 C -0.582 4.582 22 H 0.074 0.926 23 C -0.191 4.191 24 N -0.568 5.568 25 Si 0.792 3.208 26 H -0.208 1.208 27 H -0.200 1.200 28 H -0.184 1.184 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.255 0.745 39 H 0.170 0.830 40 H 0.105 0.895 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.119 0.881 46 H 0.095 0.905 47 H 0.016 0.984 48 H 0.049 0.951 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.243 13.626 -28.977 32.185 hybrid contribution -0.191 -0.496 1.237 1.347 sum -3.434 13.131 -27.740 30.882 Atomic orbital electron populations 1.22325 0.89873 1.04413 1.05571 1.22498 0.97490 0.96819 0.80916 0.86182 1.86655 1.76848 1.42603 1.20211 1.24450 0.73484 0.85805 0.85714 1.90624 1.49186 1.17185 1.84554 1.21399 1.05531 1.00288 0.87389 1.21463 1.03772 0.97355 0.91725 1.21276 1.01589 0.90983 0.86482 1.45823 1.66951 1.13140 1.10725 1.20270 0.75389 0.88745 0.83419 1.90694 1.52011 1.22434 1.81968 1.22301 1.10144 1.00330 0.89252 1.23031 0.92801 1.04610 0.97470 1.23006 0.98010 1.02676 0.95780 1.20751 0.79575 0.86060 0.85212 1.90669 1.46984 1.21383 1.86640 1.48073 1.55239 1.22718 1.07300 1.22318 0.97906 0.83206 1.04734 1.18839 0.93045 0.92433 0.81786 1.21694 0.98955 1.26948 1.10651 0.92566 1.25854 0.97639 0.98080 0.97499 1.70043 1.20965 1.42953 1.22815 0.85409 0.79278 0.78553 0.77531 1.20784 1.19967 1.18422 0.88451 0.91445 0.88183 0.86087 0.85167 0.89481 0.90102 0.91717 0.91305 0.74523 0.82967 0.89474 0.85054 0.85682 0.89856 0.90926 0.88061 0.90547 0.98405 0.95093 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 9.09 71.98 0.65 -3.33 16 2 C 0.08 2.51 2.16 29.85 0.06 2.57 16 3 H 0.12 3.29 6.74 -2.38 -0.02 3.27 16 4 O -0.35 -10.71 9.45 -45.10 -0.43 -11.14 16 5 C 0.46 10.83 7.93 71.24 0.56 11.40 16 6 O -0.53 -13.45 15.20 21.97 0.33 -13.12 16 7 C -0.11 -1.58 5.81 29.85 0.17 -1.41 16 8 C -0.11 -1.19 4.62 30.60 0.14 -1.05 16 9 C 0.12 1.53 5.67 86.38 0.49 2.02 16 10 N -0.71 -8.33 5.56 -463.06 -2.57 -10.90 16 11 C 0.53 8.97 7.61 87.66 0.67 9.64 16 12 O -0.59 -15.57 16.26 -3.03 -0.05 -15.61 16 13 C -0.20 -1.96 6.19 -11.54 -0.07 -2.03 16 14 C -0.14 -1.12 10.23 30.59 0.31 -0.80 16 15 C -0.16 -1.62 10.04 30.59 0.31 -1.32 16 16 C 0.50 21.34 7.00 87.66 0.61 21.95 16 17 O -0.58 -31.13 16.19 15.41 0.25 -30.88 16 18 N -0.60 -25.50 2.86 -851.12 -2.43 -27.93 16 19 C 0.06 1.74 9.86 127.77 1.26 3.00 16 20 C 0.26 13.99 5.15 85.63 0.44 14.43 16 21 C -0.54 -31.21 9.39 25.60 0.24 -30.97 16 22 H 0.06 3.17 7.81 -2.92 -0.02 3.15 16 23 C 0.01 0.48 5.46 84.65 0.46 0.94 16 24 N -0.93 -55.95 13.29 21.45 0.28 -55.67 16 25 Si 0.97 44.68 29.54 68.60 2.03 46.71 16 26 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 28 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 29 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.10 2.22 5.50 -2.38 -0.01 2.21 16 32 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 0.92 8.10 -2.39 -0.02 0.90 16 35 H 0.08 0.96 8.10 -2.39 -0.02 0.94 16 36 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.42 2.41 8.47 -92.71 -0.79 1.62 16 39 H 0.15 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.13 0.35 8.14 -2.38 -0.02 0.33 16 42 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.08 1.29 7.67 -2.38 -0.02 1.28 16 44 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 45 H 0.10 2.25 4.11 -2.39 -0.01 2.24 16 46 H 0.08 2.27 8.11 -2.39 -0.02 2.25 16 47 H 0.00 -0.14 7.50 -2.38 -0.02 -0.15 16 48 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 49 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -85.36 413.92 3.91 -81.45 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.18 Total: 12.05 kcal Atomic # 6 Polarization: 18.73 SS G_CDS: 6.32 Total: 25.05 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -4.72 Total: -94.50 kcal Atomic # 8 Polarization: -70.86 SS G_CDS: 0.11 Total: -70.75 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -85.36 3.91 -81.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915424531.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.468 kcal (2) G-P(sol) polarization free energy of solvation -85.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds